Wall clock time and date at job start Tue Mar 31 2020 12:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00070 * 2 1 4 4 H 1.48503 * 109.46977 * 239.99976 * 3 2 1 5 5 H 1.48497 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46946 * 119.99939 * 3 2 1 7 7 C 1.38815 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99806 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00358 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64483 * 359.95842 * 9 7 2 11 11 C 1.54914 * 104.82992 * 204.16378 * 10 9 7 12 12 C 1.55405 * 101.66697 * 323.07703 * 11 10 9 13 13 H 1.09000 * 110.69068 * 277.04987 * 12 11 10 14 14 N 1.46495 * 110.85076 * 153.69955 * 12 11 10 15 15 C 1.34776 * 119.99803 * 160.08868 * 14 12 11 16 16 O 1.21716 * 119.99872 * 359.97438 * 15 14 12 17 17 C 1.46546 * 120.00004 * 180.02562 * 15 14 12 18 18 C 1.37959 * 126.22054 * 179.97438 * 17 15 14 19 19 C 1.39790 * 107.12447 * 179.97438 * 18 17 15 20 20 Cl 1.73605 * 126.05966 * 180.02562 * 19 18 17 21 21 C 1.35715 * 107.88039 * 359.97438 * 19 18 17 22 22 Cl 1.73598 * 125.58984 * 180.02562 * 21 19 18 23 23 N 1.35669 * 108.82795 * 359.76980 * 21 19 18 24 24 H 0.97000 * 125.69407 * 180.23536 * 23 21 19 25 25 C 1.47018 * 125.64999 * 180.02562 * 9 7 2 26 26 H 0.96996 * 119.99954 * 0.02562 * 1 2 3 27 27 H 1.08999 * 110.36956 * 323.00754 * 10 9 7 28 28 H 1.09003 * 110.36599 * 85.32658 * 10 9 7 29 29 H 1.09000 * 111.00339 * 81.07133 * 11 10 9 30 30 H 1.09001 * 111.00161 * 204.91727 * 11 10 9 31 31 H 0.96997 * 120.00433 * 340.08762 * 14 12 11 32 32 H 1.07993 * 126.43966 * 359.92208 * 18 17 15 33 33 H 1.09002 * 109.88241 * 298.32312 * 25 9 7 34 34 H 1.09000 * 109.88049 * 59.33441 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5331 0.0009 11 6 -0.4016 -3.9319 0.6138 12 6 0.7807 -4.7551 0.0310 13 1 0.5484 -5.1034 -0.9754 14 7 1.1138 -5.8812 0.9069 15 6 1.8081 -6.9296 0.4219 16 8 2.1580 -6.9410 -0.7438 17 6 2.1408 -8.0564 1.2979 18 6 2.8416 -9.1890 0.9385 19 6 2.9301 -9.9965 2.0762 20 17 3.7140 -11.5425 2.1735 21 6 2.2957 -9.3572 3.0913 22 17 2.1307 -9.9524 4.7137 23 7 1.8163 -8.1741 2.6320 24 1 1.3249 -7.5213 3.1547 25 6 1.9317 -3.7275 0.0016 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5993 -1.7584 0.6159 28 1 -0.5275 -2.4875 -1.0175 29 1 -0.3519 -3.8970 1.7021 30 1 -1.3590 -4.3326 0.2807 31 1 0.8347 -5.8722 1.8358 32 1 3.2452 -9.4107 -0.0383 33 1 2.5283 -3.8651 -0.9002 34 1 2.5602 -3.8492 0.8838 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015453168.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:30 Heat of formation + Delta-G solvation = 26.903832 kcal Electronic energy + Delta-G solvation = -21210.719241 eV Core-core repulsion = 17618.035941 eV Total energy + Delta-G solvation = -3592.683300 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.83865 -39.42557 -37.34617 -37.14317 -36.77141 -34.27321 -32.13221 -31.45105 -29.79314 -29.06082 -27.11511 -24.72021 -23.14804 -21.34055 -20.79519 -20.62819 -19.93358 -19.21033 -17.05625 -16.57588 -16.04694 -15.72289 -15.15222 -14.76501 -14.65463 -14.26210 -14.13165 -13.85761 -13.63109 -13.12871 -12.49672 -12.28404 -12.22507 -12.01324 -11.82610 -11.70808 -11.23704 -11.22313 -11.04035 -10.82659 -10.65753 -10.20202 -10.10423 -9.91024 -9.65403 -9.40151 -9.04012 -8.71425 -8.59161 -6.91099 -5.71898 -3.13661 0.87844 1.05178 1.76139 1.87456 2.76634 3.08803 3.14666 3.37836 3.42198 3.43458 4.42073 4.46158 4.56227 4.99750 5.19378 5.28020 5.35595 5.44034 5.66794 5.68765 5.82025 6.02570 6.04900 6.23855 6.35620 6.38146 6.51698 6.66380 6.85446 7.38626 7.41042 7.56241 7.75534 8.06020 8.27894 9.15506 9.75896 10.39181 11.32428 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.026031 B = 0.002545 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.371079 B =11000.290937 C =11209.292485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 0.917 3.083 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.153 3.847 11 C -0.149 4.149 12 C 0.131 3.869 13 H 0.096 0.904 14 N -0.712 5.712 15 C 0.586 3.414 16 O -0.516 6.516 17 C -0.009 4.009 18 C -0.089 4.089 19 C -0.098 4.098 20 Cl -0.029 7.029 21 C 0.096 3.904 22 Cl 0.003 6.997 23 N -0.522 5.522 24 H 0.428 0.572 25 C 0.129 3.871 26 H 0.253 0.747 27 H 0.112 0.888 28 H 0.017 0.983 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.392 0.608 32 H 0.169 0.831 33 H 0.030 0.970 34 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.141 -21.065 8.797 22.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.747 3.253 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.028 3.972 11 C -0.188 4.188 12 C 0.027 3.973 13 H 0.114 0.886 14 N -0.362 5.362 15 C 0.372 3.628 16 O -0.391 6.391 17 C -0.123 4.123 18 C -0.116 4.116 19 C -0.133 4.133 20 Cl -0.001 7.001 21 C -0.049 4.049 22 Cl 0.031 6.969 23 N -0.123 5.123 24 H 0.268 0.732 25 C 0.002 3.998 26 H 0.064 0.936 27 H 0.129 0.871 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.226 0.774 32 H 0.186 0.814 33 H 0.048 0.952 34 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.312 -20.856 8.133 22.424 hybrid contribution 0.167 0.907 0.999 1.359 sum 1.479 -19.949 9.131 21.989 Atomic orbital electron populations 1.69743 1.04904 1.25031 1.57609 1.24787 0.95759 0.97755 1.02290 0.86120 0.78401 0.82830 0.77965 1.21116 1.21519 1.21147 1.19044 0.90554 0.82304 1.43222 0.90467 1.44432 1.01829 0.99617 1.87086 1.21956 0.84928 0.91713 0.98606 1.23391 0.95883 0.99232 1.00338 1.22239 0.96486 0.84485 0.94076 0.88569 1.45977 1.56310 1.19667 1.14252 1.16827 0.78670 0.80749 0.86579 1.90903 1.53000 1.79235 1.15922 1.20625 1.09113 0.99786 0.82772 1.21163 1.00344 0.91199 0.98846 1.19605 1.07484 0.92317 0.93899 1.98352 1.78757 1.24647 1.98309 1.20564 1.06159 0.89616 0.88513 1.98430 1.96775 1.85576 1.16086 1.41918 1.44465 1.16054 1.09859 0.73190 1.21591 0.93780 0.85851 0.98624 0.93583 0.87088 0.96486 0.91746 0.91529 0.77425 0.81370 0.95234 0.95746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.26 10.09 55.49 0.56 -25.70 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.92 21.79 29.55 -169.99 -5.02 16.77 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.22 -6.15 10.27 -15.06 -0.15 -6.31 16 8 H 0.08 2.08 7.83 -52.48 -0.41 1.66 16 9 N -0.60 -15.14 3.39 -170.07 -0.58 -15.72 16 10 C 0.15 3.53 5.89 -2.53 -0.01 3.51 16 11 C -0.15 -2.52 6.71 -24.44 -0.16 -2.68 16 12 C 0.13 2.21 3.25 -65.96 -0.21 2.00 16 13 H 0.10 1.72 7.70 -51.93 -0.40 1.32 16 14 N -0.71 -9.30 5.13 -53.25 -0.27 -9.58 16 15 C 0.59 8.19 7.78 -12.91 -0.10 8.09 16 16 O -0.52 -9.14 16.61 5.17 0.09 -9.06 16 17 C -0.01 -0.10 7.06 -81.94 -0.58 -0.68 16 18 C -0.09 -0.98 10.64 -39.10 -0.42 -1.40 16 19 C -0.10 -1.00 6.66 -39.90 -0.27 -1.27 16 20 Cl -0.03 -0.28 29.12 -51.86 -1.51 -1.79 16 21 C 0.10 0.88 7.75 -16.76 -0.13 0.75 16 22 Cl 0.00 0.02 29.13 -51.86 -1.51 -1.49 16 23 N -0.52 -4.43 6.01 -6.51 -0.04 -4.47 16 24 H 0.43 2.48 8.19 -40.82 -0.33 2.14 16 25 C 0.13 2.70 6.98 -3.07 -0.02 2.68 16 26 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 27 H 0.11 2.87 5.87 -51.93 -0.30 2.56 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 1.01 8.01 -51.93 -0.42 0.59 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.39 3.86 7.65 -40.82 -0.31 3.55 16 32 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.02 0.51 8.03 -51.93 -0.42 0.09 16 LS Contribution 322.89 15.07 4.87 4.87 Total: -1.00 -31.24 322.89 -9.00 -40.24 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -3.42 Total: 1.63 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -2.15 Total: 4.30 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.33 Total: -55.47 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -3.02 Total: -3.27 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.24 -9.00 -40.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015453168.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.143 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds