Wall clock time and date at job start Tue Mar 31 2020 11:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50694 * 115.55233 * 2 1 4 4 O 1.21284 * 120.00026 * 260.38141 * 3 2 1 5 5 N 1.34778 * 120.00139 * 80.38355 * 3 2 1 6 6 C 1.47422 * 125.64785 * 4.68365 * 5 3 2 7 7 C 1.54907 * 104.83082 * 204.09294 * 6 5 3 8 8 C 1.55155 * 101.58450 * 322.98898 * 7 6 5 9 9 O 1.42900 * 110.72344 * 277.14285 * 8 7 6 10 10 C 1.50697 * 110.87469 * 153.93518 * 8 7 6 11 11 H 1.08000 * 119.99965 * 6.02041 * 10 8 7 12 12 C 1.37874 * 120.00496 * 186.02224 * 10 8 7 13 13 N 1.31512 * 120.00480 * 186.82689 * 12 10 8 14 14 Si 1.86804 * 119.99827 * 6.82958 * 12 10 8 15 15 H 1.48500 * 109.47186 * 84.81058 * 14 12 10 16 16 H 1.48499 * 109.47156 * 204.81226 * 14 12 10 17 17 H 1.48501 * 109.47058 * 324.81279 * 14 12 10 18 18 C 1.47031 * 125.64692 * 184.64412 * 5 3 2 19 19 C 1.52998 * 117.51923 * 214.29397 * 2 1 3 20 20 C 1.52996 * 60.00024 * 252.52212 * 19 2 1 21 21 H 1.09002 * 117.52079 * 252.51399 * 20 19 2 22 22 Br 1.96601 * 117.49696 * 107.49097 * 20 19 2 23 23 H 1.09007 * 109.46590 * 54.82407 * 1 2 3 24 24 H 1.08996 * 109.47244 * 174.81951 * 1 2 3 25 25 H 1.08997 * 109.47288 * 294.82309 * 1 2 3 26 26 H 1.08998 * 110.36608 * 322.93187 * 6 5 3 27 27 H 1.09002 * 110.36470 * 85.14776 * 6 5 3 28 28 H 1.08999 * 111.00333 * 204.92059 * 7 6 5 29 29 H 1.08995 * 111.00763 * 81.06741 * 7 6 5 30 30 H 0.96705 * 113.99395 * 293.51887 * 9 8 7 31 31 H 0.96997 * 120.00183 * 179.97438 * 13 12 10 32 32 H 1.08997 * 109.88263 * 59.55568 * 18 5 3 33 33 H 1.09003 * 109.87911 * 298.39297 * 18 5 3 34 34 H 1.09007 * 117.49725 * 0.02562 * 19 2 1 35 35 H 1.09003 * 117.50028 * 145.03143 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3595 0.0000 4 8 2.5999 1.8310 -1.0356 5 7 2.2947 2.0517 1.1508 6 6 1.9189 1.5614 2.4894 7 6 1.6467 2.8413 3.3184 8 6 2.7340 3.8037 2.7718 9 8 3.9855 3.5744 3.4223 10 6 2.3082 5.2406 2.9304 11 1 1.3999 5.4789 3.4639 12 6 3.0782 6.2510 2.3946 13 7 2.7818 7.5074 2.6458 14 14 4.5424 5.8354 1.3115 15 1 4.0827 5.6326 -0.0859 16 1 5.5217 6.9509 1.3536 17 1 5.1867 4.5922 1.8060 18 6 2.8162 3.4204 1.2792 19 6 2.2369 -1.1210 -0.7645 20 6 2.2363 -1.1207 0.7654 21 1 3.1710 -0.8746 1.2694 22 35 1.1086 -2.4510 1.6730 23 1 -0.3633 0.5921 -0.8401 24 1 -0.3633 -1.0234 -0.0928 25 1 -0.3634 0.4314 0.9327 26 1 1.0191 0.9491 2.4303 27 1 2.7374 0.9904 2.9278 28 1 1.7893 2.6551 4.3828 29 1 0.6472 3.2290 3.1217 30 1 3.9870 3.7997 4.3628 31 1 3.3237 8.2183 2.2691 32 1 2.2098 4.1052 0.6865 33 1 3.8529 3.4550 0.9440 34 1 1.6119 -1.8586 -1.2681 35 1 3.1721 -0.8751 -1.2676 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911526480.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:20 Heat of formation + Delta-G solvation = -44.448450 kcal Electronic energy + Delta-G solvation = -19826.630200 eV Core-core repulsion = 16679.256326 eV Total energy + Delta-G solvation = -3147.373874 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 317.041 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.23411 -38.12097 -36.68588 -34.60033 -32.48045 -30.53025 -30.12331 -28.96134 -28.55784 -25.50562 -23.33482 -22.36672 -21.65347 -19.81804 -18.66724 -17.32455 -16.92747 -15.97615 -15.59965 -14.97151 -14.60899 -14.28336 -14.11353 -13.47160 -13.10308 -13.02185 -12.75631 -12.70294 -12.39598 -11.97490 -11.86779 -11.83158 -11.48394 -11.41006 -10.94763 -10.73793 -10.65716 -10.31914 -10.20709 -10.04240 -9.88218 -9.47665 -9.13057 -8.79227 -8.53934 -8.21999 -6.28544 -4.40842 1.31681 2.72203 3.03655 3.27164 3.34944 3.44451 3.55224 4.19487 4.34598 4.36294 4.50495 4.75115 5.01988 5.14651 5.17797 5.28610 5.48211 5.49762 5.56644 5.60547 5.65199 5.70950 5.88720 6.02453 6.07178 6.41405 6.48337 6.57067 6.67887 6.99471 7.41288 7.84950 8.12953 8.37600 8.68015 8.85216 9.34478 10.81576 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.027429 B = 0.004441 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.578507 B = 6303.791692 C = 6745.374364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.123 4.123 3 C 0.556 3.444 4 O -0.539 6.539 5 N -0.601 5.601 6 C 0.102 3.898 7 C -0.145 4.145 8 C 0.217 3.783 9 O -0.575 6.575 10 C -0.554 4.554 11 H 0.082 0.918 12 C 0.092 3.908 13 N -0.882 5.882 14 Si 0.863 3.137 15 H -0.278 1.278 16 H -0.294 1.294 17 H -0.232 1.232 18 C 0.108 3.892 19 C -0.122 4.122 20 C -0.111 4.111 21 H 0.140 0.860 22 Br -0.112 7.112 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.368 0.632 31 H 0.268 0.732 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.116 0.884 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.074 -20.525 -1.169 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.128 4.128 3 C 0.342 3.658 4 O -0.417 6.417 5 N -0.334 5.334 6 C -0.021 4.021 7 C -0.183 4.183 8 C 0.177 3.823 9 O -0.382 6.382 10 C -0.591 4.591 11 H 0.100 0.900 12 C -0.114 4.114 13 N -0.518 5.518 14 Si 0.690 3.310 15 H -0.204 1.204 16 H -0.221 1.221 17 H -0.155 1.155 18 C -0.013 4.013 19 C -0.161 4.161 20 C -0.208 4.208 21 H 0.158 0.842 22 Br -0.031 7.031 23 H 0.091 0.909 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.215 0.785 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.134 0.866 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.021 -20.777 -2.083 21.265 hybrid contribution 0.826 0.485 -0.136 0.967 sum -3.196 -20.292 -2.219 20.661 Atomic orbital electron populations 1.21411 0.88856 1.03431 1.03484 1.21735 0.97283 0.89227 1.04559 1.18962 0.79274 0.84847 0.82719 1.90710 1.49367 1.70006 1.31571 1.48619 1.61793 1.16440 1.06517 1.22397 0.99429 0.97703 0.82586 1.23313 1.01522 0.94489 0.98980 1.19931 0.81099 0.94041 0.87278 1.86453 1.35970 1.89277 1.26467 1.21204 1.11376 0.87708 1.38818 0.90022 1.24962 0.96878 0.94649 0.94912 1.69913 1.39678 0.99305 1.42882 0.87253 0.83257 0.79552 0.80969 1.20406 1.22085 1.15525 1.22726 0.98969 0.80804 0.98807 1.23407 1.03409 0.98438 0.90826 1.25808 1.00893 0.97539 0.96526 0.84185 1.97328 1.69513 1.56370 1.79877 0.90883 0.90635 0.90890 0.91263 0.91628 0.90470 0.90175 0.78463 0.92188 0.89751 0.91837 0.86591 0.86701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.01 37.16 0.33 -0.93 16 2 C -0.12 -1.60 1.55 -155.67 -0.24 -1.84 16 3 C 0.56 9.96 7.01 -10.99 -0.08 9.89 16 4 O -0.54 -11.70 17.33 5.55 0.10 -11.61 16 5 N -0.60 -11.21 3.33 -170.52 -0.57 -11.77 16 6 C 0.10 1.57 6.17 -2.53 -0.02 1.55 16 7 C -0.14 -2.52 6.23 -24.58 -0.15 -2.67 16 8 C 0.22 4.71 0.69 -89.94 -0.06 4.65 16 9 O -0.58 -12.16 10.81 -35.23 -0.38 -12.54 16 10 C -0.55 -14.41 8.70 -34.44 -0.30 -14.71 16 11 H 0.08 2.28 8.03 -52.49 -0.42 1.85 16 12 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 13 N -0.88 -25.85 13.96 55.43 0.77 -25.08 16 14 Si 0.86 21.64 23.93 -169.99 -4.07 17.57 16 15 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 17 H -0.23 -5.73 5.29 56.52 0.30 -5.43 16 18 C 0.11 2.42 4.32 -3.06 -0.01 2.41 16 19 C -0.12 -1.31 9.66 -26.73 -0.26 -1.57 16 20 C -0.11 -1.23 6.02 -26.73 -0.16 -1.39 16 21 H 0.14 1.59 8.14 -51.93 -0.42 1.17 16 22 Br -0.11 -1.12 32.45 -68.01 -2.21 -3.33 16 23 H 0.07 0.83 8.14 -51.92 -0.42 0.40 16 24 H 0.07 0.70 7.04 -51.93 -0.37 0.34 16 25 H 0.07 0.80 7.08 -51.93 -0.37 0.44 16 26 H 0.07 0.91 6.52 -51.93 -0.34 0.57 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 30 H 0.37 6.62 9.07 45.56 0.41 7.03 16 31 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.08 2.05 7.47 -51.93 -0.39 1.66 16 33 H 0.06 1.53 5.40 -51.93 -0.28 1.25 16 34 H 0.12 1.01 8.14 -51.92 -0.42 0.59 16 35 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 301.95 15.07 4.55 4.55 Total: -1.00 -31.13 301.95 -6.79 -37.92 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -3.94 Total: 6.45 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -1.04 Total: -2.16 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.21 Total: -36.85 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.28 Total: -24.15 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.07 Total: 17.57 kcal Atomic # 35 Polarization: -1.12 SS G_CDS: -2.21 Total: -3.33 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.13 -6.79 -37.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911526480.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.533 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds