Wall clock time and date at job start Tue Mar 31 2020 11:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99853 * 2 1 4 4 H 1.48500 * 109.47239 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47085 * 300.00194 * 3 2 1 6 6 H 1.48509 * 109.46867 * 59.99896 * 3 2 1 7 7 C 1.37877 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99477 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00172 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46942 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.46898 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99687 * 179.97438 * 12 11 10 14 14 O 1.21588 * 120.00216 * 0.02562 * 13 12 11 15 15 C 1.47532 * 119.99691 * 180.02562 * 13 12 11 16 16 C 1.39738 * 120.18355 * 359.97438 * 15 13 12 17 17 C 1.37879 * 119.92003 * 180.02562 * 16 15 13 18 18 Cl 1.73595 * 119.86063 * 180.02562 * 17 16 15 19 19 C 1.38651 * 120.28131 * 0.02991 * 17 16 15 20 20 C 1.38138 * 120.36258 * 359.66883 * 19 17 16 21 21 Cl 1.73601 * 119.95936 * 180.32287 * 20 19 17 22 22 C 1.38806 * 120.07601 * 0.60703 * 20 19 17 23 23 O 1.35699 * 120.13931 * 179.69291 * 22 20 19 24 24 H 0.96995 * 119.99834 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46740 * 60.00191 * 9 7 2 26 26 H 1.08998 * 109.46948 * 299.99856 * 9 7 2 27 27 H 1.09004 * 109.47419 * 59.99961 * 10 9 7 28 28 H 1.09007 * 109.47202 * 300.00006 * 10 9 7 29 29 H 1.08992 * 109.47114 * 59.99939 * 11 10 9 30 30 H 1.08998 * 109.46726 * 299.99629 * 11 10 9 31 31 H 0.97002 * 120.00083 * 359.97438 * 12 11 10 32 32 H 1.07995 * 120.03766 * 0.02562 * 16 15 13 33 33 H 1.08001 * 119.81534 * 179.97438 * 19 17 16 34 34 H 0.96700 * 114.00288 * 269.72717 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4804 -4.9871 0.0012 12 7 2.4325 -6.1006 0.0018 13 6 1.9832 -7.3713 0.0019 14 8 0.7878 -7.5935 0.0010 15 6 2.9420 -8.4926 0.0031 16 6 4.3167 -8.2416 0.0036 17 6 5.2079 -9.2936 0.0042 18 17 6.9153 -8.9800 0.0054 19 6 4.7462 -10.6010 0.0036 20 6 3.3898 -10.8625 0.0094 21 17 2.8233 -12.5035 0.0172 22 6 2.4793 -9.8148 0.0031 23 8 1.1466 -10.0703 0.0025 24 1 -0.4850 0.8400 0.0004 25 1 0.6249 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8903 27 1 2.8714 -3.6039 0.8923 28 1 2.8728 -3.6046 -0.8877 29 1 0.8548 -5.0450 -0.8894 30 1 0.8528 -5.0446 0.8905 31 1 3.3862 -5.9233 0.0021 32 1 4.6805 -7.2248 0.0035 33 1 5.4509 -11.4194 0.0037 34 1 0.7607 -10.1445 -0.8811 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931970308.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:09 Heat of formation + Delta-G solvation = -80.117479 kcal Electronic energy + Delta-G solvation = -20669.845880 eV Core-core repulsion = 17040.229037 eV Total energy + Delta-G solvation = -3629.616843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 4.17 seconds Orbital eigenvalues (eV) -40.86466 -38.92527 -37.68383 -37.00569 -36.43217 -35.46738 -33.45537 -32.10846 -30.84826 -30.08689 -26.93479 -24.68314 -23.39324 -22.68544 -20.90324 -20.37668 -18.98260 -17.99902 -17.08917 -16.43504 -16.20918 -15.88462 -15.42493 -15.30662 -15.04872 -14.47583 -14.15083 -13.78255 -13.72752 -13.20260 -13.05343 -12.70300 -12.32766 -11.88233 -11.83682 -11.71943 -11.50556 -11.36219 -11.19252 -10.94970 -10.78694 -10.60687 -10.03570 -9.92699 -9.57312 -9.45960 -9.14695 -9.08149 -8.88747 -8.40568 -6.04970 -4.08183 0.10206 0.33261 1.29252 1.74055 2.34852 3.09353 3.23023 3.28008 3.35784 3.39068 3.58450 4.13827 4.33800 4.41926 4.47114 4.66762 4.88053 5.13294 5.31083 5.34910 5.44506 5.61764 5.70034 5.74000 6.08508 6.32871 6.52632 6.73381 6.93556 7.22466 7.50901 7.59843 7.71515 7.93500 8.17174 8.34487 8.98681 9.56370 11.06352 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.019409 B = 0.002516 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.293151 B =11124.269619 C =12538.196114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.117 3.883 12 N -0.719 5.719 13 C 0.553 3.447 14 O -0.516 6.516 15 C -0.135 4.135 16 C -0.059 4.059 17 C -0.044 4.044 18 Cl -0.048 7.048 19 C -0.067 4.067 20 C -0.066 4.066 21 Cl -0.038 7.038 22 C 0.185 3.815 23 O -0.461 6.461 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.020 0.980 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.397 0.603 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.636 -24.846 -1.702 27.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.160 4.160 11 C -0.005 4.005 12 N -0.370 5.370 13 C 0.338 3.662 14 O -0.393 6.393 15 C -0.140 4.140 16 C -0.078 4.078 17 C -0.071 4.071 18 Cl -0.019 7.019 19 C -0.086 4.086 20 C -0.093 4.093 21 Cl -0.009 7.009 22 C 0.136 3.864 23 O -0.272 6.272 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.232 0.768 32 H 0.167 0.833 33 H 0.170 0.830 34 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 10.735 -24.964 -1.105 27.197 hybrid contribution 1.014 0.921 -0.456 1.444 sum 11.749 -24.044 -1.561 26.806 Atomic orbital electron populations 1.69972 1.06066 1.26630 1.50574 1.25033 0.94857 0.99337 0.95247 0.86529 0.80044 0.83745 0.77629 1.19749 1.20984 1.20982 1.21229 0.93026 0.90897 1.50914 0.92578 1.19033 0.93828 0.90813 0.97725 1.21911 0.99844 0.93233 1.00986 1.21727 0.91731 0.84728 1.02352 1.46158 1.10994 1.05641 1.74217 1.17753 0.87828 0.82558 0.78041 1.90842 1.15378 1.84405 1.48651 1.20420 0.93437 0.93781 1.06316 1.21299 0.90923 0.99703 0.95891 1.20561 0.86322 0.93622 1.06562 1.98412 1.10736 1.95834 1.96875 1.20984 0.93786 0.96259 0.97610 1.21137 0.93175 0.86978 1.08059 1.98402 1.89293 1.16452 1.96786 1.18184 0.84695 0.88983 0.94527 1.84785 1.16123 1.92611 1.33697 0.92944 0.96220 0.96209 0.92611 0.92633 0.91401 0.91372 0.76822 0.83286 0.83025 0.73861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 11 C 0.12 1.94 5.67 -4.04 -0.02 1.92 16 12 N -0.72 -9.63 5.51 -61.35 -0.34 -9.97 16 13 C 0.55 7.80 7.76 -12.47 -0.10 7.71 16 14 O -0.52 -9.06 15.16 -16.61 -0.25 -9.31 16 15 C -0.14 -1.49 5.88 -104.86 -0.62 -2.10 16 16 C -0.06 -0.51 9.31 -39.15 -0.36 -0.87 16 17 C -0.04 -0.35 6.31 -39.56 -0.25 -0.60 16 18 Cl -0.05 -0.35 28.94 -51.86 -1.50 -1.86 16 19 C -0.07 -0.50 9.59 -39.47 -0.38 -0.88 16 20 C -0.07 -0.58 6.33 -39.41 -0.25 -0.83 16 21 Cl -0.04 -0.32 28.50 -51.86 -1.48 -1.80 16 22 C 0.18 1.95 6.71 -38.68 -0.26 1.69 16 23 O -0.46 -5.16 11.03 -40.70 -0.45 -5.61 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.40 4.18 6.50 -40.82 -0.27 3.92 16 32 H 0.15 1.04 6.40 -52.49 -0.34 0.71 16 33 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.40 3.05 9.06 45.56 0.41 3.46 16 LS Contribution 330.59 15.07 4.98 4.98 Total: -1.00 -32.35 330.59 -8.94 -41.29 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -2.69 Total: 0.91 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -2.93 Total: -9.06 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.40 Total: -35.74 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.70 Total: -14.92 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -2.98 Total: -3.65 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.35 -8.94 -41.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931970308.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.826 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.17 seconds