Wall clock time and date at job start Tue Mar 31 2020 11:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47581 * 2 1 4 4 C 1.46495 * 119.99939 * 274.97316 * 3 2 1 5 5 C 1.50703 * 109.47052 * 269.99297 * 4 3 2 6 6 H 1.07998 * 119.99449 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99987 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00456 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99885 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47244 * 90.00034 * 9 7 5 11 11 H 1.48500 * 109.47317 * 210.00149 * 9 7 5 12 12 H 1.48499 * 109.46935 * 329.99811 * 9 7 5 13 13 C 1.34775 * 119.99969 * 94.96184 * 3 2 1 14 14 O 1.21586 * 120.00031 * 185.56629 * 13 3 2 15 15 C 1.47539 * 119.99900 * 5.56726 * 13 3 2 16 16 C 1.39734 * 120.18162 * 55.02832 * 15 13 3 17 17 C 1.37878 * 119.91790 * 180.02562 * 16 15 13 18 18 Cl 1.73601 * 119.85971 * 179.97438 * 17 16 15 19 19 C 1.38639 * 120.28363 * 0.02562 * 17 16 15 20 20 C 1.38135 * 120.36383 * 359.67572 * 19 17 16 21 21 Cl 1.73605 * 119.96147 * 180.31950 * 20 19 17 22 22 C 1.38806 * 120.07658 * 0.60166 * 20 19 17 23 23 O 1.35708 * 120.14336 * 179.69820 * 22 20 19 24 24 H 1.09003 * 109.46968 * 59.99727 * 1 2 3 25 25 H 1.08998 * 109.46991 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47008 * 300.00275 * 1 2 3 27 27 H 1.09004 * 109.47433 * 240.00107 * 2 1 3 28 28 H 1.09001 * 109.47386 * 119.99948 * 2 1 3 29 29 H 1.08999 * 109.47344 * 29.99249 * 4 3 2 30 30 H 1.09007 * 109.47504 * 149.99609 * 4 3 2 31 31 H 0.96996 * 120.00353 * 179.97438 * 8 7 5 32 32 H 1.08009 * 120.04093 * 359.97438 * 16 15 13 33 33 H 1.08001 * 119.81817 * 179.97438 * 19 17 16 34 34 H 0.96705 * 113.99619 * 269.72681 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1590 2.1084 -1.2639 5 6 3.5417 1.8860 -1.8204 6 1 4.2452 1.2647 -1.2861 7 6 3.9085 2.4756 -3.0114 8 7 3.0517 3.2318 -3.6622 9 14 5.6223 2.1993 -3.7016 10 1 5.6144 1.0038 -4.5824 11 1 6.0378 3.3896 -4.4863 12 1 6.5771 1.9850 -2.5846 13 6 2.3383 1.9828 1.1628 14 8 2.6465 3.1589 1.1741 15 6 2.3144 1.2143 2.4220 16 6 3.0560 0.0359 2.5399 17 6 3.0293 -0.6783 3.7190 18 17 3.9507 -2.1426 3.8636 19 6 2.2690 -0.2327 4.7893 20 6 1.5364 0.9339 4.6876 21 17 0.5945 1.4866 6.0371 22 6 1.5477 1.6617 3.5057 23 8 0.8236 2.8047 3.4023 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.4180 1.7456 -1.9762 30 1 2.0045 3.1733 -1.0896 31 1 3.3100 3.6469 -4.5000 32 1 3.6487 -0.3155 1.7082 33 1 2.2533 -0.7983 5.7092 34 1 -0.0768 2.6717 3.0755 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930466371.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:53 Heat of formation + Delta-G solvation = -82.142819 kcal Electronic energy + Delta-G solvation = -22131.520622 eV Core-core repulsion = 18501.815954 eV Total energy + Delta-G solvation = -3629.704669 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.79554 -39.93494 -38.42878 -37.68926 -37.16564 -36.95601 -34.92552 -32.59899 -31.62428 -30.86169 -29.10522 -25.93123 -24.83827 -23.84197 -23.66709 -20.82415 -19.50339 -18.73147 -18.42327 -17.81302 -17.54082 -17.06897 -16.43820 -16.29358 -15.81835 -15.60971 -14.81260 -14.76926 -14.55365 -14.30097 -13.90855 -13.85635 -13.57390 -13.34567 -13.25920 -13.13507 -12.71491 -12.55328 -12.38962 -12.21996 -12.14052 -12.11456 -11.91536 -11.82549 -11.73075 -10.84826 -10.64302 -10.15855 -9.73990 -9.51562 -8.23117 -6.37875 -0.47315 -0.35403 0.63400 1.05817 1.37377 1.40357 1.50072 1.62585 2.07450 2.19870 2.41017 2.82014 3.07189 3.30806 3.68437 3.78884 4.02894 4.06118 4.14493 4.36471 4.49194 4.56514 4.72948 4.77656 4.88925 4.93136 5.02571 5.07845 5.21127 5.33355 5.53960 5.80010 6.03831 6.49369 6.61249 6.71416 7.20180 7.36510 8.84283 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.015266 B = 0.004270 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.661520 B = 6556.321238 C = 7441.984739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.090 3.910 3 N -0.589 5.589 4 C 0.262 3.738 5 C -0.545 4.545 6 H 0.056 0.944 7 C 0.011 3.989 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.550 3.450 14 O -0.576 6.576 15 C -0.132 4.132 16 C -0.061 4.061 17 C -0.032 4.032 18 Cl -0.035 7.035 19 C -0.057 4.057 20 C -0.056 4.056 21 Cl -0.030 7.030 22 C 0.161 3.839 23 O -0.487 6.487 24 H 0.043 0.957 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.028 0.972 30 H 0.000 1.000 31 H 0.267 0.733 32 H 0.150 0.850 33 H 0.182 0.818 34 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.737 -13.922 17.929 23.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.032 4.032 3 N -0.319 5.319 4 C 0.141 3.859 5 C -0.584 4.584 6 H 0.074 0.926 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.790 3.210 10 H -0.187 1.187 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.338 3.662 14 O -0.456 6.456 15 C -0.137 4.137 16 C -0.081 4.081 17 C -0.060 4.060 18 Cl -0.006 7.006 19 C -0.076 4.076 20 C -0.084 4.084 21 Cl 0.000 7.000 22 C 0.114 3.886 23 O -0.300 6.300 24 H 0.062 0.938 25 H 0.115 0.885 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.046 0.954 30 H 0.018 0.982 31 H 0.076 0.924 32 H 0.168 0.832 33 H 0.199 0.801 34 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -5.137 -13.027 18.069 22.860 hybrid contribution 0.358 0.296 -0.972 1.078 sum -4.778 -12.731 17.096 21.845 Atomic orbital electron populations 1.22111 0.94380 1.03593 1.01623 1.21976 0.95740 0.81392 1.04103 1.48194 1.62369 1.15155 1.06217 1.18783 0.96094 0.91194 0.79787 1.21699 0.99332 1.30886 1.06473 0.92558 1.25820 1.01636 0.94360 0.97042 1.70043 1.37079 1.32680 1.16832 0.85442 0.79079 0.78154 0.78323 1.18700 1.20806 1.19696 1.18330 0.77720 0.86245 0.83928 1.90778 1.49831 1.17957 1.87030 1.20093 1.02873 0.96567 0.94129 1.21182 0.97231 0.91590 0.98058 1.20483 0.99077 0.91844 0.94558 1.98407 1.71676 1.32608 1.97917 1.21191 0.93049 0.93817 0.99576 1.20998 1.00990 0.96348 0.90088 1.98395 1.70398 1.89301 1.41951 1.18200 0.94246 0.85838 0.90356 1.84820 1.30327 1.26802 1.88025 0.93770 0.88537 0.92662 0.90250 0.88428 0.95397 0.98211 0.92375 0.83186 0.80117 0.72890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 10.24 71.98 0.74 -3.16 16 2 C 0.09 2.70 5.95 86.38 0.51 3.21 16 3 N -0.59 -24.64 2.46 -829.91 -2.04 -26.68 16 4 C 0.26 13.95 5.23 85.64 0.45 14.39 16 5 C -0.55 -30.91 9.39 25.60 0.24 -30.67 16 6 H 0.06 3.13 7.81 -2.91 -0.02 3.10 16 7 C 0.01 0.61 5.46 84.65 0.46 1.07 16 8 N -0.93 -55.54 13.29 21.44 0.28 -55.26 16 9 Si 0.97 44.36 29.54 68.60 2.03 46.39 16 10 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 13 C 0.55 23.47 6.78 86.70 0.59 24.06 16 14 O -0.58 -31.02 16.35 -1.85 -0.03 -31.05 16 15 C -0.13 -4.14 4.91 -20.01 -0.10 -4.24 16 16 C -0.06 -1.55 7.25 22.55 0.16 -1.39 16 17 C -0.03 -0.63 6.31 22.28 0.14 -0.49 16 18 Cl -0.04 -0.60 28.94 -2.72 -0.08 -0.67 16 19 C -0.06 -0.98 9.59 22.34 0.21 -0.76 16 20 C -0.06 -1.19 6.33 22.38 0.14 -1.04 16 21 Cl -0.03 -0.55 28.50 -2.72 -0.08 -0.62 16 22 C 0.16 4.40 6.70 22.85 0.15 4.55 16 23 O -0.49 -13.94 12.18 -88.15 -1.07 -15.01 16 24 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.08 2.47 8.11 -2.38 -0.02 2.45 16 28 H 0.10 2.40 4.42 -2.39 -0.01 2.39 16 29 H 0.03 1.50 8.07 -2.39 -0.02 1.48 16 30 H 0.00 -0.01 7.35 -2.38 -0.02 -0.03 16 31 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 32 H 0.15 3.82 7.58 -2.91 -0.02 3.80 16 33 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.41 8.07 9.06 -74.05 -0.67 7.40 16 Total: -1.00 -73.86 329.89 3.20 -70.66 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 0.49 Total: 6.71 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 3.70 Total: 5.54 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -1.75 Total: -81.94 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -1.10 Total: -46.06 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.16 Total: -1.30 kcal Total: -73.86 3.20 -70.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930466371.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.485 kcal (2) G-P(sol) polarization free energy of solvation -73.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds