Wall clock time and date at job start Tue Mar 31 2020 11:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47179 * 2 1 4 4 C 1.50698 * 109.47317 * 119.99889 * 2 1 3 5 5 H 1.07998 * 120.00425 * 120.00181 * 4 2 1 6 6 C 1.37882 * 119.99820 * 300.00095 * 4 2 1 7 7 N 1.31513 * 120.00125 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99940 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46832 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46833 * 120.00051 * 8 6 4 11 11 H 1.48503 * 109.46867 * 239.99991 * 8 6 4 12 12 N 1.46504 * 109.47537 * 240.00074 * 2 1 3 13 13 C 1.46500 * 119.99279 * 300.00023 * 12 2 1 14 14 C 1.34773 * 120.00484 * 119.99619 * 12 2 1 15 15 O 1.21590 * 119.99601 * 4.46122 * 14 12 2 16 16 C 1.47537 * 119.99838 * 184.45572 * 14 12 2 17 17 C 1.39729 * 120.18372 * 310.71526 * 16 14 12 18 18 C 1.37884 * 119.91921 * 180.02562 * 17 16 14 19 19 Cl 1.73597 * 119.85962 * 179.97438 * 18 17 16 20 20 C 1.38641 * 120.28043 * 0.02562 * 18 17 16 21 21 C 1.38144 * 120.36726 * 359.73933 * 20 18 17 22 22 Cl 1.73595 * 119.96166 * 180.28441 * 21 20 18 23 23 C 1.38809 * 120.07340 * 0.50733 * 21 20 18 24 24 O 1.35695 * 120.14066 * 179.76636 * 23 21 20 25 25 H 1.09000 * 109.47257 * 300.00394 * 1 2 3 26 26 H 1.08996 * 109.47037 * 60.00337 * 1 2 3 27 27 H 1.08996 * 109.47179 * 179.97438 * 1 2 3 28 28 H 0.96991 * 120.00035 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47425 * 273.10437 * 13 12 2 30 30 H 1.08997 * 109.47811 * 33.10856 * 13 12 2 31 31 H 1.09011 * 109.46741 * 153.10745 * 13 12 2 32 32 H 1.08005 * 120.03941 * 0.02562 * 17 16 14 33 33 H 1.07999 * 119.81962 * 179.97438 * 20 18 17 34 34 H 0.96700 * 114.00308 * 269.72778 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1455 -2.2876 3.6038 10 1 3.1466 -0.1871 4.8165 11 1 1.1660 -1.5865 4.8161 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0356 -2.0834 15 8 3.1539 1.1022 -1.8518 16 6 3.2038 -0.6994 -3.3354 17 6 3.7519 -1.9843 -3.3023 18 6 4.1342 -2.5993 -4.4757 19 17 4.8155 -4.1954 -4.4327 20 6 3.9777 -1.9480 -5.6895 21 6 3.4327 -0.6795 -5.7363 22 17 3.2348 0.1234 -7.2627 23 6 3.0474 -0.0443 -4.5637 24 8 2.5163 1.2036 -4.6077 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7081 1.1609 3.4843 29 1 2.3853 -2.7378 -0.9249 30 1 0.6670 -2.2863 -1.0332 31 1 1.6778 -2.2992 -2.4983 32 1 3.8759 -2.4951 -2.3588 33 1 4.2801 -2.4365 -6.6040 34 1 3.1706 1.9123 -4.5384 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931941273.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:21 Heat of formation + Delta-G solvation = -76.616835 kcal Electronic energy + Delta-G solvation = -22095.418750 eV Core-core repulsion = 18465.953706 eV Total energy + Delta-G solvation = -3629.465044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.77941 -39.96446 -38.41220 -37.69477 -37.17563 -37.06702 -34.88709 -32.78601 -30.96974 -30.73202 -27.81672 -27.30917 -25.51457 -23.95247 -22.87448 -20.70613 -19.48831 -18.73357 -18.35156 -17.82133 -17.30473 -16.99852 -16.70122 -16.05089 -15.85704 -15.72426 -14.85974 -14.65245 -14.48896 -14.19158 -13.87076 -13.64310 -13.45217 -13.37351 -13.09277 -12.96223 -12.72622 -12.63524 -12.37934 -12.21323 -12.13282 -12.10309 -11.99471 -11.89584 -11.18517 -10.88219 -10.53160 -10.15425 -9.74185 -9.42181 -8.14725 -6.31203 -0.49523 -0.33557 0.64113 1.07344 1.42137 1.43907 1.54811 1.61049 2.05905 2.27054 2.46665 2.87105 3.13838 3.30414 3.69340 3.79763 4.03570 4.12933 4.33039 4.49466 4.61886 4.70570 4.75145 4.79330 4.86946 4.96412 5.02773 5.08476 5.43776 5.55505 5.64523 5.98785 6.13641 6.47727 6.67703 6.75480 7.18734 7.41538 8.90123 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.017029 B = 0.004061 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.811176 B = 6893.334392 C = 8114.125302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.263 3.737 3 H 0.013 0.987 4 C -0.537 4.537 5 H 0.063 0.937 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.965 3.035 9 H -0.263 1.263 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.588 5.588 13 C 0.077 3.923 14 C 0.549 3.451 15 O -0.585 6.585 16 C -0.138 4.138 17 C -0.057 4.057 18 C -0.036 4.036 19 Cl -0.035 7.035 20 C -0.056 4.056 21 C -0.060 4.060 22 Cl -0.031 7.031 23 C 0.163 3.837 24 O -0.490 6.490 25 H 0.070 0.930 26 H 0.018 0.982 27 H 0.049 0.951 28 H 0.265 0.735 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.155 0.845 33 H 0.181 0.819 34 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.827 -9.833 -18.590 21.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.161 3.839 3 H 0.031 0.969 4 C -0.575 4.575 5 H 0.082 0.918 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.790 3.210 9 H -0.187 1.187 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.317 5.317 13 C -0.065 4.065 14 C 0.337 3.663 15 O -0.466 6.466 16 C -0.142 4.142 17 C -0.076 4.076 18 C -0.063 4.063 19 Cl -0.006 7.006 20 C -0.075 4.075 21 C -0.087 4.087 22 Cl -0.002 7.002 23 C 0.115 3.885 24 O -0.303 6.303 25 H 0.089 0.911 26 H 0.037 0.963 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.173 0.827 33 H 0.198 0.802 34 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 5.411 -9.500 -18.489 21.480 hybrid contribution 0.525 0.387 1.122 1.298 sum 5.937 -9.113 -17.367 20.492 Atomic orbital electron populations 1.21896 0.97053 1.00258 1.00036 1.18613 0.91639 0.92340 0.81259 0.96886 1.21571 1.31976 1.13104 0.90887 0.91849 1.25721 0.95026 0.95597 1.01986 1.70021 1.37249 1.23912 1.24416 0.85405 0.78200 0.78527 0.78871 1.18738 1.21212 1.20091 1.48156 1.48048 1.13349 1.22190 1.22009 1.02250 0.80528 1.01710 1.18373 0.78884 0.85561 0.83499 1.90714 1.57299 1.20259 1.78372 1.20106 1.05073 0.96373 0.92647 1.21364 0.94843 0.91916 0.99468 1.20504 1.02690 0.89564 0.93528 1.98407 1.82976 1.20438 1.98765 1.21207 0.95914 0.91566 0.98791 1.21003 1.04825 0.95586 0.87316 1.98393 1.95998 1.79226 1.26540 1.18230 0.93301 0.87405 0.89519 1.84670 1.37298 1.13223 1.95144 0.91083 0.96286 0.93231 0.92616 0.91528 0.90703 0.89733 0.82715 0.80193 0.72554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.48 8.94 71.98 0.64 -5.83 16 2 C 0.26 13.64 2.63 44.24 0.12 13.75 16 3 H 0.01 0.81 6.91 -2.39 -0.02 0.80 16 4 C -0.54 -28.76 8.37 25.60 0.21 -28.54 16 5 H 0.06 3.27 7.56 -2.91 -0.02 3.25 16 6 C 0.02 0.89 5.30 84.66 0.45 1.33 16 7 N -0.92 -52.38 11.32 21.45 0.24 -52.13 16 8 Si 0.96 42.47 29.54 68.60 2.03 44.49 16 9 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 10 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 12 N -0.59 -25.02 2.75 -830.55 -2.29 -27.31 16 13 C 0.08 2.46 8.36 127.77 1.07 3.53 16 14 C 0.55 22.99 6.94 86.70 0.60 23.59 16 15 O -0.58 -29.28 15.88 4.71 0.07 -29.21 16 16 C -0.14 -4.25 4.90 -20.02 -0.10 -4.34 16 17 C -0.06 -1.37 7.38 22.55 0.17 -1.20 16 18 C -0.04 -0.68 6.31 22.28 0.14 -0.54 16 19 Cl -0.03 -0.57 28.94 -2.72 -0.08 -0.65 16 20 C -0.06 -0.95 9.59 22.34 0.21 -0.73 16 21 C -0.06 -1.26 6.33 22.38 0.14 -1.12 16 22 Cl -0.03 -0.58 28.50 -2.72 -0.08 -0.66 16 23 C 0.16 4.49 6.69 22.86 0.15 4.64 16 24 O -0.49 -14.33 12.01 -81.44 -0.98 -15.31 16 25 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 26 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 2.16 6.68 -2.39 -0.02 2.14 16 28 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.07 1.95 7.48 -2.39 -0.02 1.94 16 30 H 0.07 2.39 6.44 -2.39 -0.02 2.37 16 31 H 0.08 2.20 5.68 -2.38 -0.01 2.19 16 32 H 0.16 3.64 6.59 -2.91 -0.02 3.62 16 33 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.41 9.71 9.06 -74.06 -0.67 9.04 16 Total: -1.00 -67.36 318.97 3.24 -64.12 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.50 Total: 12.12 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 3.81 Total: 4.53 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -2.04 Total: -79.44 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -0.90 Total: -44.52 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.16 Total: -1.31 kcal Total: -67.36 3.24 -64.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941273.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.496 kcal (2) G-P(sol) polarization free energy of solvation -67.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds