Wall clock time and date at job start Tue Mar 31 2020 11:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 115.54917 * 2 1 4 4 O 1.21275 * 119.99815 * 100.42085 * 3 2 1 5 5 N 1.34773 * 119.99978 * 280.41721 * 3 2 1 6 6 C 1.47025 * 125.65039 * 354.85212 * 5 3 2 7 7 C 1.54317 * 107.26897 * 181.09326 * 6 5 3 8 8 C 1.55157 * 102.94874 * 22.18954 * 7 6 5 9 9 O 1.42898 * 111.00106 * 82.57096 * 8 7 6 10 10 C 1.50696 * 111.03841 * 206.41000 * 8 7 6 11 11 H 1.08007 * 119.99762 * 115.39511 * 10 8 7 12 12 C 1.37874 * 120.00299 * 295.39001 * 10 8 7 13 13 N 1.31517 * 119.99658 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 120.00178 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47075 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46928 * 120.00310 * 14 12 10 17 17 H 1.48497 * 109.47521 * 240.00279 * 14 12 10 18 18 C 1.47427 * 125.64713 * 174.88553 * 5 3 2 19 19 C 1.53003 * 117.49845 * 214.33536 * 2 1 3 20 20 C 1.52996 * 117.51720 * 145.70490 * 2 1 3 21 21 H 1.09006 * 117.49413 * 214.97048 * 20 2 1 22 22 Br 1.96596 * 117.50252 * 359.97438 * 20 2 1 23 23 H 1.09000 * 109.47079 * 54.17039 * 1 2 3 24 24 H 1.09000 * 109.46841 * 174.16828 * 1 2 3 25 25 H 1.08997 * 109.47330 * 294.16877 * 1 2 3 26 26 H 1.09003 * 109.87982 * 300.50691 * 6 5 3 27 27 H 1.08997 * 109.88134 * 61.67090 * 6 5 3 28 28 H 1.09006 * 110.72161 * 263.82619 * 7 6 5 29 29 H 1.09005 * 110.71985 * 140.55714 * 7 6 5 30 30 H 0.96700 * 114.00191 * 67.80973 * 9 8 7 31 31 H 0.97000 * 120.00062 * 179.97438 * 13 12 10 32 32 H 1.08999 * 110.36168 * 37.00072 * 18 5 3 33 33 H 1.08993 * 110.46192 * 274.72839 * 18 5 3 34 34 H 1.09002 * 117.50044 * 359.96767 * 19 2 1 35 35 H 1.09000 * 117.49936 * 144.99646 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 8 2.6128 1.8248 1.0330 5 7 2.2802 2.0587 -1.1479 6 6 1.8975 1.5743 -2.4823 7 6 2.2142 2.7019 -3.4872 8 6 3.2813 3.5443 -2.7395 9 8 4.5823 2.9725 -2.8893 10 6 3.2664 4.9762 -3.2090 11 1 2.9906 5.7657 -2.5255 12 6 3.6050 5.2785 -4.5109 13 7 3.9405 4.3170 -5.3432 14 14 3.5859 7.0533 -5.0929 15 1 3.1761 7.9373 -3.9723 16 1 4.9440 7.4374 -5.5547 17 1 2.6230 7.1962 -6.2143 18 6 2.7923 3.4354 -1.2737 19 6 2.2364 -1.1207 -0.7655 20 6 2.2368 -1.1210 0.7645 21 1 3.1721 -0.8750 1.2676 22 35 1.1098 -2.4513 1.6728 23 1 -0.3633 0.6016 -0.8332 24 1 -0.3633 -1.0224 -0.1044 25 1 -0.3634 0.4207 0.9375 26 1 2.4729 0.6828 -2.7321 27 1 0.8315 1.3479 -2.5029 28 1 1.3248 3.2986 -3.6902 29 1 2.6238 2.2920 -4.4104 30 1 4.9303 3.0173 -3.7904 31 1 4.1784 4.5296 -6.2592 32 1 3.6212 3.5961 -0.5843 33 1 1.9972 4.1565 -1.0844 34 1 1.6112 -1.8583 -1.2687 35 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911526481.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:23 Heat of formation + Delta-G solvation = -75.197059 kcal Electronic energy + Delta-G solvation = -19551.913495 eV Core-core repulsion = 16403.206261 eV Total energy + Delta-G solvation = -3148.707234 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 317.041 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -41.46018 -39.33610 -37.86705 -36.10212 -34.17034 -31.73904 -31.11006 -30.05654 -29.60146 -27.25441 -24.84229 -23.15143 -22.68823 -21.45202 -19.83139 -19.11123 -18.00708 -17.08456 -16.91699 -16.77231 -16.12588 -15.60945 -15.28347 -14.70480 -14.48297 -14.26618 -13.86078 -13.75996 -13.50355 -13.32781 -13.19693 -13.04847 -12.70245 -12.59736 -12.46442 -12.30423 -12.25116 -11.85591 -11.58888 -11.28382 -11.12415 -10.68309 -10.67987 -10.55842 -10.14501 -9.61824 -8.25001 -6.39642 0.44570 1.41229 1.45949 1.46620 1.55615 1.88139 2.34890 2.41289 3.00133 3.29863 3.37294 3.51775 3.79734 3.86210 4.02787 4.32332 4.37147 4.44628 4.58621 4.63299 4.67336 4.77930 4.79313 4.85878 4.90339 5.15574 5.20409 5.26404 5.46182 5.55517 5.77813 6.05764 6.55455 6.64659 7.04082 7.31749 7.42290 8.81083 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.046530 B = 0.003200 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.619998 B = 8746.615305 C = 8853.367984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.133 4.133 3 C 0.553 3.447 4 O -0.591 6.591 5 N -0.600 5.600 6 C 0.108 3.892 7 C -0.128 4.128 8 C 0.235 3.765 9 O -0.594 6.594 10 C -0.563 4.563 11 H 0.055 0.945 12 C 0.039 3.961 13 N -0.907 5.907 14 Si 0.959 3.041 15 H -0.275 1.275 16 H -0.281 1.281 17 H -0.274 1.274 18 C 0.122 3.878 19 C -0.116 4.116 20 C -0.098 4.098 21 H 0.128 0.872 22 Br -0.099 7.099 23 H 0.078 0.922 24 H 0.096 0.904 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.380 0.620 31 H 0.272 0.728 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.146 0.854 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.395 -14.799 5.673 17.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.137 4.137 3 C 0.342 3.658 4 O -0.472 6.472 5 N -0.330 5.330 6 C -0.014 4.014 7 C -0.167 4.167 8 C 0.195 3.805 9 O -0.404 6.404 10 C -0.601 4.601 11 H 0.073 0.927 12 C -0.163 4.163 13 N -0.546 5.546 14 Si 0.784 3.216 15 H -0.199 1.199 16 H -0.207 1.207 17 H -0.200 1.200 18 C 0.000 4.000 19 C -0.154 4.154 20 C -0.195 4.195 21 H 0.146 0.854 22 Br -0.017 7.017 23 H 0.097 0.903 24 H 0.114 0.886 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.231 0.769 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.164 0.836 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.594 -15.215 7.049 18.842 hybrid contribution 0.753 1.726 -0.986 2.126 sum -7.840 -13.489 6.062 16.738 Atomic orbital electron populations 1.21409 0.87199 1.04770 1.03205 1.21579 0.98093 0.87171 1.06879 1.19694 0.78391 0.86064 0.81663 1.90655 1.51254 1.72003 1.33280 1.48560 1.61514 1.15239 1.07733 1.22263 1.00735 0.97863 0.80494 1.22977 0.99713 0.96062 0.97935 1.19752 0.80850 0.90974 0.88918 1.86098 1.35138 1.83362 1.35768 1.21722 1.48249 0.93250 0.96903 0.92722 1.25566 0.93237 1.01250 0.96200 1.69707 1.45550 1.33111 1.06210 0.85501 0.77767 0.80174 0.78116 1.19949 1.20714 1.19969 1.22193 0.97264 0.82679 0.97894 1.23682 1.03247 0.97998 0.90475 1.25577 1.00216 0.96661 0.97057 0.85429 1.97305 1.69190 1.55143 1.80081 0.90310 0.88565 0.91885 0.90532 0.89151 0.91733 0.90698 0.76948 0.91846 0.93695 0.90738 0.83571 0.87116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.20 9.04 71.98 0.65 -1.55 16 2 C -0.13 -3.37 1.82 -52.93 -0.10 -3.46 16 3 C 0.55 19.98 7.01 87.66 0.61 20.60 16 4 O -0.59 -26.31 17.22 -3.01 -0.05 -26.36 16 5 N -0.60 -22.32 3.33 -811.81 -2.70 -25.02 16 6 C 0.11 3.43 6.21 86.73 0.54 3.97 16 7 C -0.13 -5.12 5.51 31.78 0.18 -4.94 16 8 C 0.24 11.05 0.89 -10.15 -0.01 11.04 16 9 O -0.59 -29.84 13.19 -148.98 -1.96 -31.81 16 10 C -0.56 -28.82 8.25 25.60 0.21 -28.61 16 11 H 0.05 2.84 7.78 -2.91 -0.02 2.81 16 12 C 0.04 1.93 5.27 84.65 0.45 2.38 16 13 N -0.91 -44.90 10.74 21.45 0.23 -44.67 16 14 Si 0.96 40.16 29.54 68.60 2.03 42.18 16 15 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 16 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 17 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 18 C 0.12 5.42 6.11 86.85 0.53 5.95 16 19 C -0.12 -2.30 8.68 30.60 0.27 -2.04 16 20 C -0.10 -2.29 6.60 30.59 0.20 -2.09 16 21 H 0.13 3.35 8.14 -2.38 -0.02 3.33 16 22 Br -0.10 -1.97 32.47 -20.37 -0.66 -2.63 16 23 H 0.08 1.49 7.33 -2.39 -0.02 1.47 16 24 H 0.10 1.54 7.07 -2.39 -0.02 1.52 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.08 2.21 7.08 -2.39 -0.02 2.19 16 27 H 0.09 2.28 7.33 -2.39 -0.02 2.26 16 28 H 0.06 2.59 8.03 -2.38 -0.02 2.57 16 29 H 0.07 3.15 7.69 -2.38 -0.02 3.13 16 30 H 0.38 19.22 7.19 -74.06 -0.53 18.69 16 31 H 0.27 12.80 8.31 -92.71 -0.77 12.03 16 32 H 0.04 2.19 7.99 -2.39 -0.02 2.17 16 33 H 0.07 3.21 8.02 -2.39 -0.02 3.19 16 34 H 0.15 2.04 8.14 -2.39 -0.02 2.03 16 35 H 0.11 2.37 7.77 -2.39 -0.02 2.35 16 Total: -1.00 -59.26 309.21 0.98 -58.28 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.57 Total: 28.80 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 3.53 Total: 1.24 kcal Atomic # 7 Polarization: -67.22 SS G_CDS: -2.47 Total: -69.69 kcal Atomic # 8 Polarization: -56.16 SS G_CDS: -2.02 Total: -58.17 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.18 kcal Atomic # 35 Polarization: -1.97 SS G_CDS: -0.66 Total: -2.63 kcal Total: -59.26 0.98 -58.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911526481.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.918 kcal (2) G-P(sol) polarization free energy of solvation -59.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds