Wall clock time and date at job start Tue Mar 31 2020 11:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47179 * 2 1 4 4 C 1.50698 * 109.47317 * 119.99889 * 2 1 3 5 5 H 1.07998 * 120.00425 * 120.00181 * 4 2 1 6 6 C 1.37882 * 119.99820 * 300.00095 * 4 2 1 7 7 N 1.31513 * 120.00125 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99940 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46832 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46833 * 120.00051 * 8 6 4 11 11 H 1.48503 * 109.46867 * 239.99991 * 8 6 4 12 12 N 1.46504 * 109.47537 * 240.00074 * 2 1 3 13 13 C 1.46500 * 119.99279 * 300.00023 * 12 2 1 14 14 C 1.34773 * 120.00484 * 119.99619 * 12 2 1 15 15 O 1.21590 * 119.99601 * 4.46122 * 14 12 2 16 16 C 1.47537 * 119.99838 * 184.45572 * 14 12 2 17 17 C 1.39729 * 120.18372 * 310.71526 * 16 14 12 18 18 C 1.37884 * 119.91921 * 180.02562 * 17 16 14 19 19 Cl 1.73597 * 119.85962 * 179.97438 * 18 17 16 20 20 C 1.38641 * 120.28043 * 0.02562 * 18 17 16 21 21 C 1.38144 * 120.36726 * 359.73933 * 20 18 17 22 22 Cl 1.73595 * 119.96166 * 180.28441 * 21 20 18 23 23 C 1.38809 * 120.07340 * 0.50733 * 21 20 18 24 24 O 1.35695 * 120.14066 * 179.76636 * 23 21 20 25 25 H 1.09000 * 109.47257 * 300.00394 * 1 2 3 26 26 H 1.08996 * 109.47037 * 60.00337 * 1 2 3 27 27 H 1.08996 * 109.47179 * 179.97438 * 1 2 3 28 28 H 0.96991 * 120.00035 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47425 * 273.10437 * 13 12 2 30 30 H 1.08997 * 109.47811 * 33.10856 * 13 12 2 31 31 H 1.09011 * 109.46741 * 153.10745 * 13 12 2 32 32 H 1.08005 * 120.03941 * 0.02562 * 17 16 14 33 33 H 1.07999 * 119.81962 * 179.97438 * 20 18 17 34 34 H 0.96700 * 114.00308 * 269.72778 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1455 -2.2876 3.6038 10 1 3.1466 -0.1871 4.8165 11 1 1.1660 -1.5865 4.8161 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0356 -2.0834 15 8 3.1539 1.1022 -1.8518 16 6 3.2038 -0.6994 -3.3354 17 6 3.7519 -1.9843 -3.3023 18 6 4.1342 -2.5993 -4.4757 19 17 4.8155 -4.1954 -4.4327 20 6 3.9777 -1.9480 -5.6895 21 6 3.4327 -0.6795 -5.7363 22 17 3.2348 0.1234 -7.2627 23 6 3.0474 -0.0443 -4.5637 24 8 2.5163 1.2036 -4.6077 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7081 1.1609 3.4843 29 1 2.3853 -2.7378 -0.9249 30 1 0.6670 -2.2863 -1.0332 31 1 1.6778 -2.2992 -2.4983 32 1 3.8759 -2.4951 -2.3588 33 1 4.2801 -2.4365 -6.6040 34 1 3.1706 1.9123 -4.5384 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931941273.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:22 Heat of formation + Delta-G solvation = -57.716844 kcal Electronic energy + Delta-G solvation = -22094.599185 eV Core-core repulsion = 18465.953706 eV Total energy + Delta-G solvation = -3628.645479 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.56425 -38.55159 -37.43271 -36.77069 -36.16541 -35.39586 -33.05930 -31.45788 -29.83328 -29.13965 -26.36984 -25.27862 -24.24315 -22.92906 -21.29453 -19.21910 -18.36793 -17.29731 -16.81731 -16.38261 -15.85861 -15.82596 -15.19313 -14.77698 -14.44891 -14.25774 -13.71854 -13.27539 -13.04776 -12.77211 -12.63433 -12.48829 -12.24264 -11.71022 -11.60914 -11.49561 -11.22728 -11.12181 -11.01608 -10.89134 -10.84611 -10.75591 -10.29623 -10.21658 -9.34330 -9.24033 -9.05570 -8.77326 -8.47760 -7.71823 -6.11472 -4.19795 0.53783 0.63970 1.54389 1.98758 2.80432 3.23740 3.31930 3.34487 3.41303 3.70493 3.91196 4.35063 4.49433 4.65983 4.79293 5.07116 5.17782 5.21923 5.44812 5.60928 5.70525 5.80970 5.96391 6.05485 6.21863 6.71646 6.77732 6.99252 7.30951 7.42845 7.46151 7.65824 7.94831 8.11917 8.38390 8.71784 8.89134 9.46723 10.93939 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.017029 B = 0.004061 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.811176 B = 6893.334392 C = 8114.125302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.259 3.741 3 H 0.065 0.935 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.579 5.579 13 C 0.079 3.921 14 C 0.554 3.446 15 O -0.537 6.537 16 C -0.117 4.117 17 C -0.061 4.061 18 C -0.042 4.042 19 Cl -0.054 7.054 20 C -0.077 4.077 21 C -0.061 4.061 22 Cl -0.045 7.045 23 C 0.170 3.830 24 O -0.473 6.473 25 H 0.095 0.905 26 H 0.013 0.987 27 H 0.031 0.969 28 H 0.263 0.737 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.007 -7.171 -17.045 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.083 0.917 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.309 5.309 13 C -0.065 4.065 14 C 0.339 3.661 15 O -0.416 6.416 16 C -0.121 4.121 17 C -0.080 4.080 18 C -0.069 4.069 19 Cl -0.025 7.025 20 C -0.097 4.097 21 C -0.089 4.089 22 Cl -0.016 7.016 23 C 0.122 3.878 24 O -0.285 6.285 25 H 0.114 0.886 26 H 0.032 0.968 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.171 0.829 33 H 0.167 0.833 34 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 4.590 -6.799 -16.916 18.800 hybrid contribution 0.737 -0.437 0.758 1.144 sum 5.327 -7.236 -16.158 18.488 Atomic orbital electron populations 1.22105 0.97951 0.99531 1.01060 1.19031 0.91015 0.94526 0.79524 0.91674 1.21318 1.31967 1.13051 0.90142 0.92150 1.24888 0.94889 0.94951 0.98982 1.69881 1.36246 1.22595 1.23753 0.86431 0.78618 0.79588 0.82702 1.19784 1.20880 1.20907 1.48198 1.47877 1.11717 1.23125 1.21799 1.02102 0.83007 0.99600 1.17707 0.79939 0.86008 0.82400 1.90757 1.55641 1.18003 1.77151 1.20576 1.01979 0.95015 0.94555 1.21408 0.95224 0.92935 0.98451 1.20544 1.03382 0.88911 0.94059 1.98390 1.83379 1.21917 1.98806 1.20866 0.98312 0.92603 0.97906 1.21051 1.05122 0.95200 0.87539 1.98383 1.96073 1.79285 1.27826 1.18114 0.92972 0.87560 0.89104 1.84714 1.36221 1.12490 1.95092 0.88606 0.96798 0.94993 0.92665 0.92740 0.90592 0.92585 0.82929 0.83326 0.73631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.94 37.16 0.33 -3.16 16 2 C 0.26 6.47 2.63 -69.08 -0.18 6.29 16 3 H 0.07 1.89 6.91 -51.93 -0.36 1.53 16 4 C -0.53 -13.88 8.37 -34.44 -0.29 -14.17 16 5 H 0.06 1.56 7.56 -52.49 -0.40 1.17 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.64 11.32 55.43 0.63 -24.02 16 8 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.58 -12.12 2.75 -176.49 -0.49 -12.60 16 13 C 0.08 1.30 8.36 59.85 0.50 1.80 16 14 C 0.55 11.28 6.94 -12.47 -0.09 11.19 16 15 O -0.54 -12.72 15.88 -3.82 -0.06 -12.78 16 16 C -0.12 -1.83 4.90 -104.86 -0.51 -2.34 16 17 C -0.06 -0.80 7.38 -39.15 -0.29 -1.08 16 18 C -0.04 -0.47 6.31 -39.56 -0.25 -0.72 16 19 Cl -0.05 -0.53 28.94 -51.86 -1.50 -2.04 16 20 C -0.08 -0.80 9.59 -39.47 -0.38 -1.18 16 21 C -0.06 -0.72 6.33 -39.40 -0.25 -0.97 16 22 Cl -0.04 -0.47 28.50 -51.86 -1.48 -1.95 16 23 C 0.17 2.41 6.69 -38.68 -0.26 2.15 16 24 O -0.47 -6.86 12.01 -27.90 -0.34 -7.19 16 25 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 26 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.03 0.69 6.68 -51.93 -0.35 0.34 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.05 0.84 7.48 -51.93 -0.39 0.46 16 30 H 0.08 1.26 6.44 -51.93 -0.33 0.93 16 31 H 0.06 0.78 5.68 -51.92 -0.29 0.49 16 32 H 0.15 1.94 6.59 -52.48 -0.35 1.60 16 33 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.40 4.56 9.06 45.56 0.41 4.97 16 LS Contribution 318.97 15.07 4.81 4.81 Total: -1.00 -30.17 318.97 -7.55 -37.72 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -2.35 Total: 2.93 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.76 Total: -0.53 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.14 Total: -36.62 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.40 Total: -19.97 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -2.98 Total: -3.99 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.17 -7.55 -37.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941273.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.997 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds