Wall clock time and date at job start Tue Mar 31 2020 11:24:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52996 * 109.47152 * 2 1
4 4 H 1.09008 * 109.47229 * 55.00128 * 3 2 1
5 5 C 1.50698 * 109.47387 * 175.00027 * 3 2 1
6 6 H 1.07999 * 120.00181 * 119.99635 * 5 3 2
7 7 C 1.37879 * 120.00000 * 300.00183 * 5 3 2
8 8 N 1.31518 * 120.00060 * 359.97438 * 7 5 3
9 9 Si 1.86797 * 120.00038 * 180.02562 * 7 5 3
10 10 H 1.48491 * 109.47349 * 59.99807 * 9 7 5
11 11 H 1.48505 * 109.47066 * 180.02562 * 9 7 5
12 12 H 1.48508 * 109.46945 * 299.99598 * 9 7 5
13 13 N 1.46500 * 109.47098 * 295.00415 * 3 2 1
14 14 C 1.34773 * 120.00431 * 85.00044 * 13 3 2
15 15 O 1.21593 * 119.99894 * 359.97438 * 14 13 3
16 16 C 1.47535 * 120.00040 * 179.72702 * 14 13 3
17 17 C 1.39738 * 120.18097 * 359.97438 * 16 14 13
18 18 C 1.37886 * 119.91461 * 179.69766 * 17 16 14
19 19 Cl 1.73595 * 119.85554 * 180.32199 * 18 17 16
20 20 C 1.38640 * 120.28159 * 0.60841 * 18 17 16
21 21 C 1.38140 * 120.36649 * 359.66884 * 20 18 17
22 22 Cl 1.73606 * 119.95888 * 180.02562 * 21 20 18
23 23 C 1.38801 * 120.07829 * 0.02691 * 21 20 18
24 24 O 1.35697 * 120.14202 * 180.02562 * 23 21 20
25 25 H 1.08997 * 109.47148 * 180.02562 * 1 2 3
26 26 H 1.09000 * 109.46777 * 299.99691 * 1 2 3
27 27 H 1.08995 * 109.46828 * 59.99774 * 1 2 3
28 28 H 1.09000 * 109.47154 * 239.99920 * 2 1 3
29 29 H 1.09004 * 109.47247 * 119.99804 * 2 1 3
30 30 H 0.97000 * 120.00268 * 179.97438 * 8 7 5
31 31 H 0.97000 * 119.99456 * 264.99607 * 13 3 2
32 32 H 1.07997 * 120.03802 * 359.97438 * 17 16 14
33 33 H 1.08003 * 119.81322 * 179.69602 * 20 18 17
34 34 H 0.96701 * 114.00118 * 269.97280 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9815 0.8419
5 6 3.5419 1.4443 0.1238
6 1 4.1472 1.8888 -0.6523
7 6 4.1433 0.8784 1.2280
8 7 3.4062 0.3374 2.1733
9 14 6.0049 0.8813 1.3818
10 1 6.4994 2.2815 1.3822
11 1 6.3978 0.2167 2.6504
12 1 6.5975 0.1473 0.2348
13 7 1.6524 2.0975 -1.2518
14 6 0.4351 2.6644 -1.3669
15 8 -0.3416 2.6318 -0.4319
16 6 0.0471 3.3293 -2.6255
17 6 0.9389 3.3739 -3.7004
18 6 0.5682 3.9912 -4.8763
19 17 1.6741 4.0384 -6.2135
20 6 -0.6818 4.5796 -4.9931
21 6 -1.5703 4.5474 -3.9359
22 17 -3.1330 5.2869 -4.0940
23 6 -1.2152 3.9245 -2.7474
24 8 -2.0873 3.8916 -1.7083
25 1 -0.3633 -1.0276 0.0005
26 1 -0.3633 0.5138 0.8900
27 1 -0.3633 0.5139 -0.8899
28 1 1.8934 -0.5138 -0.8900
29 1 1.8934 -0.5138 0.8900
30 1 3.8293 -0.0611 2.9499
31 1 2.2719 2.1231 -1.9977
32 1 1.9155 2.9215 -3.6117
33 1 -0.9624 5.0654 -5.9160
34 1 -2.0099 4.6441 -1.1059
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000935399369.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:24:52
Heat of formation + Delta-G solvation = -88.434318 kcal
Electronic energy + Delta-G solvation = -21912.057403 eV
Core-core repulsion = 18282.079914 eV
Total energy + Delta-G solvation = -3629.977488 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 317.037 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-41.64940 -39.91895 -38.34708 -37.67281 -37.07240 -36.83190 -34.38188 -33.25088
-31.85260 -30.75522 -28.91547 -25.70056 -24.74520 -23.76909 -22.20911 -21.19794
-19.94637 -19.15878 -18.05966 -17.76849 -16.97195 -16.90905 -16.54894 -16.20244
-15.94142 -15.69003 -14.95402 -14.60499 -14.58135 -13.87730 -13.83596 -13.70332
-13.44694 -13.30970 -13.15770 -12.90101 -12.64311 -12.34211 -12.21560 -12.09376
-12.08102 -12.00275 -11.85432 -11.57172 -11.05380 -10.72478 -10.50160 -10.21738
-9.74060 -9.61513 -8.14453 -6.31764 -0.55983 -0.30907 0.65603 1.11656
1.47312 1.48361 1.56071 1.65687 2.31200 2.46374 2.53783 2.92965
3.15388 3.50976 3.73753 3.84538 4.01290 4.24812 4.50380 4.51977
4.58019 4.71665 4.75736 4.84837 5.05556 5.11873 5.27629 5.43986
5.54569 5.60914 5.79637 5.91275 6.17156 6.59515 6.74827 6.91688
7.33192 7.50406 8.90613
Molecular weight = 317.04amu
Principal moments of inertia in cm(-1)
A = 0.015741 B = 0.003941 C = 0.003325
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1778.362581 B = 7102.553883 C = 8420.290160
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.121 4.121
3 C 0.281 3.719
4 H 0.004 0.996
5 C -0.549 4.549
6 H 0.073 0.927
7 C 0.019 3.981
8 N -0.914 5.914
9 Si 0.968 3.032
10 H -0.271 1.271
11 H -0.288 1.288
12 H -0.265 1.265
13 N -0.698 5.698
14 C 0.543 3.457
15 O -0.557 6.557
16 C -0.148 4.148
17 C -0.054 4.054
18 C -0.041 4.041
19 Cl -0.037 7.037
20 C -0.053 4.053
21 C -0.067 4.067
22 Cl -0.033 7.033
23 C 0.174 3.826
24 O -0.477 6.477
25 H 0.043 0.957
26 H 0.028 0.972
27 H 0.040 0.960
28 H 0.040 0.960
29 H 0.073 0.927
30 H 0.265 0.735
31 H 0.401 0.599
32 H 0.158 0.842
33 H 0.178 0.822
34 H 0.410 0.590
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.328 9.666 -17.229 20.744
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C -0.160 4.160
3 C 0.178 3.822
4 H 0.022 0.978
5 C -0.587 4.587
6 H 0.091 0.909
7 C -0.182 4.182
8 N -0.552 5.552
9 Si 0.793 3.207
10 H -0.196 1.196
11 H -0.214 1.214
12 H -0.190 1.190
13 N -0.348 5.348
14 C 0.330 3.670
15 O -0.437 6.437
16 C -0.153 4.153
17 C -0.074 4.074
18 C -0.068 4.068
19 Cl -0.008 7.008
20 C -0.073 4.073
21 C -0.095 4.095
22 Cl -0.004 7.004
23 C 0.126 3.874
24 O -0.290 6.290
25 H 0.062 0.938
26 H 0.047 0.953
27 H 0.059 0.941
28 H 0.059 0.941
29 H 0.092 0.908
30 H 0.074 0.926
31 H 0.237 0.763
32 H 0.176 0.824
33 H 0.196 0.804
34 H 0.271 0.729
Dipole moment (debyes) X Y Z Total
from point charges -7.076 9.093 -16.728 20.312
hybrid contribution 1.155 0.272 0.454 1.270
sum -5.921 9.365 -16.274 19.687
Atomic orbital electron populations
1.21671 0.97045 0.99066 1.00236 1.21805 0.93618 0.99243 1.01378
1.18399 0.93723 0.89087 0.80992 0.97820 1.21531 0.91298 1.39131
1.06782 0.90916 1.25721 1.03097 0.94343 0.95017 1.70036 1.37089
1.38211 1.09831 0.85465 0.79330 0.78449 0.77504 1.19628 1.21366
1.18973 1.46211 1.14976 1.55749 1.17855 1.18192 0.82389 0.79267
0.87182 1.90785 1.51715 1.60401 1.40814 1.20316 0.94838 1.04703
0.95418 1.21394 0.99938 0.95960 0.90060 1.20537 0.92649 1.03095
0.90570 1.98407 1.61281 1.97277 1.43875 1.21218 0.90171 0.96897
0.98988 1.21081 0.90533 1.02439 0.95411 1.98393 1.23993 1.80340
1.97637 1.18343 0.87172 0.93482 0.88438 1.84730 1.55451 1.51181
1.37688 0.93801 0.95308 0.94066 0.94099 0.90828 0.92601 0.76317
0.82427 0.80430 0.72885
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.55 8.51 71.98 0.61 -4.93 16
2 C -0.12 -5.90 5.45 30.59 0.17 -5.73 16
3 C 0.28 13.97 2.24 44.24 0.10 14.07 16
4 H 0.00 0.23 7.58 -2.38 -0.02 0.21 16
5 C -0.55 -28.11 8.73 25.60 0.22 -27.88 16
6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16
7 C 0.02 0.98 5.29 84.65 0.45 1.43 16
8 N -0.91 -51.17 11.29 21.45 0.24 -50.93 16
9 Si 0.97 41.02 29.54 68.60 2.03 43.05 16
10 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16
11 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16
12 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16
13 N -0.70 -27.78 4.97 -449.27 -2.23 -30.02 16
14 C 0.54 20.91 6.33 86.70 0.55 21.45 16
15 O -0.56 -25.29 12.29 16.93 0.21 -25.08 16
16 C -0.15 -4.33 5.88 -20.01 -0.12 -4.45 16
17 C -0.05 -1.24 9.31 22.55 0.21 -1.03 16
18 C -0.04 -0.78 6.31 22.28 0.14 -0.64 16
19 Cl -0.04 -0.62 28.94 -2.72 -0.08 -0.70 16
20 C -0.05 -0.92 9.59 22.34 0.21 -0.70 16
21 C -0.07 -1.41 6.33 22.38 0.14 -1.26 16
22 Cl -0.03 -0.62 28.50 -2.72 -0.08 -0.70 16
23 C 0.17 4.66 6.71 22.85 0.15 4.81 16
24 O -0.48 -13.73 11.03 -69.23 -0.76 -14.49 16
25 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16
26 H 0.03 1.39 7.84 -2.39 -0.02 1.37 16
27 H 0.04 1.82 5.64 -2.39 -0.01 1.80 16
28 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16
29 H 0.07 4.00 5.95 -2.38 -0.01 3.98 16
30 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16
31 H 0.40 13.40 6.57 -92.71 -0.61 12.79 16
32 H 0.16 3.25 6.40 -2.91 -0.02 3.23 16
33 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16
34 H 0.41 9.12 9.06 -74.06 -0.67 8.45 16
Total: -1.00 -63.59 318.01 2.07 -61.52
By element:
Atomic # 1 Polarization: 22.31 SS G_CDS: -0.10 Total: 22.22 kcal
Atomic # 6 Polarization: -7.72 SS G_CDS: 2.84 Total: -4.88 kcal
Atomic # 7 Polarization: -78.96 SS G_CDS: -1.99 Total: -80.95 kcal
Atomic # 8 Polarization: -39.01 SS G_CDS: -0.56 Total: -39.57 kcal
Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal
Atomic # 17 Polarization: -1.24 SS G_CDS: -0.16 Total: -1.39 kcal
Total: -63.59 2.07 -61.52 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000935399369.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.909 kcal
(2) G-P(sol) polarization free energy of solvation -63.591 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.501 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.525 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.434 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds