Wall clock time and date at job start Tue Mar 31 2020 11:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 115.54886 * 2 1 4 4 O 1.21282 * 120.00287 * 98.86407 * 3 2 1 5 5 N 1.34777 * 120.00126 * 278.86003 * 3 2 1 6 6 C 1.47431 * 125.64813 * 355.08629 * 5 3 2 7 7 C 1.55390 * 104.87237 * 204.09726 * 6 5 3 8 8 C 1.55154 * 101.36861 * 323.01532 * 7 6 5 9 9 O 1.42901 * 110.71872 * 277.04491 * 8 7 6 10 10 C 1.50693 * 110.72215 * 153.94918 * 8 7 6 11 11 H 1.08007 * 119.99979 * 243.84356 * 10 8 7 12 12 C 1.37880 * 120.00175 * 63.84213 * 10 8 7 13 13 N 1.31511 * 119.99795 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 120.00060 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46877 * 89.99965 * 14 12 10 16 16 H 1.48495 * 109.47013 * 209.99976 * 14 12 10 17 17 H 1.48503 * 109.47301 * 330.00125 * 14 12 10 18 18 C 1.47023 * 125.64909 * 175.04557 * 5 3 2 19 19 C 1.52998 * 117.49680 * 214.33288 * 2 1 3 20 20 C 1.53002 * 60.00073 * 252.48625 * 19 2 1 21 21 H 1.09001 * 117.49834 * 107.48764 * 20 19 2 22 22 Br 1.96597 * 117.49670 * 252.51376 * 20 19 2 23 23 H 1.08998 * 109.47230 * 65.21218 * 1 2 3 24 24 H 1.09008 * 109.47327 * 185.21317 * 1 2 3 25 25 H 1.09007 * 109.47147 * 305.20945 * 1 2 3 26 26 H 1.09002 * 110.36575 * 322.92622 * 6 5 3 27 27 H 1.08990 * 110.36646 * 85.14505 * 6 5 3 28 28 H 1.09000 * 111.18476 * 204.97516 * 7 6 5 29 29 H 1.09005 * 111.02163 * 80.98305 * 7 6 5 30 30 H 0.96700 * 114.00024 * 296.15515 * 9 8 7 31 31 H 0.97001 * 119.99971 * 180.02562 * 13 12 10 32 32 H 1.08999 * 109.88450 * 59.56043 * 18 5 3 33 33 H 1.08994 * 109.88280 * 298.38754 * 18 5 3 34 34 H 1.09002 * 117.50024 * 359.97316 * 19 2 1 35 35 H 1.09004 * 117.50089 * 144.99706 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3596 0.0000 4 8 2.5875 1.8369 1.0378 5 7 2.3083 2.0451 -1.1533 6 6 1.9530 1.5455 -2.4940 7 6 2.8225 2.3806 -3.4743 8 6 2.8120 3.7703 -2.7844 9 8 1.6269 4.4937 -3.1226 10 6 4.0406 4.5597 -3.1566 11 1 4.7583 4.8318 -2.3968 12 6 4.2484 4.9345 -4.4671 13 7 3.3742 4.6035 -5.3922 14 14 5.7717 5.9123 -4.9286 15 1 6.8711 4.9786 -5.2816 16 1 5.4676 6.7819 -6.0932 17 1 6.1873 6.7537 -3.7776 18 6 2.8253 3.4154 -1.2825 19 6 2.2364 -1.1207 -0.7654 20 6 2.2369 -1.1210 0.7646 21 1 1.6119 -1.8587 1.2679 22 35 3.9237 -0.6774 1.6718 23 1 -0.3633 0.4308 -0.9330 24 1 -0.3634 -1.0235 0.0934 25 1 -0.3634 0.5926 0.8397 26 1 2.1955 0.4863 -2.5807 27 1 0.8936 1.7088 -2.6912 28 1 2.3643 2.4313 -4.4620 29 1 3.8353 1.9822 -3.5352 30 1 1.5519 4.7084 -4.0624 31 1 3.5206 4.8669 -6.3142 32 1 3.8443 3.4649 -0.8990 33 1 2.1860 4.1061 -0.7328 34 1 1.6111 -1.8583 -1.2686 35 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911526479.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:13 Heat of formation + Delta-G solvation = -70.813098 kcal Electronic energy + Delta-G solvation = -19701.589674 eV Core-core repulsion = 16553.072543 eV Total energy + Delta-G solvation = -3148.517131 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 317.041 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.38454 -39.31241 -37.74768 -36.06472 -34.18080 -31.64825 -31.11657 -30.05553 -29.23186 -27.26320 -24.80673 -23.08391 -22.89334 -21.38300 -19.74088 -19.10924 -17.79051 -17.00542 -16.91395 -16.58976 -16.26371 -15.91122 -14.91007 -14.83197 -14.40503 -14.10730 -13.84164 -13.58694 -13.28458 -13.25580 -13.13597 -13.11675 -12.66173 -12.64922 -12.45497 -12.29868 -12.23960 -11.98219 -11.68640 -11.27561 -10.89008 -10.68097 -10.62187 -10.31232 -10.12908 -9.55258 -8.25961 -6.39576 0.71688 1.40057 1.43556 1.52223 1.59442 1.91141 2.36864 2.42681 2.99606 3.35343 3.43826 3.50805 3.84285 3.99895 4.02171 4.26606 4.42004 4.48161 4.58344 4.65744 4.70896 4.79984 4.84537 4.89288 4.94277 5.18039 5.21958 5.27707 5.47143 5.53005 5.76258 6.07201 6.59384 6.66582 7.16141 7.31024 7.42609 8.80247 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.022787 B = 0.004344 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.458807 B = 6443.827995 C = 7059.208244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.142 4.142 3 C 0.544 3.456 4 O -0.566 6.566 5 N -0.606 5.606 6 C 0.107 3.893 7 C -0.126 4.126 8 C 0.237 3.763 9 O -0.593 6.593 10 C -0.564 4.564 11 H 0.047 0.953 12 C 0.040 3.960 13 N -0.905 5.905 14 Si 0.956 3.044 15 H -0.274 1.274 16 H -0.276 1.276 17 H -0.279 1.279 18 C 0.132 3.868 19 C -0.122 4.122 20 C -0.096 4.096 21 H 0.178 0.822 22 Br -0.140 7.140 23 H 0.074 0.926 24 H 0.107 0.893 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.381 0.619 31 H 0.273 0.727 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.162 0.838 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.377 -16.331 5.946 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.147 4.147 3 C 0.333 3.667 4 O -0.445 6.445 5 N -0.338 5.338 6 C -0.015 4.015 7 C -0.165 4.165 8 C 0.197 3.803 9 O -0.402 6.402 10 C -0.602 4.602 11 H 0.066 0.934 12 C -0.161 4.161 13 N -0.544 5.544 14 Si 0.782 3.218 15 H -0.199 1.199 16 H -0.201 1.201 17 H -0.205 1.205 18 C 0.009 3.991 19 C -0.160 4.160 20 C -0.192 4.192 21 H 0.195 0.805 22 Br -0.058 7.058 23 H 0.093 0.907 24 H 0.126 0.874 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.232 0.768 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.180 0.820 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.736 -16.010 7.337 18.237 hybrid contribution 0.880 1.126 -0.930 1.705 sum -3.856 -14.884 6.408 16.658 Atomic orbital electron populations 1.21320 0.86730 1.04968 1.02966 1.21665 0.98176 0.87472 1.07343 1.19774 0.78635 0.86554 0.81753 1.90698 1.50594 1.70663 1.32515 1.48582 1.62498 1.15111 1.07617 1.22606 0.99423 0.99152 0.80272 1.23163 0.98628 0.96173 0.98529 1.19557 0.83525 0.89172 0.88093 1.86097 1.44190 1.77922 1.32016 1.21733 1.07195 1.37038 0.94270 0.93430 1.25533 0.99141 0.95591 0.95877 1.69678 1.36351 1.46156 1.02179 0.85591 0.79819 0.78758 0.77642 1.19906 1.20135 1.20462 1.21736 0.97177 0.82564 0.97662 1.23755 1.02757 0.98678 0.90827 1.25992 0.93373 1.02817 0.97056 0.80494 1.97409 1.32622 1.95233 1.80577 0.90721 0.87407 0.92626 0.88322 0.90873 0.90161 0.92626 0.76810 0.91761 0.92918 0.94061 0.81989 0.88359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 9.71 71.98 0.70 -1.10 16 2 C -0.14 -3.37 1.85 -52.93 -0.10 -3.47 16 3 C 0.54 19.59 6.51 87.65 0.57 20.16 16 4 O -0.57 -24.72 15.59 -3.03 -0.05 -24.76 16 5 N -0.61 -23.19 3.33 -810.82 -2.70 -25.89 16 6 C 0.11 3.52 6.64 87.02 0.58 4.10 16 7 C -0.13 -5.23 5.61 32.15 0.18 -5.05 16 8 C 0.24 11.44 0.85 -10.35 -0.01 11.43 16 9 O -0.59 -29.73 13.07 -148.98 -1.95 -31.68 16 10 C -0.56 -30.02 8.21 25.60 0.21 -29.81 16 11 H 0.05 2.61 7.55 -2.91 -0.02 2.59 16 12 C 0.04 2.05 5.28 84.66 0.45 2.49 16 13 N -0.90 -45.43 10.67 21.45 0.23 -45.20 16 14 Si 0.96 41.37 29.54 68.60 2.03 43.39 16 15 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 16 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 18 C 0.13 6.11 6.22 86.73 0.54 6.65 16 19 C -0.12 -2.13 8.14 30.59 0.25 -1.88 16 20 C -0.10 -1.97 6.65 30.60 0.20 -1.77 16 21 H 0.18 2.35 8.14 -2.39 -0.02 2.33 16 22 Br -0.14 -4.05 31.82 -20.37 -0.65 -4.70 16 23 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.11 1.05 8.09 -2.38 -0.02 1.03 16 25 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.10 2.52 5.90 -2.39 -0.01 2.50 16 27 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.08 3.43 7.64 -2.39 -0.02 3.41 16 29 H 0.05 2.40 8.04 -2.38 -0.02 2.38 16 30 H 0.38 19.13 7.23 -74.06 -0.54 18.59 16 31 H 0.27 13.00 8.31 -92.71 -0.77 12.23 16 32 H 0.05 2.59 7.65 -2.39 -0.02 2.58 16 33 H 0.04 2.02 8.07 -2.39 -0.02 2.00 16 34 H 0.16 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.10 2.07 7.72 -2.39 -0.02 2.05 16 Total: -1.00 -63.72 307.90 1.05 -62.67 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.57 Total: 24.42 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 3.57 Total: 1.75 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: -2.47 Total: -71.09 kcal Atomic # 8 Polarization: -54.45 SS G_CDS: -2.00 Total: -56.45 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 35 Polarization: -4.05 SS G_CDS: -0.65 Total: -4.70 kcal Total: -63.72 1.05 -62.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911526479.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.144 kcal (2) G-P(sol) polarization free energy of solvation -63.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds