Wall clock time and date at job start Tue Mar 31 2020 11:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 115.54935 * 2 1 4 4 O 1.21283 * 120.00024 * 258.42387 * 3 2 1 5 5 N 1.34770 * 119.99746 * 78.42047 * 3 2 1 6 6 C 1.47421 * 125.65239 * 354.77435 * 5 3 2 7 7 C 1.54912 * 104.83077 * 155.90644 * 6 5 3 8 8 C 1.55157 * 101.58285 * 37.01010 * 7 6 5 9 9 O 1.42904 * 110.71814 * 83.03647 * 8 7 6 10 10 C 1.50694 * 110.71985 * 206.13129 * 8 7 6 11 11 H 1.08007 * 120.00027 * 118.54649 * 10 8 7 12 12 C 1.37880 * 120.00284 * 298.54777 * 10 8 7 13 13 N 1.31512 * 119.99872 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99896 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47119 * 269.99858 * 14 12 10 16 16 H 1.48491 * 109.47308 * 30.00003 * 14 12 10 17 17 H 1.48507 * 109.46680 * 150.00113 * 14 12 10 18 18 C 1.47027 * 125.64343 * 174.81645 * 5 3 2 19 19 C 1.52998 * 117.51669 * 214.30082 * 2 1 3 20 20 C 1.53000 * 117.50053 * 145.67102 * 2 1 3 21 21 H 1.09005 * 117.49887 * 0.02562 * 20 2 1 22 22 Br 1.96600 * 117.49757 * 215.00392 * 20 2 1 23 23 H 1.08993 * 109.47615 * 55.00638 * 1 2 3 24 24 H 1.08998 * 109.46964 * 175.00481 * 1 2 3 25 25 H 1.09003 * 109.46892 * 295.00291 * 1 2 3 26 26 H 1.08996 * 110.36786 * 37.06879 * 6 5 3 27 27 H 1.09002 * 110.36689 * 274.74376 * 6 5 3 28 28 H 1.08996 * 111.00417 * 278.93133 * 7 6 5 29 29 H 1.09004 * 111.00400 * 155.08538 * 7 6 5 30 30 H 0.96699 * 113.99841 * 63.84581 * 9 8 7 31 31 H 0.97004 * 120.00165 * 179.97438 * 13 12 10 32 32 H 1.08997 * 109.88276 * 61.60645 * 18 5 3 33 33 H 1.09003 * 109.88608 * 300.43956 * 18 5 3 34 34 H 1.09000 * 117.50165 * 0.02562 * 19 2 1 35 35 H 1.08998 * 117.49756 * 145.02808 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 8 2.6317 1.8159 -1.0290 5 7 2.2592 2.0686 1.1434 6 6 1.6597 1.6863 2.4348 7 6 2.5084 2.4245 3.5000 8 6 2.8018 3.7706 2.7864 9 8 1.7083 4.6765 2.9465 10 6 4.0781 4.3816 3.3046 11 1 4.9086 4.5473 2.6342 12 6 4.1859 4.7291 4.6345 13 7 3.1749 4.5269 5.4509 14 14 5.7683 5.4858 5.2769 15 1 6.6792 4.4088 5.7412 16 1 6.4255 6.2558 4.1905 17 1 5.4581 6.3945 6.4099 18 6 2.9572 3.3520 1.3092 19 6 2.2369 -1.1209 -0.7647 20 6 2.2365 -1.1207 0.7653 21 1 1.6113 -1.8583 1.2685 22 35 3.9227 -0.6768 1.6735 23 1 -0.3634 0.5893 -0.8418 24 1 -0.3633 -1.0237 -0.0895 25 1 -0.3633 0.4344 0.9314 26 1 1.7247 0.6078 2.5787 27 1 0.6214 2.0144 2.4830 28 1 3.4313 1.8832 3.7080 29 1 1.9361 2.5834 4.4140 30 1 1.5455 4.9384 3.8630 31 1 3.2507 4.7710 6.3867 32 1 2.5080 4.1047 0.6614 33 1 4.0133 3.2337 1.0666 34 1 1.6120 -1.8584 -1.2683 35 1 3.1720 -0.8750 -1.2677 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911526482.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:28 Heat of formation + Delta-G solvation = -54.426603 kcal Electronic energy + Delta-G solvation = -19927.117378 eV Core-core repulsion = 16779.310819 eV Total energy + Delta-G solvation = -3147.806559 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 317.041 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.00369 -37.74692 -36.45052 -34.27991 -32.19763 -30.45328 -29.66222 -28.61536 -28.06867 -25.43929 -23.26546 -22.16838 -21.39756 -19.59034 -18.32001 -17.19087 -16.42529 -15.71577 -15.26060 -14.99943 -14.82281 -14.19140 -13.48950 -13.26757 -13.03465 -12.89708 -12.57410 -12.09599 -11.86144 -11.77645 -11.69470 -11.42512 -11.34150 -11.17601 -10.85687 -10.57755 -10.56440 -10.48532 -10.07892 -9.72685 -9.56785 -9.38028 -9.22587 -8.66576 -8.19691 -7.95370 -6.27540 -4.34681 1.60737 2.90621 3.19466 3.20776 3.27876 3.32561 3.57340 4.27759 4.34372 4.41302 4.67984 4.90308 5.01334 5.28999 5.46701 5.56871 5.58293 5.64449 5.76711 5.80933 5.96562 5.99548 6.08738 6.28306 6.48172 6.73262 6.95709 7.02220 7.36679 7.39216 7.74664 8.03340 8.12716 8.60122 8.68116 9.31856 9.40712 10.79809 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.020356 B = 0.005738 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.184527 B = 4878.780525 C = 5525.516384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.128 4.128 3 C 0.557 3.443 4 O -0.548 6.548 5 N -0.591 5.591 6 C 0.095 3.905 7 C -0.129 4.129 8 C 0.248 3.752 9 O -0.586 6.586 10 C -0.533 4.533 11 H 0.063 0.937 12 C 0.073 3.927 13 N -0.896 5.896 14 Si 0.900 3.100 15 H -0.279 1.279 16 H -0.272 1.272 17 H -0.284 1.284 18 C 0.125 3.875 19 C -0.125 4.125 20 C -0.121 4.121 21 H 0.142 0.858 22 Br -0.094 7.094 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.382 0.618 31 H 0.268 0.732 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 -13.706 -5.282 15.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.132 4.132 3 C 0.343 3.657 4 O -0.426 6.426 5 N -0.321 5.321 6 C -0.027 4.027 7 C -0.167 4.167 8 C 0.207 3.793 9 O -0.395 6.395 10 C -0.571 4.571 11 H 0.081 0.919 12 C -0.130 4.130 13 N -0.535 5.535 14 Si 0.728 3.272 15 H -0.205 1.205 16 H -0.197 1.197 17 H -0.210 1.210 18 C 0.004 3.996 19 C -0.163 4.163 20 C -0.218 4.218 21 H 0.160 0.840 22 Br -0.012 7.012 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.233 0.767 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.133 0.867 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.700 -13.382 -6.018 15.132 hybrid contribution 0.500 0.238 1.056 1.192 sum -3.200 -13.143 -4.963 14.409 Atomic orbital electron populations 1.21310 0.89263 1.02732 1.03476 1.21761 0.96808 0.89987 1.04661 1.18768 0.79570 0.84596 0.82732 1.90666 1.49576 1.70795 1.31611 1.48423 1.51987 1.22542 1.09194 1.22556 0.97291 0.99154 0.83724 1.23232 0.98880 0.97718 0.96911 1.19439 0.85991 0.86129 0.87694 1.86118 1.53284 1.66425 1.33696 1.21510 0.99249 1.41814 0.94540 0.91862 1.24968 0.96926 0.94527 0.96542 1.69694 1.30851 1.47704 1.05273 0.86450 0.83030 0.79179 0.78545 1.20532 1.19685 1.21006 1.22057 0.96056 0.82869 0.98634 1.23376 1.03219 0.98697 0.91030 1.25784 0.95299 1.04057 0.96642 0.83992 1.97483 1.30197 1.94405 1.79164 0.90954 0.91355 0.91033 0.91951 0.92333 0.91344 0.89642 0.76733 0.92253 0.92178 0.91032 0.86710 0.86930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.71 37.16 0.36 -0.82 16 2 C -0.13 -1.74 1.64 -155.66 -0.25 -1.99 16 3 C 0.56 10.42 6.00 -10.99 -0.07 10.35 16 4 O -0.55 -12.07 17.31 5.55 0.10 -11.97 16 5 N -0.59 -11.62 2.93 -170.52 -0.50 -12.12 16 6 C 0.10 1.73 5.83 -2.53 -0.01 1.72 16 7 C -0.13 -2.77 5.47 -24.58 -0.13 -2.90 16 8 C 0.25 5.94 0.85 -89.94 -0.08 5.86 16 9 O -0.59 -14.61 13.09 -35.23 -0.46 -15.07 16 10 C -0.53 -13.94 8.21 -34.44 -0.28 -14.22 16 11 H 0.06 1.68 7.57 -52.48 -0.40 1.28 16 12 C 0.07 1.87 5.26 -17.82 -0.09 1.77 16 13 N -0.90 -22.87 10.65 55.43 0.59 -22.28 16 14 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 C 0.13 2.85 6.23 -3.06 -0.02 2.83 16 19 C -0.12 -1.41 9.65 -26.73 -0.26 -1.67 16 20 C -0.12 -1.44 5.70 -26.73 -0.15 -1.60 16 21 H 0.14 1.31 8.14 -51.93 -0.42 0.88 16 22 Br -0.09 -1.43 31.10 -68.01 -2.11 -3.54 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 25 H 0.07 0.78 7.76 -51.93 -0.40 0.38 16 26 H 0.06 1.00 5.52 -51.93 -0.29 0.71 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.07 1.54 8.04 -51.93 -0.42 1.13 16 29 H 0.09 1.92 7.54 -51.93 -0.39 1.53 16 30 H 0.38 9.53 7.42 45.56 0.34 9.87 16 31 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 32 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 33 H 0.07 1.68 7.66 -51.93 -0.40 1.28 16 34 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 307.18 15.07 4.63 4.63 Total: -1.00 -28.63 307.18 -7.82 -36.44 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.04 Total: 9.24 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -0.99 Total: -0.67 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.09 Total: -34.40 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.37 Total: -27.04 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 35 Polarization: -1.43 SS G_CDS: -2.11 Total: -3.54 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.63 -7.82 -36.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911526482.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.982 kcal (2) G-P(sol) polarization free energy of solvation -28.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds