Wall clock time and date at job start Tue Mar 31 2020 11:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 115.54935 * 2 1 4 4 O 1.21283 * 120.00024 * 258.42387 * 3 2 1 5 5 N 1.34770 * 119.99746 * 78.42047 * 3 2 1 6 6 C 1.47421 * 125.65239 * 354.77435 * 5 3 2 7 7 C 1.54912 * 104.83077 * 155.90644 * 6 5 3 8 8 C 1.55157 * 101.58285 * 37.01010 * 7 6 5 9 9 O 1.42904 * 110.71814 * 83.03647 * 8 7 6 10 10 C 1.50694 * 110.71985 * 206.13129 * 8 7 6 11 11 H 1.08007 * 120.00027 * 118.54649 * 10 8 7 12 12 C 1.37880 * 120.00284 * 298.54777 * 10 8 7 13 13 N 1.31512 * 119.99872 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99896 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47119 * 269.99858 * 14 12 10 16 16 H 1.48491 * 109.47308 * 30.00003 * 14 12 10 17 17 H 1.48507 * 109.46680 * 150.00113 * 14 12 10 18 18 C 1.47027 * 125.64343 * 174.81645 * 5 3 2 19 19 C 1.52998 * 117.51669 * 214.30082 * 2 1 3 20 20 C 1.53000 * 117.50053 * 145.67102 * 2 1 3 21 21 H 1.09005 * 117.49887 * 0.02562 * 20 2 1 22 22 Br 1.96600 * 117.49757 * 215.00392 * 20 2 1 23 23 H 1.08993 * 109.47615 * 55.00638 * 1 2 3 24 24 H 1.08998 * 109.46964 * 175.00481 * 1 2 3 25 25 H 1.09003 * 109.46892 * 295.00291 * 1 2 3 26 26 H 1.08996 * 110.36786 * 37.06879 * 6 5 3 27 27 H 1.09002 * 110.36689 * 274.74376 * 6 5 3 28 28 H 1.08996 * 111.00417 * 278.93133 * 7 6 5 29 29 H 1.09004 * 111.00400 * 155.08538 * 7 6 5 30 30 H 0.96699 * 113.99841 * 63.84581 * 9 8 7 31 31 H 0.97004 * 120.00165 * 179.97438 * 13 12 10 32 32 H 1.08997 * 109.88276 * 61.60645 * 18 5 3 33 33 H 1.09003 * 109.88608 * 300.43956 * 18 5 3 34 34 H 1.09000 * 117.50165 * 0.02562 * 19 2 1 35 35 H 1.08998 * 117.49756 * 145.02808 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 8 2.6317 1.8159 -1.0290 5 7 2.2592 2.0686 1.1434 6 6 1.6597 1.6863 2.4348 7 6 2.5084 2.4245 3.5000 8 6 2.8018 3.7706 2.7864 9 8 1.7083 4.6765 2.9465 10 6 4.0781 4.3816 3.3046 11 1 4.9086 4.5473 2.6342 12 6 4.1859 4.7291 4.6345 13 7 3.1749 4.5269 5.4509 14 14 5.7683 5.4858 5.2769 15 1 6.6792 4.4088 5.7412 16 1 6.4255 6.2558 4.1905 17 1 5.4581 6.3945 6.4099 18 6 2.9572 3.3520 1.3092 19 6 2.2369 -1.1209 -0.7647 20 6 2.2365 -1.1207 0.7653 21 1 1.6113 -1.8583 1.2685 22 35 3.9227 -0.6768 1.6735 23 1 -0.3634 0.5893 -0.8418 24 1 -0.3633 -1.0237 -0.0895 25 1 -0.3633 0.4344 0.9314 26 1 1.7247 0.6078 2.5787 27 1 0.6214 2.0144 2.4830 28 1 3.4313 1.8832 3.7080 29 1 1.9361 2.5834 4.4140 30 1 1.5455 4.9384 3.8630 31 1 3.2507 4.7710 6.3867 32 1 2.5080 4.1047 0.6614 33 1 4.0133 3.2337 1.0666 34 1 1.6120 -1.8584 -1.2683 35 1 3.1720 -0.8750 -1.2677 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911526482.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:27 Heat of formation + Delta-G solvation = -73.516842 kcal Electronic energy + Delta-G solvation = -19927.945193 eV Core-core repulsion = 16779.310819 eV Total energy + Delta-G solvation = -3148.634374 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 317.041 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.42952 -39.33994 -37.80250 -36.08868 -34.20427 -31.60025 -31.25904 -30.16821 -29.17703 -27.26324 -24.81749 -23.12171 -22.82586 -21.41691 -19.77546 -19.11537 -17.78657 -17.13552 -16.93056 -16.59632 -16.28290 -15.96335 -15.01680 -14.81891 -14.30080 -14.13562 -13.90878 -13.60150 -13.30873 -13.26728 -13.15634 -13.12998 -12.67782 -12.66295 -12.52640 -12.29988 -12.24015 -11.96105 -11.58193 -11.25911 -10.94346 -10.77126 -10.63515 -10.45947 -10.13201 -9.59604 -8.25014 -6.38837 0.62822 1.38952 1.42255 1.49814 1.51002 1.94045 2.35204 2.40112 3.00230 3.33830 3.40997 3.51672 3.83556 3.97876 4.03919 4.26162 4.40714 4.47693 4.57867 4.64790 4.72698 4.79452 4.85941 4.88795 4.93490 5.19133 5.22002 5.26815 5.48944 5.56004 5.76627 6.07712 6.58100 6.65409 7.08864 7.31064 7.40677 8.80829 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.020356 B = 0.005738 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.184527 B = 4878.780525 C = 5525.516384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.144 4.144 3 C 0.551 3.449 4 O -0.589 6.589 5 N -0.593 5.593 6 C 0.109 3.891 7 C -0.116 4.116 8 C 0.238 3.762 9 O -0.593 6.593 10 C -0.562 4.562 11 H 0.047 0.953 12 C 0.040 3.960 13 N -0.903 5.903 14 Si 0.954 3.046 15 H -0.276 1.276 16 H -0.278 1.278 17 H -0.276 1.276 18 C 0.133 3.867 19 C -0.110 4.110 20 C -0.108 4.108 21 H 0.184 0.816 22 Br -0.135 7.135 23 H 0.064 0.936 24 H 0.109 0.891 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.380 0.620 31 H 0.272 0.728 32 H 0.041 0.959 33 H 0.054 0.946 34 H 0.160 0.840 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.755 -15.927 -5.091 17.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.148 4.148 3 C 0.340 3.660 4 O -0.470 6.470 5 N -0.324 5.324 6 C -0.013 4.013 7 C -0.155 4.155 8 C 0.198 3.802 9 O -0.401 6.401 10 C -0.600 4.600 11 H 0.066 0.934 12 C -0.162 4.162 13 N -0.542 5.542 14 Si 0.780 3.220 15 H -0.201 1.201 16 H -0.203 1.203 17 H -0.201 1.201 18 C 0.009 3.991 19 C -0.148 4.148 20 C -0.203 4.203 21 H 0.201 0.799 22 Br -0.053 7.053 23 H 0.083 0.917 24 H 0.128 0.872 25 H 0.087 0.913 26 H 0.109 0.891 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.230 0.770 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.178 0.822 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.032 -15.623 -5.820 17.415 hybrid contribution 0.907 0.960 0.936 1.619 sum -4.125 -14.663 -4.884 15.996 Atomic orbital electron populations 1.21374 0.86561 1.05266 1.03081 1.21775 0.98470 0.87107 1.07441 1.19767 0.78614 0.86178 0.81440 1.90637 1.51248 1.72236 1.32929 1.48462 1.51997 1.21569 1.10331 1.22495 0.96776 1.00335 0.81672 1.22973 0.98698 0.96531 0.97308 1.19532 0.85100 0.86974 0.88561 1.86104 1.53532 1.66963 1.33548 1.21690 0.99896 1.43345 0.95051 0.93446 1.25528 0.99458 0.94674 0.96499 1.69740 1.31646 1.47346 1.05468 0.85621 0.80019 0.78494 0.77862 1.20136 1.20311 1.20081 1.21732 0.95334 0.84365 0.97620 1.23574 1.02607 0.97911 0.90714 1.26105 0.93453 1.03476 0.97296 0.79926 1.97503 1.33266 1.94680 1.79885 0.91713 0.87210 0.91287 0.89105 0.91266 0.92700 0.90521 0.76986 0.91857 0.94054 0.92765 0.82210 0.88984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 9.71 71.98 0.70 -1.13 16 2 C -0.14 -3.48 1.64 -52.93 -0.09 -3.57 16 3 C 0.55 20.30 6.00 87.66 0.53 20.83 16 4 O -0.59 -26.38 17.31 -3.04 -0.05 -26.43 16 5 N -0.59 -23.33 2.93 -811.79 -2.38 -25.71 16 6 C 0.11 3.83 5.83 86.86 0.51 4.34 16 7 C -0.12 -5.02 5.47 31.99 0.17 -4.84 16 8 C 0.24 11.71 0.85 -10.35 -0.01 11.70 16 9 O -0.59 -30.09 13.09 -148.98 -1.95 -32.04 16 10 C -0.56 -30.20 8.21 25.60 0.21 -29.99 16 11 H 0.05 2.62 7.57 -2.91 -0.02 2.60 16 12 C 0.04 2.07 5.26 84.66 0.45 2.52 16 13 N -0.90 -46.04 10.65 21.45 0.23 -45.81 16 14 Si 0.95 41.91 29.54 68.60 2.03 43.93 16 15 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 17 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 18 C 0.13 6.25 6.23 86.73 0.54 6.79 16 19 C -0.11 -2.09 9.65 30.59 0.30 -1.79 16 20 C -0.11 -2.16 5.70 30.59 0.17 -1.98 16 21 H 0.18 2.26 8.14 -2.38 -0.02 2.24 16 22 Br -0.13 -3.91 31.10 -20.37 -0.63 -4.54 16 23 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.11 1.03 8.09 -2.39 -0.02 1.01 16 25 H 0.07 1.24 7.76 -2.39 -0.02 1.22 16 26 H 0.09 2.68 5.52 -2.39 -0.01 2.67 16 27 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.05 2.49 8.04 -2.39 -0.02 2.48 16 29 H 0.08 3.43 7.54 -2.38 -0.02 3.41 16 30 H 0.38 19.25 7.42 -74.06 -0.55 18.70 16 31 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 32 H 0.04 2.05 8.07 -2.39 -0.02 2.03 16 33 H 0.05 2.69 7.66 -2.39 -0.02 2.68 16 34 H 0.16 1.63 8.14 -2.39 -0.02 1.62 16 35 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -64.10 307.18 1.27 -62.83 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.56 Total: 24.90 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 3.48 Total: 2.86 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: -2.15 Total: -71.52 kcal Atomic # 8 Polarization: -56.46 SS G_CDS: -2.00 Total: -58.47 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 35 Polarization: -3.91 SS G_CDS: -0.63 Total: -4.54 kcal Total: -64.10 1.27 -62.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911526482.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.687 kcal (2) G-P(sol) polarization free energy of solvation -64.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds