Wall clock time and date at job start Tue Mar 31 2020 11:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 115.54917 * 2 1 4 4 O 1.21275 * 119.99815 * 100.42085 * 3 2 1 5 5 N 1.34773 * 119.99978 * 280.41721 * 3 2 1 6 6 C 1.47025 * 125.65039 * 354.85212 * 5 3 2 7 7 C 1.54317 * 107.26897 * 181.09326 * 6 5 3 8 8 C 1.55157 * 102.94874 * 22.18954 * 7 6 5 9 9 O 1.42898 * 111.00106 * 82.57096 * 8 7 6 10 10 C 1.50696 * 111.03841 * 206.41000 * 8 7 6 11 11 H 1.08007 * 119.99762 * 115.39511 * 10 8 7 12 12 C 1.37874 * 120.00299 * 295.39001 * 10 8 7 13 13 N 1.31517 * 119.99658 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 120.00178 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47075 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46928 * 120.00310 * 14 12 10 17 17 H 1.48497 * 109.47521 * 240.00279 * 14 12 10 18 18 C 1.47427 * 125.64713 * 174.88553 * 5 3 2 19 19 C 1.53003 * 117.49845 * 214.33536 * 2 1 3 20 20 C 1.52996 * 117.51720 * 145.70490 * 2 1 3 21 21 H 1.09006 * 117.49413 * 214.97048 * 20 2 1 22 22 Br 1.96596 * 117.50252 * 359.97438 * 20 2 1 23 23 H 1.09000 * 109.47079 * 54.17039 * 1 2 3 24 24 H 1.09000 * 109.46841 * 174.16828 * 1 2 3 25 25 H 1.08997 * 109.47330 * 294.16877 * 1 2 3 26 26 H 1.09003 * 109.87982 * 300.50691 * 6 5 3 27 27 H 1.08997 * 109.88134 * 61.67090 * 6 5 3 28 28 H 1.09006 * 110.72161 * 263.82619 * 7 6 5 29 29 H 1.09005 * 110.71985 * 140.55714 * 7 6 5 30 30 H 0.96700 * 114.00191 * 67.80973 * 9 8 7 31 31 H 0.97000 * 120.00062 * 179.97438 * 13 12 10 32 32 H 1.08999 * 110.36168 * 37.00072 * 18 5 3 33 33 H 1.08993 * 110.46192 * 274.72839 * 18 5 3 34 34 H 1.09002 * 117.50044 * 359.96767 * 19 2 1 35 35 H 1.09000 * 117.49936 * 144.99646 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 8 2.6128 1.8248 1.0330 5 7 2.2802 2.0587 -1.1479 6 6 1.8975 1.5743 -2.4823 7 6 2.2142 2.7019 -3.4872 8 6 3.2813 3.5443 -2.7395 9 8 4.5823 2.9725 -2.8893 10 6 3.2664 4.9762 -3.2090 11 1 2.9906 5.7657 -2.5255 12 6 3.6050 5.2785 -4.5109 13 7 3.9405 4.3170 -5.3432 14 14 3.5859 7.0533 -5.0929 15 1 3.1761 7.9373 -3.9723 16 1 4.9440 7.4374 -5.5547 17 1 2.6230 7.1962 -6.2143 18 6 2.7923 3.4354 -1.2737 19 6 2.2364 -1.1207 -0.7655 20 6 2.2368 -1.1210 0.7645 21 1 3.1721 -0.8750 1.2676 22 35 1.1098 -2.4513 1.6728 23 1 -0.3633 0.6016 -0.8332 24 1 -0.3633 -1.0224 -0.1044 25 1 -0.3634 0.4207 0.9375 26 1 2.4729 0.6828 -2.7321 27 1 0.8315 1.3479 -2.5029 28 1 1.3248 3.2986 -3.6902 29 1 2.6238 2.2920 -4.4104 30 1 4.9303 3.0173 -3.7904 31 1 4.1784 4.5296 -6.2592 32 1 3.6212 3.5961 -0.5843 33 1 1.9972 4.1565 -1.0844 34 1 1.6112 -1.8583 -1.2687 35 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911526481.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:25 Heat of formation + Delta-G solvation = -57.680146 kcal Electronic energy + Delta-G solvation = -19551.153904 eV Core-core repulsion = 16403.206261 eV Total energy + Delta-G solvation = -3147.947643 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 317.041 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.06559 -37.80829 -36.52930 -34.35448 -32.23574 -30.46347 -29.75983 -28.74970 -28.33102 -25.47957 -23.38353 -22.12142 -21.30607 -19.70742 -18.46211 -17.27925 -16.68075 -15.60964 -15.40341 -15.02525 -14.44138 -14.34762 -13.75461 -13.41899 -13.03912 -12.95098 -12.66406 -12.25804 -11.92640 -11.82424 -11.74888 -11.45110 -11.39541 -11.29794 -10.94109 -10.70810 -10.56965 -10.51215 -10.10328 -9.97494 -9.73370 -9.47362 -9.33697 -8.74795 -8.28148 -8.07270 -6.35378 -4.43562 1.41941 2.86877 3.11164 3.14840 3.24476 3.28869 3.54626 4.21652 4.31364 4.41926 4.65949 4.87666 4.94181 5.38210 5.48377 5.57747 5.58965 5.62513 5.68258 5.76337 5.81534 5.97052 6.05127 6.24227 6.36650 6.58035 6.81976 6.89914 7.24806 7.27514 7.67512 7.92458 8.03027 8.50371 8.59959 9.25382 9.36781 10.72061 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.046530 B = 0.003200 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.619998 B = 8746.615305 C = 8853.367984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.124 4.124 3 C 0.557 3.443 4 O -0.547 6.547 5 N -0.598 5.598 6 C 0.100 3.900 7 C -0.138 4.138 8 C 0.249 3.751 9 O -0.584 6.584 10 C -0.536 4.536 11 H 0.066 0.934 12 C 0.073 3.927 13 N -0.896 5.896 14 Si 0.903 3.097 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.282 1.282 18 C 0.118 3.882 19 C -0.139 4.139 20 C -0.093 4.093 21 H 0.142 0.858 22 Br -0.117 7.117 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.384 0.616 31 H 0.268 0.732 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.023 -13.314 6.410 16.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.128 4.128 3 C 0.344 3.656 4 O -0.425 6.425 5 N -0.329 5.329 6 C -0.022 4.022 7 C -0.177 4.177 8 C 0.208 3.792 9 O -0.393 6.393 10 C -0.575 4.575 11 H 0.084 0.916 12 C -0.130 4.130 13 N -0.536 5.536 14 Si 0.730 3.270 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.208 1.208 18 C -0.003 4.003 19 C -0.177 4.177 20 C -0.189 4.189 21 H 0.160 0.840 22 Br -0.035 7.035 23 H 0.090 0.910 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.235 0.765 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.134 0.866 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.206 -13.705 7.798 17.337 hybrid contribution 0.285 1.259 -1.262 1.805 sum -6.921 -12.447 6.536 15.670 Atomic orbital electron populations 1.21381 0.89114 1.03321 1.03258 1.21670 0.97051 0.89623 1.04489 1.18875 0.79272 0.84715 0.82785 1.90683 1.49417 1.70575 1.31823 1.48509 1.61606 1.16264 1.06534 1.22221 0.98290 0.98976 0.82732 1.23195 1.01123 0.95517 0.97826 1.19583 0.80737 0.91168 0.87686 1.86109 1.33997 1.83229 1.36007 1.21505 1.47206 0.92288 0.96487 0.91586 1.24989 0.93632 0.98111 0.96243 1.69654 1.45862 1.31998 1.06049 0.86354 0.77864 0.84027 0.78708 1.19551 1.20736 1.20783 1.22431 0.98003 0.80527 0.99350 1.23550 1.03544 0.99330 0.91263 1.25622 1.00622 0.96687 0.96013 0.83977 1.97295 1.69835 1.56236 1.80145 0.90984 0.90749 0.91110 0.92195 0.92735 0.91351 0.89629 0.76506 0.92153 0.91002 0.90898 0.86619 0.86643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.04 37.16 0.34 -0.98 16 2 C -0.12 -1.70 1.82 -155.66 -0.28 -1.98 16 3 C 0.56 10.21 7.01 -10.98 -0.08 10.13 16 4 O -0.55 -11.94 17.22 5.56 0.10 -11.84 16 5 N -0.60 -11.32 3.33 -170.52 -0.57 -11.88 16 6 C 0.10 1.70 6.21 -3.07 -0.02 1.69 16 7 C -0.14 -2.81 5.51 -24.90 -0.14 -2.95 16 8 C 0.25 5.78 0.89 -89.62 -0.08 5.70 16 9 O -0.58 -14.42 13.19 -35.23 -0.46 -14.89 16 10 C -0.54 -13.53 8.25 -34.44 -0.28 -13.82 16 11 H 0.07 1.67 7.78 -52.48 -0.41 1.26 16 12 C 0.07 1.81 5.27 -17.82 -0.09 1.72 16 13 N -0.90 -22.32 10.74 55.43 0.60 -21.72 16 14 Si 0.90 19.65 29.54 -169.99 -5.02 14.63 16 15 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 18 C 0.12 2.56 6.11 -2.53 -0.02 2.55 16 19 C -0.14 -1.59 8.68 -26.73 -0.23 -1.82 16 20 C -0.09 -1.17 6.60 -26.73 -0.18 -1.34 16 21 H 0.14 1.90 8.14 -51.93 -0.42 1.48 16 22 Br -0.12 -1.31 32.47 -68.01 -2.21 -3.51 16 23 H 0.07 0.81 7.33 -51.93 -0.38 0.43 16 24 H 0.07 0.74 7.07 -51.93 -0.37 0.37 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.95 7.08 -51.93 -0.37 0.58 16 27 H 0.05 0.79 7.33 -51.93 -0.38 0.41 16 28 H 0.07 1.40 8.03 -51.93 -0.42 0.99 16 29 H 0.09 1.83 7.69 -51.93 -0.40 1.43 16 30 H 0.38 9.55 7.19 45.56 0.33 9.88 16 31 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 32 H 0.07 1.67 7.99 -51.93 -0.41 1.26 16 33 H 0.07 1.53 8.02 -51.93 -0.42 1.11 16 34 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.12 1.39 7.77 -51.93 -0.40 0.98 16 LS Contribution 309.21 15.07 4.66 4.66 Total: -1.00 -27.28 309.21 -8.00 -35.29 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -4.03 Total: 10.39 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -1.06 Total: -1.11 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.03 Total: -33.60 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.37 Total: -26.73 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 35 Polarization: -1.31 SS G_CDS: -2.21 Total: -3.51 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.28 -8.00 -35.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911526481.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.393 kcal (2) G-P(sol) polarization free energy of solvation -27.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds