Wall clock time and date at job start Tue Mar 31 2020 12:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99794 * 2 1 4 4 H 1.48496 * 109.47653 * 85.01383 * 3 2 1 5 5 H 1.48502 * 109.47192 * 205.01622 * 3 2 1 6 6 H 1.48505 * 109.47416 * 325.01055 * 3 2 1 7 7 C 1.38811 * 120.00055 * 180.27581 * 2 1 3 8 8 H 1.08001 * 119.99594 * 188.77506 * 7 2 1 9 9 N 1.36934 * 119.99892 * 8.76612 * 7 2 1 10 10 C 1.47427 * 125.64898 * 10.52013 * 9 7 2 11 11 C 1.55129 * 104.71984 * 155.81558 * 10 9 7 12 12 C 1.55156 * 101.49027 * 37.29120 * 11 10 9 13 13 H 1.09001 * 110.71513 * 82.69761 * 12 11 10 14 14 N 1.46496 * 110.72051 * 205.97051 * 12 11 10 15 15 C 1.34772 * 120.00125 * 199.98042 * 14 12 11 16 16 O 1.21715 * 119.99774 * 359.97438 * 15 14 12 17 17 C 1.46549 * 120.00156 * 180.02562 * 15 14 12 18 18 C 1.37956 * 126.22225 * 179.68968 * 17 15 14 19 19 C 1.39789 * 107.12922 * 179.84252 * 18 17 15 20 20 Cl 1.73596 * 126.06480 * 180.14980 * 19 18 17 21 21 C 1.35719 * 107.87339 * 0.41948 * 19 18 17 22 22 Cl 1.73601 * 125.58565 * 179.72238 * 21 19 18 23 23 N 1.35665 * 108.83435 * 359.73542 * 21 19 18 24 24 H 0.96997 * 125.70115 * 179.97438 * 23 21 19 25 25 C 1.47019 * 125.64794 * 190.81940 * 9 7 2 26 26 H 0.96993 * 119.99995 * 359.97438 * 1 2 3 27 27 H 1.09002 * 110.36325 * 274.74155 * 10 9 7 28 28 H 1.08999 * 110.36530 * 37.06435 * 10 9 7 29 29 H 1.09007 * 111.18627 * 279.18401 * 11 10 9 30 30 H 1.09001 * 110.93761 * 155.29183 * 11 10 9 31 31 H 0.97006 * 120.00298 * 19.97492 * 14 12 11 32 32 H 1.08006 * 126.43494 * 359.95353 * 18 17 15 33 33 H 1.09003 * 109.88459 * 300.44626 * 25 9 7 34 34 H 1.09003 * 109.88452 * 61.60765 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1074 1.3947 5 1 3.5964 1.4121 -0.5921 6 1 1.5043 2.6200 -0.8028 7 6 2.0103 -1.2021 -0.0058 8 1 3.0808 -1.2082 0.1369 9 7 1.3376 -2.3802 -0.1922 10 6 -0.0697 -2.5089 -0.6121 11 6 -0.1599 -3.9142 -1.2629 12 6 0.7866 -4.7385 -0.3507 13 1 0.2660 -5.0663 0.5491 14 7 1.3394 -5.8839 -1.0778 15 6 1.8442 -6.9331 -0.3990 16 8 1.8411 -6.9288 0.8182 17 6 2.3977 -8.0786 -1.1263 18 6 2.9497 -9.2113 -0.5647 19 6 3.3451 -10.0419 -1.6172 20 17 4.0960 -11.5995 -1.4633 21 6 3.0433 -9.4120 -2.7809 22 17 3.3457 -10.0329 -4.3736 23 7 2.4669 -8.2175 -2.4956 24 1 2.1558 -7.5693 -3.1466 25 6 1.8974 -3.7261 -0.0007 26 1 -0.4850 0.8400 0.0004 27 1 -0.7308 -2.4453 0.2522 28 1 -0.3204 -1.7373 -1.3401 29 1 0.2045 -3.8969 -2.2900 30 1 -1.1787 -4.2993 -1.2185 31 1 1.3422 -5.8872 -2.0478 32 1 3.0547 -9.4184 0.4901 33 1 2.7518 -3.8698 -0.6622 34 1 2.2037 -3.8560 1.0373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015453167.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:27 Heat of formation + Delta-G solvation = 24.797932 kcal Electronic energy + Delta-G solvation = -21201.401939 eV Core-core repulsion = 17608.627321 eV Total energy + Delta-G solvation = -3592.774618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.84267 -39.43538 -37.35860 -37.15136 -36.77452 -34.26598 -32.13591 -31.45752 -29.79885 -29.05059 -27.15841 -24.70277 -23.14514 -21.34461 -20.81162 -20.65583 -19.95491 -19.22078 -17.02044 -16.57401 -16.04554 -15.73012 -15.15065 -14.72872 -14.69627 -14.27567 -14.13690 -13.86792 -13.63477 -13.12695 -12.48896 -12.28834 -12.24417 -12.07467 -11.83142 -11.76698 -11.23981 -11.22505 -10.94783 -10.85362 -10.67438 -10.16791 -10.09114 -9.99288 -9.75457 -9.40457 -9.04302 -8.65469 -8.59326 -6.86983 -5.80765 -3.14043 0.87468 1.04646 1.75884 1.87149 2.76104 3.08052 3.14541 3.36720 3.42627 3.44484 4.42067 4.46223 4.55758 4.99049 5.18038 5.27777 5.33035 5.42473 5.65985 5.67383 5.81545 6.00790 6.03993 6.21697 6.32696 6.34531 6.51223 6.68144 6.85221 7.34558 7.42009 7.49699 7.70989 8.05466 8.19582 9.13147 9.74469 10.40664 11.32497 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.026461 B = 0.002534 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.923756 B =11048.527630 C =11252.217314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.230 4.230 8 H 0.076 0.924 9 N -0.602 5.602 10 C 0.175 3.825 11 C -0.151 4.151 12 C 0.132 3.868 13 H 0.097 0.903 14 N -0.713 5.713 15 C 0.586 3.414 16 O -0.515 6.515 17 C -0.009 4.009 18 C -0.089 4.089 19 C -0.098 4.098 20 Cl -0.029 7.029 21 C 0.096 3.904 22 Cl 0.003 6.997 23 N -0.522 5.522 24 H 0.428 0.572 25 C 0.128 3.872 26 H 0.254 0.746 27 H 0.032 0.968 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.392 0.608 32 H 0.169 0.831 33 H 0.025 0.975 34 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.481 -21.343 -9.039 23.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.215 1.215 5 H -0.206 1.206 6 H -0.216 1.216 7 C -0.358 4.358 8 H 0.094 0.906 9 N -0.329 5.329 10 C 0.049 3.951 11 C -0.191 4.191 12 C 0.029 3.971 13 H 0.115 0.885 14 N -0.363 5.363 15 C 0.372 3.628 16 O -0.390 6.390 17 C -0.123 4.123 18 C -0.115 4.115 19 C -0.133 4.133 20 Cl -0.001 7.001 21 C -0.049 4.049 22 Cl 0.031 6.969 23 N -0.123 5.123 24 H 0.268 0.732 25 C 0.001 3.999 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.225 0.775 32 H 0.186 0.814 33 H 0.043 0.957 34 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 3.444 -21.138 -8.336 22.982 hybrid contribution 0.429 0.972 -1.042 1.488 sum 3.873 -20.165 -9.378 22.574 Atomic orbital electron populations 1.69930 1.04981 1.25319 1.56398 1.24841 0.95666 0.97887 1.01920 0.86101 0.78718 0.83344 0.77596 1.21515 1.20576 1.21587 1.19028 0.91028 0.82602 1.43135 0.90582 1.44440 1.09291 0.99700 1.79447 1.21451 0.86076 0.90288 0.97244 1.23375 0.97841 0.99310 0.98528 1.22176 0.95168 0.84016 0.95786 0.88478 1.45986 1.61893 1.18750 1.09642 1.16825 0.78189 0.80828 0.86987 1.90907 1.56261 1.79714 1.12082 1.20628 1.11443 0.99553 0.80669 1.21168 0.99848 0.90905 0.99621 1.19606 1.09908 0.91939 0.91848 1.98351 1.80279 1.23521 1.97901 1.20563 1.07072 0.89210 0.88013 1.98430 1.94161 1.84561 1.19730 1.41914 1.47297 1.15499 1.07600 0.73207 1.21610 0.94086 0.85874 0.98325 0.93612 0.94996 0.90796 0.91724 0.91398 0.77451 0.81360 0.95724 0.95168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.41 10.67 55.49 0.59 -25.82 16 2 C -0.01 -0.18 5.41 -17.43 -0.09 -0.27 16 3 Si 0.91 21.77 29.56 -169.99 -5.03 16.75 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.23 -6.34 10.24 -15.06 -0.15 -6.50 16 8 H 0.08 2.06 7.84 -52.49 -0.41 1.64 16 9 N -0.60 -15.06 3.39 -169.93 -0.58 -15.64 16 10 C 0.17 3.99 5.43 -2.41 -0.01 3.98 16 11 C -0.15 -2.50 6.71 -24.46 -0.16 -2.67 16 12 C 0.13 2.22 3.23 -66.10 -0.21 2.00 16 13 H 0.10 1.73 7.70 -51.93 -0.40 1.33 16 14 N -0.71 -9.18 5.13 -53.38 -0.27 -9.45 16 15 C 0.59 8.13 7.78 -12.91 -0.10 8.03 16 16 O -0.51 -9.11 16.61 5.18 0.09 -9.03 16 17 C -0.01 -0.10 7.06 -81.93 -0.58 -0.68 16 18 C -0.09 -0.98 10.64 -39.10 -0.42 -1.39 16 19 C -0.10 -0.99 6.66 -39.90 -0.27 -1.26 16 20 Cl -0.03 -0.27 29.12 -51.86 -1.51 -1.78 16 21 C 0.10 0.87 7.75 -16.76 -0.13 0.74 16 22 Cl 0.00 0.02 29.13 -51.86 -1.51 -1.49 16 23 N -0.52 -4.36 6.01 -6.51 -0.04 -4.40 16 24 H 0.43 2.40 8.19 -40.82 -0.33 2.06 16 25 C 0.13 2.68 6.99 -3.07 -0.02 2.66 16 26 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 28 H 0.07 1.87 6.94 -51.93 -0.36 1.51 16 29 H 0.06 0.97 8.00 -51.93 -0.42 0.55 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.39 3.75 7.64 -40.82 -0.31 3.44 16 32 H 0.17 1.75 8.06 -52.48 -0.42 1.33 16 33 H 0.02 0.51 8.03 -51.93 -0.42 0.09 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 323.89 15.07 4.88 4.88 Total: -1.00 -31.62 323.89 -9.00 -40.62 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -3.47 Total: 0.73 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -2.15 Total: 4.64 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.30 Total: -55.31 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.75 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -3.02 Total: -3.27 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.62 -9.00 -40.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015453167.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.417 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds