Wall clock time and date at job start Tue Mar 31 2020 11:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09008 * 109.47229 * 55.00128 * 3 2 1 5 5 C 1.50698 * 109.47387 * 175.00027 * 3 2 1 6 6 H 1.07999 * 120.00181 * 119.99635 * 5 3 2 7 7 C 1.37879 * 120.00000 * 300.00183 * 5 3 2 8 8 N 1.31518 * 120.00060 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00038 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47349 * 59.99807 * 9 7 5 11 11 H 1.48505 * 109.47066 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46945 * 299.99598 * 9 7 5 13 13 N 1.46500 * 109.47098 * 295.00415 * 3 2 1 14 14 C 1.34773 * 120.00431 * 85.00044 * 13 3 2 15 15 O 1.21593 * 119.99894 * 359.97438 * 14 13 3 16 16 C 1.47535 * 120.00040 * 179.72702 * 14 13 3 17 17 C 1.39738 * 120.18097 * 359.97438 * 16 14 13 18 18 C 1.37886 * 119.91461 * 179.69766 * 17 16 14 19 19 Cl 1.73595 * 119.85554 * 180.32199 * 18 17 16 20 20 C 1.38640 * 120.28159 * 0.60841 * 18 17 16 21 21 C 1.38140 * 120.36649 * 359.66884 * 20 18 17 22 22 Cl 1.73606 * 119.95888 * 180.02562 * 21 20 18 23 23 C 1.38801 * 120.07829 * 0.02691 * 21 20 18 24 24 O 1.35697 * 120.14202 * 180.02562 * 23 21 20 25 25 H 1.08997 * 109.47148 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 27 27 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 28 28 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 29 29 H 1.09004 * 109.47247 * 119.99804 * 2 1 3 30 30 H 0.97000 * 120.00268 * 179.97438 * 8 7 5 31 31 H 0.97000 * 119.99456 * 264.99607 * 13 3 2 32 32 H 1.07997 * 120.03802 * 359.97438 * 17 16 14 33 33 H 1.08003 * 119.81322 * 179.69602 * 20 18 17 34 34 H 0.96701 * 114.00118 * 269.97280 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0049 0.8813 1.3818 10 1 6.4994 2.2815 1.3822 11 1 6.3978 0.2167 2.6504 12 1 6.5975 0.1473 0.2348 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3416 2.6318 -0.4319 16 6 0.0471 3.3293 -2.6255 17 6 0.9389 3.3739 -3.7004 18 6 0.5682 3.9912 -4.8763 19 17 1.6741 4.0384 -6.2135 20 6 -0.6818 4.5796 -4.9931 21 6 -1.5703 4.5474 -3.9359 22 17 -3.1330 5.2869 -4.0940 23 6 -1.2152 3.9245 -2.7474 24 8 -2.0873 3.8916 -1.7083 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8293 -0.0611 2.9499 31 1 2.2719 2.1231 -1.9977 32 1 1.9155 2.9215 -3.6117 33 1 -0.9624 5.0654 -5.9160 34 1 -2.0099 4.6441 -1.1059 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935399369.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:52 Heat of formation + Delta-G solvation = -88.434318 kcal Electronic energy + Delta-G solvation = -21912.057403 eV Core-core repulsion = 18282.079914 eV Total energy + Delta-G solvation = -3629.977488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.64940 -39.91895 -38.34708 -37.67281 -37.07240 -36.83190 -34.38188 -33.25088 -31.85260 -30.75522 -28.91547 -25.70056 -24.74520 -23.76909 -22.20911 -21.19794 -19.94637 -19.15878 -18.05966 -17.76849 -16.97195 -16.90905 -16.54894 -16.20244 -15.94142 -15.69003 -14.95402 -14.60499 -14.58135 -13.87730 -13.83596 -13.70332 -13.44694 -13.30970 -13.15770 -12.90101 -12.64311 -12.34211 -12.21560 -12.09376 -12.08102 -12.00275 -11.85432 -11.57172 -11.05380 -10.72478 -10.50160 -10.21738 -9.74060 -9.61513 -8.14453 -6.31764 -0.55983 -0.30907 0.65603 1.11656 1.47312 1.48361 1.56071 1.65687 2.31200 2.46374 2.53783 2.92965 3.15388 3.50976 3.73753 3.84538 4.01290 4.24812 4.50380 4.51977 4.58019 4.71665 4.75736 4.84837 5.05556 5.11873 5.27629 5.43986 5.54569 5.60914 5.79637 5.91275 6.17156 6.59515 6.74827 6.91688 7.33192 7.50406 8.90613 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.015741 B = 0.003941 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.362581 B = 7102.553883 C = 8420.290160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.281 3.719 4 H 0.004 0.996 5 C -0.549 4.549 6 H 0.073 0.927 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.698 5.698 14 C 0.543 3.457 15 O -0.557 6.557 16 C -0.148 4.148 17 C -0.054 4.054 18 C -0.041 4.041 19 Cl -0.037 7.037 20 C -0.053 4.053 21 C -0.067 4.067 22 Cl -0.033 7.033 23 C 0.174 3.826 24 O -0.477 6.477 25 H 0.043 0.957 26 H 0.028 0.972 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.265 0.735 31 H 0.401 0.599 32 H 0.158 0.842 33 H 0.178 0.822 34 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.328 9.666 -17.229 20.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.178 3.822 4 H 0.022 0.978 5 C -0.587 4.587 6 H 0.091 0.909 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.190 1.190 13 N -0.348 5.348 14 C 0.330 3.670 15 O -0.437 6.437 16 C -0.153 4.153 17 C -0.074 4.074 18 C -0.068 4.068 19 Cl -0.008 7.008 20 C -0.073 4.073 21 C -0.095 4.095 22 Cl -0.004 7.004 23 C 0.126 3.874 24 O -0.290 6.290 25 H 0.062 0.938 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.237 0.763 32 H 0.176 0.824 33 H 0.196 0.804 34 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -7.076 9.093 -16.728 20.312 hybrid contribution 1.155 0.272 0.454 1.270 sum -5.921 9.365 -16.274 19.687 Atomic orbital electron populations 1.21671 0.97045 0.99066 1.00236 1.21805 0.93618 0.99243 1.01378 1.18399 0.93723 0.89087 0.80992 0.97820 1.21531 0.91298 1.39131 1.06782 0.90916 1.25721 1.03097 0.94343 0.95017 1.70036 1.37089 1.38211 1.09831 0.85465 0.79330 0.78449 0.77504 1.19628 1.21366 1.18973 1.46211 1.14976 1.55749 1.17855 1.18192 0.82389 0.79267 0.87182 1.90785 1.51715 1.60401 1.40814 1.20316 0.94838 1.04703 0.95418 1.21394 0.99938 0.95960 0.90060 1.20537 0.92649 1.03095 0.90570 1.98407 1.61281 1.97277 1.43875 1.21218 0.90171 0.96897 0.98988 1.21081 0.90533 1.02439 0.95411 1.98393 1.23993 1.80340 1.97637 1.18343 0.87172 0.93482 0.88438 1.84730 1.55451 1.51181 1.37688 0.93801 0.95308 0.94066 0.94099 0.90828 0.92601 0.76317 0.82427 0.80430 0.72885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.51 71.98 0.61 -4.93 16 2 C -0.12 -5.90 5.45 30.59 0.17 -5.73 16 3 C 0.28 13.97 2.24 44.24 0.10 14.07 16 4 H 0.00 0.23 7.58 -2.38 -0.02 0.21 16 5 C -0.55 -28.11 8.73 25.60 0.22 -27.88 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.98 5.29 84.65 0.45 1.43 16 8 N -0.91 -51.17 11.29 21.45 0.24 -50.93 16 9 Si 0.97 41.02 29.54 68.60 2.03 43.05 16 10 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 11 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 13 N -0.70 -27.78 4.97 -449.27 -2.23 -30.02 16 14 C 0.54 20.91 6.33 86.70 0.55 21.45 16 15 O -0.56 -25.29 12.29 16.93 0.21 -25.08 16 16 C -0.15 -4.33 5.88 -20.01 -0.12 -4.45 16 17 C -0.05 -1.24 9.31 22.55 0.21 -1.03 16 18 C -0.04 -0.78 6.31 22.28 0.14 -0.64 16 19 Cl -0.04 -0.62 28.94 -2.72 -0.08 -0.70 16 20 C -0.05 -0.92 9.59 22.34 0.21 -0.70 16 21 C -0.07 -1.41 6.33 22.38 0.14 -1.26 16 22 Cl -0.03 -0.62 28.50 -2.72 -0.08 -0.70 16 23 C 0.17 4.66 6.71 22.85 0.15 4.81 16 24 O -0.48 -13.73 11.03 -69.23 -0.76 -14.49 16 25 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.03 1.39 7.84 -2.39 -0.02 1.37 16 27 H 0.04 1.82 5.64 -2.39 -0.01 1.80 16 28 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.07 4.00 5.95 -2.38 -0.01 3.98 16 30 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 31 H 0.40 13.40 6.57 -92.71 -0.61 12.79 16 32 H 0.16 3.25 6.40 -2.91 -0.02 3.23 16 33 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.41 9.12 9.06 -74.06 -0.67 8.45 16 Total: -1.00 -63.59 318.01 2.07 -61.52 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -0.10 Total: 22.22 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 2.84 Total: -4.88 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -1.99 Total: -80.95 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -0.56 Total: -39.57 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.16 Total: -1.39 kcal Total: -63.59 2.07 -61.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399369.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.909 kcal (2) G-P(sol) polarization free energy of solvation -63.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds