Wall clock time and date at job start Tue Mar 31 2020 11:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47121 * 2 1 4 4 C 1.50696 * 109.47278 * 239.99507 * 2 1 3 5 5 H 1.08006 * 120.00042 * 239.99960 * 4 2 1 6 6 C 1.37875 * 119.99941 * 60.00083 * 4 2 1 7 7 N 1.31511 * 120.00279 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99927 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47046 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47343 * 119.99793 * 8 6 4 11 11 H 1.48496 * 109.46987 * 239.99675 * 8 6 4 12 12 N 1.46501 * 109.47350 * 119.99301 * 2 1 3 13 13 C 1.46505 * 119.99866 * 60.00147 * 12 2 1 14 14 C 1.34781 * 120.00227 * 240.00296 * 12 2 1 15 15 O 1.21587 * 119.99876 * 4.82409 * 14 12 2 16 16 C 1.47541 * 120.00055 * 184.81976 * 14 12 2 17 17 C 1.39734 * 120.17884 * 314.25958 * 16 14 12 18 18 C 1.37879 * 119.91236 * 179.97438 * 17 16 14 19 19 Cl 1.73603 * 119.85432 * 179.97438 * 18 17 16 20 20 C 1.38639 * 120.28711 * 0.02676 * 18 17 16 21 21 C 1.38139 * 120.36573 * 359.97153 * 20 18 17 22 22 Cl 1.73596 * 119.96148 * 179.97438 * 21 20 18 23 23 C 1.38814 * 120.07321 * 359.74894 * 21 20 18 24 24 O 1.35692 * 120.13958 * 180.24808 * 23 21 20 25 25 H 1.09005 * 109.47298 * 300.00437 * 1 2 3 26 26 H 1.08998 * 109.47563 * 60.00698 * 1 2 3 27 27 H 1.09005 * 109.47056 * 180.02562 * 1 2 3 28 28 H 0.97000 * 120.00436 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.47000 * 275.23801 * 13 12 2 30 30 H 1.09005 * 109.46785 * 155.24276 * 13 12 2 31 31 H 1.08998 * 109.46902 * 35.24101 * 13 12 2 32 32 H 1.08000 * 120.04355 * 359.95496 * 17 16 14 33 33 H 1.07997 * 119.82093 * 179.97438 * 20 18 17 34 34 H 0.96693 * 114.00407 * 270.27910 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9428 0.8294 -2.6035 8 14 2.3214 -1.1207 -4.0078 9 1 3.1465 -2.2873 -3.6035 10 1 1.1661 -1.5871 -4.8159 11 1 3.1466 -0.1877 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4282 14 6 2.7932 -0.0353 2.0834 15 8 3.0148 1.1512 1.9372 16 6 3.3725 -0.7580 3.2319 17 6 2.5797 -1.6247 3.9888 18 6 3.1268 -2.2977 5.0606 19 17 2.1403 -3.3736 6.0003 20 6 4.4610 -2.1180 5.3918 21 6 5.2554 -1.2640 4.6516 22 17 6.9245 -1.0464 5.0760 23 6 4.7216 -0.5834 3.5659 24 8 5.5020 0.2519 2.8348 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7081 1.1606 -3.4845 29 1 0.6919 -2.1462 1.9175 30 1 2.4175 -2.5572 2.0652 31 1 1.6207 -2.6192 0.4746 32 1 1.5397 -1.7671 3.7347 33 1 4.8817 -2.6486 6.2331 34 1 5.5096 1.1642 3.1552 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931941272.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:18 Heat of formation + Delta-G solvation = -75.483201 kcal Electronic energy + Delta-G solvation = -22117.290397 eV Core-core repulsion = 18487.874512 eV Total energy + Delta-G solvation = -3629.415886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.79109 -39.95684 -38.42087 -37.69571 -37.18037 -37.05339 -34.90354 -32.80129 -30.95167 -30.73387 -27.81146 -27.31615 -25.49005 -23.96732 -22.87235 -20.71690 -19.49732 -18.74350 -18.30373 -17.87098 -17.33322 -16.97649 -16.68283 -16.01687 -15.85764 -15.72135 -14.83859 -14.72629 -14.37948 -14.15055 -13.88729 -13.65912 -13.52394 -13.36359 -13.05796 -12.91630 -12.72360 -12.67191 -12.37839 -12.22137 -12.14780 -12.08405 -11.97715 -11.89061 -11.21098 -10.86885 -10.53332 -10.15030 -9.73774 -9.41225 -8.16131 -6.32208 -0.50004 -0.33291 0.64227 1.07612 1.40319 1.42601 1.53164 1.61019 2.03369 2.34688 2.44499 2.87873 3.12447 3.30508 3.68764 3.80064 4.02983 4.13697 4.33416 4.49677 4.63389 4.71741 4.74066 4.81129 4.89751 4.96766 5.04121 5.09047 5.46086 5.53407 5.64536 6.00537 6.13966 6.49368 6.67977 6.74157 7.18844 7.40578 8.88566 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.015596 B = 0.004107 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.951064 B = 6816.396123 C = 7734.592600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.263 3.737 3 H 0.013 0.987 4 C -0.539 4.539 5 H 0.059 0.941 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.963 3.037 9 H -0.267 1.267 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.588 5.588 13 C 0.071 3.929 14 C 0.548 3.452 15 O -0.584 6.584 16 C -0.140 4.140 17 C -0.055 4.055 18 C -0.037 4.037 19 Cl -0.033 7.033 20 C -0.056 4.056 21 C -0.062 4.062 22 Cl -0.032 7.032 23 C 0.162 3.838 24 O -0.491 6.491 25 H 0.023 0.977 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.265 0.735 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.162 0.838 33 H 0.180 0.820 34 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.941 -9.674 18.963 21.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.162 3.838 3 H 0.031 0.969 4 C -0.577 4.577 5 H 0.077 0.923 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.788 3.212 9 H -0.192 1.192 10 H -0.198 1.198 11 H -0.211 1.211 12 N -0.317 5.317 13 C -0.071 4.071 14 C 0.337 3.663 15 O -0.466 6.466 16 C -0.145 4.145 17 C -0.075 4.075 18 C -0.064 4.064 19 Cl -0.004 7.004 20 C -0.075 4.075 21 C -0.090 4.090 22 Cl -0.003 7.003 23 C 0.115 3.885 24 O -0.304 6.304 25 H 0.042 0.958 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.180 0.820 33 H 0.198 0.802 34 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 5.118 -9.524 18.504 21.431 hybrid contribution 0.212 0.502 -0.886 1.040 sum 5.330 -9.022 17.618 20.499 Atomic orbital electron populations 1.21868 0.96664 1.00333 1.00182 1.18609 0.91944 0.92232 0.81041 0.96924 1.21560 1.31960 1.13104 0.91119 0.92317 1.25678 0.95011 0.95605 1.01856 1.70014 1.37144 1.23775 1.24432 0.85435 0.78256 0.78483 0.79010 1.19151 1.19791 1.21141 1.48153 1.48156 1.13301 1.22117 1.22141 1.01107 0.80751 1.03119 1.18370 0.78780 0.86476 0.82722 1.90704 1.62403 1.16886 1.76648 1.20139 0.93927 1.01792 0.98611 1.21444 1.01411 0.92296 0.92322 1.20508 0.92272 0.98038 0.95594 1.98406 1.68964 1.62055 1.70972 1.21213 0.90931 0.95699 0.99635 1.21029 0.88505 1.02802 0.96615 1.98392 1.13432 1.96264 1.92231 1.18297 0.87592 0.93392 0.89262 1.84692 1.66294 1.24346 1.55092 0.95838 0.91245 0.93250 0.92559 0.90462 0.89789 0.91030 0.82035 0.80223 0.72633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.25 8.97 71.98 0.65 -5.60 16 2 C 0.26 13.63 2.63 44.24 0.12 13.74 16 3 H 0.01 0.79 6.91 -2.38 -0.02 0.77 16 4 C -0.54 -29.29 8.03 25.60 0.21 -29.08 16 5 H 0.06 3.14 7.25 -2.91 -0.02 3.12 16 6 C 0.02 1.00 5.30 84.65 0.45 1.45 16 7 N -0.91 -52.29 11.32 21.45 0.24 -52.05 16 8 Si 0.96 43.09 29.54 68.60 2.03 45.11 16 9 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 12 N -0.59 -24.95 2.75 -830.54 -2.29 -27.23 16 13 C 0.07 2.24 8.05 127.77 1.03 3.27 16 14 C 0.55 22.97 7.02 86.70 0.61 23.58 16 15 O -0.58 -29.17 15.74 7.58 0.12 -29.05 16 16 C -0.14 -4.35 5.05 -20.02 -0.10 -4.45 16 17 C -0.06 -1.29 7.24 22.55 0.16 -1.13 16 18 C -0.04 -0.69 6.31 22.28 0.14 -0.55 16 19 Cl -0.03 -0.51 28.94 -2.72 -0.08 -0.59 16 20 C -0.06 -0.96 9.59 22.34 0.21 -0.75 16 21 C -0.06 -1.36 6.33 22.38 0.14 -1.21 16 22 Cl -0.03 -0.64 28.50 -2.72 -0.08 -0.72 16 23 C 0.16 4.64 6.68 22.86 0.15 4.80 16 24 O -0.49 -15.34 11.91 -78.54 -0.94 -16.28 16 25 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 27 H 0.05 2.10 7.67 -2.38 -0.02 2.08 16 28 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 29 H 0.08 2.00 7.59 -2.39 -0.02 1.98 16 30 H 0.08 2.23 5.34 -2.38 -0.01 2.22 16 31 H 0.07 2.44 6.96 -2.39 -0.02 2.42 16 32 H 0.16 3.40 6.28 -2.91 -0.02 3.38 16 33 H 0.18 2.02 8.06 -2.91 -0.02 1.99 16 34 H 0.41 10.36 9.06 -74.06 -0.67 9.69 16 Total: -1.00 -68.15 318.88 3.28 -64.87 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.50 Total: 11.86 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 3.77 Total: 4.07 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -2.04 Total: -79.28 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -0.82 Total: -45.33 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.16 Total: -1.31 kcal Total: -68.15 3.28 -64.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941272.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.612 kcal (2) G-P(sol) polarization free energy of solvation -68.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds