Wall clock time and date at job start Tue Mar 31 2020 11:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09008 * 109.47229 * 55.00128 * 3 2 1 5 5 C 1.50698 * 109.47387 * 175.00027 * 3 2 1 6 6 H 1.07999 * 120.00181 * 119.99635 * 5 3 2 7 7 C 1.37879 * 120.00000 * 300.00183 * 5 3 2 8 8 N 1.31518 * 120.00060 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00038 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47349 * 59.99807 * 9 7 5 11 11 H 1.48505 * 109.47066 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46945 * 299.99598 * 9 7 5 13 13 N 1.46500 * 109.47098 * 295.00415 * 3 2 1 14 14 C 1.34773 * 120.00431 * 85.00044 * 13 3 2 15 15 O 1.21593 * 119.99894 * 359.97438 * 14 13 3 16 16 C 1.47535 * 120.00040 * 179.72702 * 14 13 3 17 17 C 1.39738 * 120.18097 * 359.97438 * 16 14 13 18 18 C 1.37886 * 119.91461 * 179.69766 * 17 16 14 19 19 Cl 1.73595 * 119.85554 * 180.32199 * 18 17 16 20 20 C 1.38640 * 120.28159 * 0.60841 * 18 17 16 21 21 C 1.38140 * 120.36649 * 359.66884 * 20 18 17 22 22 Cl 1.73606 * 119.95888 * 180.02562 * 21 20 18 23 23 C 1.38801 * 120.07829 * 0.02691 * 21 20 18 24 24 O 1.35697 * 120.14202 * 180.02562 * 23 21 20 25 25 H 1.08997 * 109.47148 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 27 27 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 28 28 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 29 29 H 1.09004 * 109.47247 * 119.99804 * 2 1 3 30 30 H 0.97000 * 120.00268 * 179.97438 * 8 7 5 31 31 H 0.97000 * 119.99456 * 264.99607 * 13 3 2 32 32 H 1.07997 * 120.03802 * 359.97438 * 17 16 14 33 33 H 1.08003 * 119.81322 * 179.69602 * 20 18 17 34 34 H 0.96701 * 114.00118 * 269.97280 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0049 0.8813 1.3818 10 1 6.4994 2.2815 1.3822 11 1 6.3978 0.2167 2.6504 12 1 6.5975 0.1473 0.2348 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3416 2.6318 -0.4319 16 6 0.0471 3.3293 -2.6255 17 6 0.9389 3.3739 -3.7004 18 6 0.5682 3.9912 -4.8763 19 17 1.6741 4.0384 -6.2135 20 6 -0.6818 4.5796 -4.9931 21 6 -1.5703 4.5474 -3.9359 22 17 -3.1330 5.2869 -4.0940 23 6 -1.2152 3.9245 -2.7474 24 8 -2.0873 3.8916 -1.7083 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8293 -0.0611 2.9499 31 1 2.2719 2.1231 -1.9977 32 1 1.9155 2.9215 -3.6117 33 1 -0.9624 5.0654 -5.9160 34 1 -2.0099 4.6441 -1.1059 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935399369.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:52 Heat of formation + Delta-G solvation = -70.691871 kcal Electronic energy + Delta-G solvation = -21911.288032 eV Core-core repulsion = 18282.079914 eV Total energy + Delta-G solvation = -3629.208118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47912 -38.52285 -37.39525 -36.75622 -36.15233 -35.05813 -32.66712 -31.66545 -30.42992 -29.76094 -27.04851 -24.36795 -23.15524 -22.62439 -20.67288 -19.47257 -18.75179 -17.88322 -16.70885 -16.43709 -15.77026 -15.29408 -15.22464 -14.94051 -14.44915 -14.26674 -13.77509 -13.33093 -12.88834 -12.77936 -12.63889 -12.45644 -12.12802 -11.58228 -11.47318 -11.28371 -11.24723 -11.07295 -11.02673 -10.87539 -10.83501 -10.36277 -10.22098 -9.66627 -9.22272 -9.18487 -9.09773 -8.77293 -8.54306 -7.91681 -6.16557 -4.26669 0.45957 0.63527 1.53968 1.99593 2.74507 3.22977 3.28814 3.29393 3.74588 3.78282 3.97178 4.31010 4.51174 4.71733 4.84630 5.01287 5.14984 5.35080 5.44269 5.68002 5.86024 6.04490 6.37995 6.44794 6.63963 7.01816 7.16100 7.28967 7.36086 7.53563 7.57005 7.66519 7.83923 8.12755 8.53356 8.70099 8.98000 9.40505 10.88620 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.015741 B = 0.003941 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.362581 B = 7102.553883 C = 8420.290160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.699 5.699 14 C 0.543 3.457 15 O -0.520 6.520 16 C -0.127 4.127 17 C -0.061 4.061 18 C -0.044 4.044 19 Cl -0.054 7.054 20 C -0.074 4.074 21 C -0.066 4.066 22 Cl -0.045 7.045 23 C 0.180 3.820 24 O -0.460 6.460 25 H 0.023 0.977 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.031 0.969 29 H 0.100 0.900 30 H 0.266 0.734 31 H 0.387 0.613 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.967 8.869 -14.544 18.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.070 0.930 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.348 5.348 14 C 0.327 3.673 15 O -0.398 6.398 16 C -0.131 4.131 17 C -0.080 4.080 18 C -0.071 4.071 19 Cl -0.025 7.025 20 C -0.094 4.094 21 C -0.094 4.094 22 Cl -0.016 7.016 23 C 0.132 3.868 24 O -0.271 6.271 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.220 0.780 32 H 0.167 0.833 33 H 0.167 0.833 34 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -7.719 8.274 -14.000 18.001 hybrid contribution 1.425 0.445 -0.302 1.523 sum -6.294 8.719 -14.301 17.893 Atomic orbital electron populations 1.21842 0.98187 0.98185 1.01297 1.21950 0.92708 0.99634 1.02395 1.18847 0.94315 0.89250 0.80517 0.93040 1.21167 0.90551 1.39427 1.06436 0.92105 1.24869 0.98621 0.94694 0.95326 1.69880 1.35278 1.37322 1.09310 0.86515 0.84785 0.78341 0.77512 1.20162 1.21105 1.20129 1.46498 1.14015 1.55471 1.18784 1.17682 0.83376 0.80107 0.86140 1.90810 1.50846 1.59142 1.39019 1.20762 0.93348 1.02532 0.96483 1.21355 1.00157 0.96275 0.90245 1.20547 0.92155 1.03687 0.90670 1.98392 1.61774 1.97388 1.44965 1.20890 0.91135 0.98692 0.98643 1.21128 0.89722 1.02578 0.95963 1.98384 1.24782 1.80676 1.97743 1.18214 0.87577 0.93222 0.87810 1.84776 1.55192 1.50127 1.36992 0.95796 0.93073 0.94261 0.94978 0.88165 0.92429 0.77986 0.83284 0.83350 0.74108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.56 2.24 -69.09 -0.15 6.41 16 4 H 0.05 1.44 7.58 -51.92 -0.39 1.04 16 5 C -0.54 -13.65 8.73 -34.44 -0.30 -13.95 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.02 11.29 55.43 0.63 -23.39 16 9 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.70 -13.76 4.97 -55.98 -0.28 -14.03 16 14 C 0.54 10.27 6.33 -12.47 -0.08 10.19 16 15 O -0.52 -11.36 12.29 -16.61 -0.20 -11.57 16 16 C -0.13 -1.89 5.88 -104.85 -0.62 -2.50 16 17 C -0.06 -0.75 9.31 -39.15 -0.36 -1.11 16 18 C -0.04 -0.47 6.31 -39.56 -0.25 -0.72 16 19 Cl -0.05 -0.53 28.94 -51.86 -1.50 -2.03 16 20 C -0.07 -0.75 9.59 -39.47 -0.38 -1.13 16 21 C -0.07 -0.77 6.33 -39.41 -0.25 -1.02 16 22 Cl -0.04 -0.47 28.50 -51.86 -1.48 -1.95 16 23 C 0.18 2.49 6.71 -38.68 -0.26 2.23 16 24 O -0.46 -6.58 11.03 -40.69 -0.45 -7.03 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 27 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 30 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.39 6.57 6.57 -40.82 -0.27 6.30 16 32 H 0.15 1.68 6.40 -52.49 -0.34 1.34 16 33 H 0.15 1.18 8.06 -52.48 -0.42 0.75 16 34 H 0.40 4.32 9.06 45.56 0.41 4.73 16 LS Contribution 318.01 15.07 4.79 4.79 Total: -1.00 -29.00 318.01 -8.49 -37.49 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -2.40 Total: 8.52 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -2.58 Total: -5.85 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.35 Total: -37.43 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.65 Total: -18.59 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -2.98 Total: -3.98 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.00 -8.49 -37.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399369.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.202 kcal (2) G-P(sol) polarization free energy of solvation -28.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds