Wall clock time and date at job start Tue Mar 31 2020 11:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99853 * 2 1 4 4 H 1.48500 * 109.47239 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47085 * 300.00194 * 3 2 1 6 6 H 1.48509 * 109.46867 * 59.99896 * 3 2 1 7 7 C 1.37877 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99477 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00172 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46942 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.46898 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99687 * 179.97438 * 12 11 10 14 14 O 1.21588 * 120.00216 * 0.02562 * 13 12 11 15 15 C 1.47532 * 119.99691 * 180.02562 * 13 12 11 16 16 C 1.39738 * 120.18355 * 359.97438 * 15 13 12 17 17 C 1.37879 * 119.92003 * 180.02562 * 16 15 13 18 18 Cl 1.73595 * 119.86063 * 180.02562 * 17 16 15 19 19 C 1.38651 * 120.28131 * 0.02991 * 17 16 15 20 20 C 1.38138 * 120.36258 * 359.66883 * 19 17 16 21 21 Cl 1.73601 * 119.95936 * 180.32287 * 20 19 17 22 22 C 1.38806 * 120.07601 * 0.60703 * 20 19 17 23 23 O 1.35699 * 120.13931 * 179.69291 * 22 20 19 24 24 H 0.96995 * 119.99834 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46740 * 60.00191 * 9 7 2 26 26 H 1.08998 * 109.46948 * 299.99856 * 9 7 2 27 27 H 1.09004 * 109.47419 * 59.99961 * 10 9 7 28 28 H 1.09007 * 109.47202 * 300.00006 * 10 9 7 29 29 H 1.08992 * 109.47114 * 59.99939 * 11 10 9 30 30 H 1.08998 * 109.46726 * 299.99629 * 11 10 9 31 31 H 0.97002 * 120.00083 * 359.97438 * 12 11 10 32 32 H 1.07995 * 120.03766 * 0.02562 * 16 15 13 33 33 H 1.08001 * 119.81534 * 179.97438 * 19 17 16 34 34 H 0.96700 * 114.00288 * 269.72717 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4804 -4.9871 0.0012 12 7 2.4325 -6.1006 0.0018 13 6 1.9832 -7.3713 0.0019 14 8 0.7878 -7.5935 0.0010 15 6 2.9420 -8.4926 0.0031 16 6 4.3167 -8.2416 0.0036 17 6 5.2079 -9.2936 0.0042 18 17 6.9153 -8.9800 0.0054 19 6 4.7462 -10.6010 0.0036 20 6 3.3898 -10.8625 0.0094 21 17 2.8233 -12.5035 0.0172 22 6 2.4793 -9.8148 0.0031 23 8 1.1466 -10.0703 0.0025 24 1 -0.4850 0.8400 0.0004 25 1 0.6249 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8903 27 1 2.8714 -3.6039 0.8923 28 1 2.8728 -3.6046 -0.8877 29 1 0.8548 -5.0450 -0.8894 30 1 0.8528 -5.0446 0.8905 31 1 3.3862 -5.9233 0.0021 32 1 4.6805 -7.2248 0.0035 33 1 5.4509 -11.4194 0.0037 34 1 0.7607 -10.1445 -0.8811 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931970308.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:09 Heat of formation + Delta-G solvation = -100.771302 kcal Electronic energy + Delta-G solvation = -20670.741497 eV Core-core repulsion = 17040.229037 eV Total energy + Delta-G solvation = -3630.512460 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.73745 -39.94183 -38.39521 -37.69439 -37.11810 -36.91712 -35.22536 -33.42832 -32.14159 -30.81554 -28.63818 -25.86273 -24.60613 -23.71780 -22.33562 -21.65160 -19.82846 -18.92167 -18.51306 -17.82966 -17.07934 -16.81391 -16.62009 -16.52941 -16.28556 -15.88007 -15.31215 -14.92994 -14.63468 -14.25781 -13.90154 -13.83787 -13.66221 -13.52850 -13.34505 -12.78025 -12.55425 -12.37641 -12.34339 -12.18931 -12.07307 -11.93119 -11.67276 -11.58013 -11.22305 -10.93466 -10.55268 -10.35995 -10.08735 -9.74947 -8.18952 -6.30034 -0.65032 -0.35302 0.63678 1.09147 1.42403 1.42835 1.50107 1.55689 2.01258 2.31722 2.42907 2.86129 3.15275 3.33852 3.66840 3.77295 3.93612 4.07914 4.22109 4.22674 4.46714 4.55338 4.65730 4.76068 4.94949 4.97081 5.04213 5.18121 5.36130 5.53390 5.72068 5.85540 6.23000 6.43842 6.55333 6.88048 7.09697 7.39726 8.93371 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.019409 B = 0.002516 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.293151 B =11124.269619 C =12538.196114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.966 3.034 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.538 4.538 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.103 4.103 11 C 0.131 3.869 12 N -0.708 5.708 13 C 0.554 3.446 14 O -0.558 6.558 15 C -0.151 4.151 16 C -0.049 4.049 17 C -0.044 4.044 18 Cl -0.037 7.037 19 C -0.051 4.051 20 C -0.069 4.069 21 Cl -0.034 7.034 22 C 0.177 3.823 23 O -0.479 6.479 24 H 0.263 0.737 25 H -0.007 1.007 26 H -0.008 1.008 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.413 0.587 32 H 0.167 0.833 33 H 0.176 0.824 34 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.574 -25.426 -1.784 29.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.141 4.141 11 C 0.007 3.993 12 N -0.361 5.361 13 C 0.341 3.659 14 O -0.437 6.437 15 C -0.156 4.156 16 C -0.068 4.068 17 C -0.071 4.071 18 Cl -0.008 7.008 19 C -0.070 4.070 20 C -0.097 4.097 21 Cl -0.005 7.005 22 C 0.129 3.871 23 O -0.293 6.293 24 H 0.072 0.928 25 H 0.012 0.988 26 H 0.010 0.990 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.251 0.749 32 H 0.184 0.816 33 H 0.193 0.807 34 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 13.723 -25.560 -1.195 29.035 hybrid contribution 0.122 1.016 -0.436 1.112 sum 13.845 -24.544 -1.632 28.227 Atomic orbital electron populations 1.70115 1.07934 1.27699 1.51861 1.26015 0.95724 1.03529 0.94876 0.85387 0.79268 0.78748 0.77560 1.18123 1.20638 1.20712 1.21715 0.93780 0.91979 1.50163 0.91463 1.18948 0.94463 0.92930 0.95144 1.21616 0.98489 0.91656 1.02324 1.21295 0.91798 0.85083 1.01112 1.45884 1.11335 1.04782 1.74067 1.18167 0.87844 0.83097 0.76755 1.90819 1.17343 1.85008 1.50568 1.20095 0.93681 0.92670 1.09117 1.21420 0.89907 1.00890 0.94608 1.20569 0.86733 0.93542 1.06241 1.98424 1.09767 1.95806 1.96801 1.21258 0.93535 0.96892 0.95347 1.21108 0.93391 0.86851 1.08370 1.98405 1.89383 1.15883 1.96782 1.18347 0.84675 0.89390 0.94736 1.84740 1.16880 1.92693 1.34956 0.92849 0.98818 0.98970 0.91271 0.91079 0.92599 0.92977 0.74868 0.81600 0.80670 0.72587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.66 13.29 21.45 0.28 -56.38 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.97 43.27 29.54 68.60 2.03 45.30 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.54 -29.46 9.11 25.60 0.23 -29.23 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.02 1.16 4.97 29.85 0.15 1.31 16 10 C -0.10 -3.78 5.27 30.59 0.16 -3.61 16 11 C 0.13 4.38 5.67 86.38 0.49 4.87 16 12 N -0.71 -18.35 5.51 -466.27 -2.57 -20.92 16 13 C 0.55 15.50 7.76 86.69 0.67 16.18 16 14 O -0.56 -20.07 15.16 16.94 0.26 -19.82 16 15 C -0.15 -3.17 5.88 -20.02 -0.12 -3.29 16 16 C -0.05 -0.74 9.31 22.55 0.21 -0.53 16 17 C -0.04 -0.58 6.31 22.28 0.14 -0.44 16 18 Cl -0.04 -0.44 28.94 -2.72 -0.08 -0.52 16 19 C -0.05 -0.63 9.59 22.34 0.21 -0.42 16 20 C -0.07 -1.11 6.33 22.38 0.14 -0.97 16 21 Cl -0.03 -0.51 28.50 -2.72 -0.08 -0.59 16 22 C 0.18 3.60 6.71 22.85 0.15 3.76 16 23 O -0.48 -10.81 11.03 -69.26 -0.76 -11.58 16 24 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 25 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 29 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.41 7.83 6.50 -92.71 -0.60 7.23 16 32 H 0.17 1.84 6.40 -2.91 -0.02 1.82 16 33 H 0.18 1.33 8.06 -2.91 -0.02 1.30 16 34 H 0.41 6.49 9.06 -74.06 -0.67 5.82 16 Total: -1.00 -70.42 330.59 1.89 -68.54 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -0.10 Total: 8.09 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 2.91 Total: -12.13 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -2.28 Total: -77.30 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.51 Total: -31.39 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.16 Total: -1.11 kcal Total: -70.42 1.89 -68.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931970308.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.234 kcal (2) G-P(sol) polarization free energy of solvation -70.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds