Wall clock time and date at job start Tue Mar 31 2020 11:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50694 * 115.55233 * 2 1 4 4 O 1.21284 * 120.00026 * 260.38141 * 3 2 1 5 5 N 1.34778 * 120.00139 * 80.38355 * 3 2 1 6 6 C 1.47422 * 125.64785 * 4.68365 * 5 3 2 7 7 C 1.54907 * 104.83082 * 204.09294 * 6 5 3 8 8 C 1.55155 * 101.58450 * 322.98898 * 7 6 5 9 9 O 1.42900 * 110.72344 * 277.14285 * 8 7 6 10 10 C 1.50697 * 110.87469 * 153.93518 * 8 7 6 11 11 H 1.08000 * 119.99965 * 6.02041 * 10 8 7 12 12 C 1.37874 * 120.00496 * 186.02224 * 10 8 7 13 13 N 1.31512 * 120.00480 * 186.82689 * 12 10 8 14 14 Si 1.86804 * 119.99827 * 6.82958 * 12 10 8 15 15 H 1.48500 * 109.47186 * 84.81058 * 14 12 10 16 16 H 1.48499 * 109.47156 * 204.81226 * 14 12 10 17 17 H 1.48501 * 109.47058 * 324.81279 * 14 12 10 18 18 C 1.47031 * 125.64692 * 184.64412 * 5 3 2 19 19 C 1.52998 * 117.51923 * 214.29397 * 2 1 3 20 20 C 1.52996 * 60.00024 * 252.52212 * 19 2 1 21 21 H 1.09002 * 117.52079 * 252.51399 * 20 19 2 22 22 Br 1.96601 * 117.49696 * 107.49097 * 20 19 2 23 23 H 1.09007 * 109.46590 * 54.82407 * 1 2 3 24 24 H 1.08996 * 109.47244 * 174.81951 * 1 2 3 25 25 H 1.08997 * 109.47288 * 294.82309 * 1 2 3 26 26 H 1.08998 * 110.36608 * 322.93187 * 6 5 3 27 27 H 1.09002 * 110.36470 * 85.14776 * 6 5 3 28 28 H 1.08999 * 111.00333 * 204.92059 * 7 6 5 29 29 H 1.08995 * 111.00763 * 81.06741 * 7 6 5 30 30 H 0.96705 * 113.99395 * 293.51887 * 9 8 7 31 31 H 0.96997 * 120.00183 * 179.97438 * 13 12 10 32 32 H 1.08997 * 109.88263 * 59.55568 * 18 5 3 33 33 H 1.09003 * 109.87911 * 298.39297 * 18 5 3 34 34 H 1.09007 * 117.49725 * 0.02562 * 19 2 1 35 35 H 1.09003 * 117.50028 * 145.03143 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3595 0.0000 4 8 2.5999 1.8310 -1.0356 5 7 2.2947 2.0517 1.1508 6 6 1.9189 1.5614 2.4894 7 6 1.6467 2.8413 3.3184 8 6 2.7340 3.8037 2.7718 9 8 3.9855 3.5744 3.4223 10 6 2.3082 5.2406 2.9304 11 1 1.3999 5.4789 3.4639 12 6 3.0782 6.2510 2.3946 13 7 2.7818 7.5074 2.6458 14 14 4.5424 5.8354 1.3115 15 1 4.0827 5.6326 -0.0859 16 1 5.5217 6.9509 1.3536 17 1 5.1867 4.5922 1.8060 18 6 2.8162 3.4204 1.2792 19 6 2.2369 -1.1210 -0.7645 20 6 2.2363 -1.1207 0.7654 21 1 3.1710 -0.8746 1.2694 22 35 1.1086 -2.4510 1.6730 23 1 -0.3633 0.5921 -0.8401 24 1 -0.3633 -1.0234 -0.0928 25 1 -0.3634 0.4314 0.9327 26 1 1.0191 0.9491 2.4303 27 1 2.7374 0.9904 2.9278 28 1 1.7893 2.6551 4.3828 29 1 0.6472 3.2290 3.1217 30 1 3.9870 3.7997 4.3628 31 1 3.3237 8.2183 2.2691 32 1 2.2098 4.1052 0.6865 33 1 3.8529 3.4550 0.9440 34 1 1.6119 -1.8586 -1.2681 35 1 3.1721 -0.8751 -1.2676 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911526480.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:17 Heat of formation + Delta-G solvation = -67.644277 kcal Electronic energy + Delta-G solvation = -19827.636047 eV Core-core repulsion = 16679.256326 eV Total energy + Delta-G solvation = -3148.379721 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 317.041 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.58710 -39.57856 -37.93847 -36.22438 -34.56712 -31.87964 -31.19877 -30.40099 -29.62503 -27.30588 -24.86313 -23.37849 -22.80106 -21.54877 -19.98591 -19.23712 -18.17453 -17.53087 -16.93667 -16.73796 -16.14301 -15.78665 -15.43887 -14.92270 -14.63143 -14.44879 -14.16052 -14.00194 -13.66410 -13.52126 -13.38928 -13.13337 -12.70330 -12.65301 -12.45711 -12.33008 -12.13379 -12.05018 -11.57337 -11.20029 -11.07065 -10.88081 -10.73611 -10.56071 -10.31635 -9.76449 -8.45381 -6.56710 0.45262 1.26390 1.32576 1.37734 1.50174 1.81284 2.25643 2.27705 2.91204 3.26399 3.31947 3.45717 3.55651 3.75337 3.80698 4.13818 4.25286 4.33719 4.40497 4.52357 4.68157 4.70265 4.75795 4.79539 4.82290 4.93853 5.07214 5.17834 5.19737 5.36246 5.47339 6.03287 6.43871 6.56853 6.95192 7.14013 7.28702 8.68633 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.027429 B = 0.004441 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.578507 B = 6303.791692 C = 6745.374364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.135 4.135 3 C 0.551 3.449 4 O -0.586 6.586 5 N -0.605 5.605 6 C 0.108 3.892 7 C -0.137 4.137 8 C 0.215 3.785 9 O -0.578 6.578 10 C -0.545 4.545 11 H 0.057 0.943 12 C 0.049 3.951 13 N -0.925 5.925 14 Si 0.913 3.087 15 H -0.293 1.293 16 H -0.294 1.294 17 H -0.223 1.223 18 C 0.111 3.889 19 C -0.111 4.111 20 C -0.100 4.100 21 H 0.139 0.861 22 Br -0.094 7.094 23 H 0.065 0.935 24 H 0.098 0.902 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.074 0.926 30 H 0.383 0.617 31 H 0.269 0.731 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.142 0.858 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.476 -23.817 -0.460 24.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.140 4.140 3 C 0.340 3.660 4 O -0.467 6.467 5 N -0.337 5.337 6 C -0.014 4.014 7 C -0.175 4.175 8 C 0.174 3.826 9 O -0.387 6.387 10 C -0.582 4.582 11 H 0.075 0.925 12 C -0.153 4.153 13 N -0.564 5.564 14 Si 0.740 3.260 15 H -0.220 1.220 16 H -0.221 1.221 17 H -0.146 1.146 18 C -0.012 4.012 19 C -0.150 4.150 20 C -0.196 4.196 21 H 0.157 0.843 22 Br -0.012 7.012 23 H 0.084 0.916 24 H 0.116 0.884 25 H 0.093 0.907 26 H 0.118 0.882 27 H 0.101 0.899 28 H 0.123 0.877 29 H 0.093 0.907 30 H 0.233 0.767 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.160 0.840 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.431 -24.106 -1.334 24.546 hybrid contribution 0.896 1.477 -0.326 1.758 sum -3.535 -22.629 -1.661 22.964 Atomic orbital electron populations 1.21435 0.87280 1.04734 1.03323 1.21606 0.98075 0.86717 1.07574 1.19864 0.78237 0.86287 0.81566 1.90679 1.51239 1.71575 1.33157 1.48704 1.61697 1.15025 1.08243 1.22551 1.01403 0.97006 0.80400 1.23255 0.99403 0.93973 1.00897 1.19777 0.82727 0.92565 0.87508 1.86396 1.35419 1.89058 1.27816 1.21524 1.09832 0.90145 1.36736 0.92470 1.25543 0.98990 0.94662 0.96086 1.70005 1.41249 1.00190 1.44929 0.86484 0.81199 0.79405 0.78934 1.21970 1.22144 1.14602 1.22330 0.97276 0.82920 0.98686 1.23548 1.03131 0.97333 0.90961 1.25757 1.00475 0.96504 0.96892 0.84314 1.97358 1.68988 1.55361 1.79527 0.91629 0.88367 0.90732 0.88178 0.89930 0.87665 0.90706 0.76725 0.92209 0.92815 0.93966 0.84046 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 9.01 71.98 0.65 -1.48 16 2 C -0.14 -3.16 1.55 -52.93 -0.08 -3.25 16 3 C 0.55 19.28 7.01 87.65 0.61 19.90 16 4 O -0.59 -25.74 17.33 -3.04 -0.05 -25.80 16 5 N -0.60 -21.83 3.33 -811.78 -2.70 -24.53 16 6 C 0.11 2.99 6.17 86.85 0.54 3.53 16 7 C -0.14 -4.43 6.23 31.98 0.20 -4.23 16 8 C 0.21 9.14 0.69 -10.35 -0.01 9.14 16 9 O -0.58 -23.39 10.81 -148.98 -1.61 -25.00 16 10 C -0.54 -28.64 8.70 25.60 0.22 -28.42 16 11 H 0.06 3.25 8.03 -2.91 -0.02 3.22 16 12 C 0.05 2.75 5.47 84.65 0.46 3.22 16 13 N -0.93 -55.67 13.96 21.45 0.30 -55.37 16 14 Si 0.91 45.97 23.93 68.60 1.64 47.61 16 15 H -0.29 -15.28 7.11 99.48 0.71 -14.57 16 16 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 17 H -0.22 -10.82 5.29 99.48 0.53 -10.29 16 18 C 0.11 4.99 4.32 86.73 0.37 5.36 16 19 C -0.11 -2.07 9.66 30.59 0.30 -1.78 16 20 C -0.10 -1.86 6.02 30.59 0.18 -1.68 16 21 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 22 Br -0.09 -1.50 32.45 -20.37 -0.66 -2.16 16 23 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 24 H 0.10 1.44 7.04 -2.39 -0.02 1.43 16 25 H 0.07 1.40 7.08 -2.39 -0.02 1.38 16 26 H 0.10 2.21 6.52 -2.39 -0.02 2.19 16 27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.07 2.51 8.04 -2.39 -0.02 2.49 16 30 H 0.38 12.89 9.07 -74.05 -0.67 12.22 16 31 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 32 H 0.05 2.70 7.47 -2.39 -0.02 2.68 16 33 H 0.04 2.06 5.40 -2.39 -0.01 2.05 16 34 H 0.14 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -69.20 301.95 0.62 -68.58 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.26 Total: 16.36 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 3.45 Total: 0.31 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -2.40 Total: -79.91 kcal Atomic # 8 Polarization: -49.13 SS G_CDS: -1.66 Total: -50.80 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.64 Total: 47.61 kcal Atomic # 35 Polarization: -1.50 SS G_CDS: -0.66 Total: -2.16 kcal Total: -69.20 0.62 -68.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911526480.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.934 kcal (2) G-P(sol) polarization free energy of solvation -69.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds