Wall clock time and date at job start Tue Mar 31 2020 12:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99794 * 2 1 4 4 H 1.48496 * 109.47653 * 85.01383 * 3 2 1 5 5 H 1.48502 * 109.47192 * 205.01622 * 3 2 1 6 6 H 1.48505 * 109.47416 * 325.01055 * 3 2 1 7 7 C 1.38811 * 120.00055 * 180.27581 * 2 1 3 8 8 H 1.08001 * 119.99594 * 188.77506 * 7 2 1 9 9 N 1.36934 * 119.99892 * 8.76612 * 7 2 1 10 10 C 1.47427 * 125.64898 * 10.52013 * 9 7 2 11 11 C 1.55129 * 104.71984 * 155.81558 * 10 9 7 12 12 C 1.55156 * 101.49027 * 37.29120 * 11 10 9 13 13 H 1.09001 * 110.71513 * 82.69761 * 12 11 10 14 14 N 1.46496 * 110.72051 * 205.97051 * 12 11 10 15 15 C 1.34772 * 120.00125 * 199.98042 * 14 12 11 16 16 O 1.21715 * 119.99774 * 359.97438 * 15 14 12 17 17 C 1.46549 * 120.00156 * 180.02562 * 15 14 12 18 18 C 1.37956 * 126.22225 * 179.68968 * 17 15 14 19 19 C 1.39789 * 107.12922 * 179.84252 * 18 17 15 20 20 Cl 1.73596 * 126.06480 * 180.14980 * 19 18 17 21 21 C 1.35719 * 107.87339 * 0.41948 * 19 18 17 22 22 Cl 1.73601 * 125.58565 * 179.72238 * 21 19 18 23 23 N 1.35665 * 108.83435 * 359.73542 * 21 19 18 24 24 H 0.96997 * 125.70115 * 179.97438 * 23 21 19 25 25 C 1.47019 * 125.64794 * 190.81940 * 9 7 2 26 26 H 0.96993 * 119.99995 * 359.97438 * 1 2 3 27 27 H 1.09002 * 110.36325 * 274.74155 * 10 9 7 28 28 H 1.08999 * 110.36530 * 37.06435 * 10 9 7 29 29 H 1.09007 * 111.18627 * 279.18401 * 11 10 9 30 30 H 1.09001 * 110.93761 * 155.29183 * 11 10 9 31 31 H 0.97006 * 120.00298 * 19.97492 * 14 12 11 32 32 H 1.08006 * 126.43494 * 359.95353 * 18 17 15 33 33 H 1.09003 * 109.88459 * 300.44626 * 25 9 7 34 34 H 1.09003 * 109.88452 * 61.60765 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1074 1.3947 5 1 3.5964 1.4121 -0.5921 6 1 1.5043 2.6200 -0.8028 7 6 2.0103 -1.2021 -0.0058 8 1 3.0808 -1.2082 0.1369 9 7 1.3376 -2.3802 -0.1922 10 6 -0.0697 -2.5089 -0.6121 11 6 -0.1599 -3.9142 -1.2629 12 6 0.7866 -4.7385 -0.3507 13 1 0.2660 -5.0663 0.5491 14 7 1.3394 -5.8839 -1.0778 15 6 1.8442 -6.9331 -0.3990 16 8 1.8411 -6.9288 0.8182 17 6 2.3977 -8.0786 -1.1263 18 6 2.9497 -9.2113 -0.5647 19 6 3.3451 -10.0419 -1.6172 20 17 4.0960 -11.5995 -1.4633 21 6 3.0433 -9.4120 -2.7809 22 17 3.3457 -10.0329 -4.3736 23 7 2.4669 -8.2175 -2.4956 24 1 2.1558 -7.5693 -3.1466 25 6 1.8974 -3.7261 -0.0007 26 1 -0.4850 0.8400 0.0004 27 1 -0.7308 -2.4453 0.2522 28 1 -0.3204 -1.7373 -1.3401 29 1 0.2045 -3.8969 -2.2900 30 1 -1.1787 -4.2993 -1.2185 31 1 1.3422 -5.8872 -2.0478 32 1 3.0547 -9.4184 0.4901 33 1 2.7518 -3.8698 -0.6622 34 1 2.2037 -3.8560 1.0373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015453167.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:26 Heat of formation + Delta-G solvation = 3.549928 kcal Electronic energy + Delta-G solvation = -21202.323322 eV Core-core repulsion = 17608.627321 eV Total energy + Delta-G solvation = -3593.696001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.66960 -40.64655 -38.85164 -37.90856 -37.51885 -35.76132 -33.89049 -32.31580 -31.22777 -30.37547 -28.72251 -26.52931 -24.27265 -22.35387 -22.25198 -21.63685 -21.40829 -20.27481 -18.89812 -17.68055 -17.29025 -16.71855 -16.65700 -16.14331 -15.89679 -15.50743 -15.35569 -15.02020 -14.60665 -14.44150 -14.19385 -13.86030 -13.55276 -13.00449 -12.98167 -12.85665 -12.74728 -12.56553 -12.48695 -12.26631 -12.02394 -11.98353 -11.85472 -11.57413 -11.34958 -10.72100 -10.33761 -10.15820 -9.40443 -8.89752 -7.91012 -5.26660 0.00815 0.30936 1.01984 1.04781 1.46370 1.47179 1.56984 1.81662 2.10020 2.17939 2.48967 3.28995 3.52789 3.68683 3.71666 3.79457 3.99372 4.19220 4.23210 4.45926 4.54570 4.69742 4.87180 4.93748 4.99582 5.02856 5.21082 5.41245 5.42909 5.55968 5.69987 5.87111 6.18006 6.37670 6.99030 7.06330 7.72034 8.37181 9.20591 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.026461 B = 0.002534 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.923756 B =11048.527630 C =11252.217314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.059 4.059 3 Si 0.978 3.022 4 H -0.289 1.289 5 H -0.269 1.269 6 H -0.289 1.289 7 C -0.248 4.248 8 H 0.075 0.925 9 N -0.622 5.622 10 C 0.175 3.825 11 C -0.127 4.127 12 C 0.151 3.849 13 H 0.087 0.913 14 N -0.698 5.698 15 C 0.592 3.408 16 O -0.558 6.558 17 C -0.019 4.019 18 C -0.092 4.092 19 C -0.112 4.112 20 Cl -0.025 7.025 21 C 0.108 3.892 22 Cl 0.021 6.979 23 N -0.505 5.505 24 H 0.442 0.558 25 C 0.127 3.873 26 H 0.250 0.750 27 H 0.000 1.000 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.412 0.588 32 H 0.167 0.833 33 H 0.032 0.968 34 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.996 -22.591 -11.011 25.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.253 4.253 3 Si 0.806 3.194 4 H -0.216 1.216 5 H -0.194 1.194 6 H -0.215 1.215 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.349 5.349 10 C 0.050 3.950 11 C -0.165 4.165 12 C 0.046 3.954 13 H 0.105 0.895 14 N -0.349 5.349 15 C 0.379 3.621 16 O -0.436 6.436 17 C -0.133 4.133 18 C -0.118 4.118 19 C -0.146 4.146 20 Cl 0.004 6.996 21 C -0.038 4.038 22 Cl 0.049 6.951 23 N -0.107 5.107 24 H 0.285 0.715 25 C 0.000 4.000 26 H 0.060 0.940 27 H 0.019 0.981 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.249 0.751 32 H 0.185 0.815 33 H 0.050 0.950 34 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 3.965 -22.406 -10.365 25.004 hybrid contribution 0.325 1.271 -0.446 1.386 sum 4.290 -21.135 -10.811 24.124 Atomic orbital electron populations 1.70120 1.06253 1.25707 1.57281 1.25650 0.96562 1.01018 1.02047 0.85084 0.77888 0.79140 0.77310 1.21557 1.19407 1.21504 1.19361 0.91387 0.84092 1.42905 0.90758 1.44733 1.10163 1.00508 1.79512 1.21299 0.84551 0.93447 0.95727 1.23177 0.99705 0.94721 0.98932 1.21708 0.93519 0.84184 0.96036 0.89534 1.45660 1.61401 1.17313 1.10512 1.17050 0.77306 0.81207 0.86519 1.90893 1.57958 1.80632 1.14120 1.20027 1.12832 0.98765 0.81674 1.21279 0.99478 0.91067 1.00012 1.19657 1.10606 0.92369 0.91993 1.98353 1.80201 1.23118 1.97917 1.20647 1.05620 0.88915 0.88577 1.98447 1.93965 1.84322 1.18356 1.41793 1.46519 1.15566 1.06866 0.71482 1.21706 0.95742 0.85426 0.97127 0.94041 0.98148 0.93666 0.89210 0.88329 0.75063 0.81509 0.94993 0.97560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.64 10.67 21.65 0.23 -55.41 16 2 C -0.06 -3.32 5.41 84.86 0.46 -2.86 16 3 Si 0.98 45.18 29.56 68.60 2.03 47.21 16 4 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.25 -13.96 10.24 84.03 0.86 -13.10 16 8 H 0.07 4.07 7.84 -2.91 -0.02 4.05 16 9 N -0.62 -31.65 3.39 -691.55 -2.35 -33.99 16 10 C 0.18 8.10 5.43 86.93 0.47 8.57 16 11 C -0.13 -3.92 6.71 32.06 0.21 -3.71 16 12 C 0.15 4.87 3.23 46.18 0.15 5.02 16 13 H 0.09 3.05 7.70 -2.39 -0.02 3.03 16 14 N -0.70 -16.41 5.13 -441.00 -2.26 -18.67 16 15 C 0.59 15.60 7.78 86.41 0.67 16.28 16 16 O -0.56 -19.70 16.61 -4.40 -0.07 -19.78 16 17 C -0.02 -0.38 7.06 40.31 0.28 -0.10 16 18 C -0.09 -1.89 10.64 22.58 0.24 -1.65 16 19 C -0.11 -2.05 6.66 22.06 0.15 -1.90 16 20 Cl -0.02 -0.42 29.12 -2.72 -0.08 -0.50 16 21 C 0.11 1.68 7.75 83.52 0.65 2.33 16 22 Cl 0.02 0.26 29.13 -2.72 -0.08 0.18 16 23 N -0.50 -7.02 6.01 -174.51 -1.05 -8.07 16 24 H 0.44 3.38 8.19 -92.71 -0.76 2.63 16 25 C 0.13 5.31 6.99 86.73 0.61 5.92 16 26 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 27 H 0.00 0.02 8.07 -2.39 -0.02 0.00 16 28 H 0.04 2.33 6.94 -2.39 -0.02 2.31 16 29 H 0.09 2.37 8.00 -2.38 -0.02 2.35 16 30 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.41 6.44 7.64 -92.70 -0.71 5.73 16 32 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.03 1.30 8.03 -2.39 -0.02 1.28 16 34 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -70.22 323.89 0.83 -69.39 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -0.30 Total: 4.83 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 4.75 Total: 14.81 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -5.42 Total: -116.15 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.07 Total: -19.78 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.16 Total: -0.32 kcal Total: -70.22 0.83 -69.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015453167.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.941 kcal (2) G-P(sol) polarization free energy of solvation -70.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds