Wall clock time and date at job start Tue Mar 31 2020 12:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00070 * 2 1 4 4 H 1.48503 * 109.46977 * 239.99976 * 3 2 1 5 5 H 1.48497 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46946 * 119.99939 * 3 2 1 7 7 C 1.38815 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99806 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00358 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64483 * 359.95842 * 9 7 2 11 11 C 1.54914 * 104.82992 * 204.16378 * 10 9 7 12 12 C 1.55405 * 101.66697 * 323.07703 * 11 10 9 13 13 H 1.09000 * 110.69068 * 277.04987 * 12 11 10 14 14 N 1.46495 * 110.85076 * 153.69955 * 12 11 10 15 15 C 1.34776 * 119.99803 * 160.08868 * 14 12 11 16 16 O 1.21716 * 119.99872 * 359.97438 * 15 14 12 17 17 C 1.46546 * 120.00004 * 180.02562 * 15 14 12 18 18 C 1.37959 * 126.22054 * 179.97438 * 17 15 14 19 19 C 1.39790 * 107.12447 * 179.97438 * 18 17 15 20 20 Cl 1.73605 * 126.05966 * 180.02562 * 19 18 17 21 21 C 1.35715 * 107.88039 * 359.97438 * 19 18 17 22 22 Cl 1.73598 * 125.58984 * 180.02562 * 21 19 18 23 23 N 1.35669 * 108.82795 * 359.76980 * 21 19 18 24 24 H 0.97000 * 125.69407 * 180.23536 * 23 21 19 25 25 C 1.47018 * 125.64999 * 180.02562 * 9 7 2 26 26 H 0.96996 * 119.99954 * 0.02562 * 1 2 3 27 27 H 1.08999 * 110.36956 * 323.00754 * 10 9 7 28 28 H 1.09003 * 110.36599 * 85.32658 * 10 9 7 29 29 H 1.09000 * 111.00339 * 81.07133 * 11 10 9 30 30 H 1.09001 * 111.00161 * 204.91727 * 11 10 9 31 31 H 0.96997 * 120.00433 * 340.08762 * 14 12 11 32 32 H 1.07993 * 126.43966 * 359.92208 * 18 17 15 33 33 H 1.09002 * 109.88241 * 298.32312 * 25 9 7 34 34 H 1.09000 * 109.88049 * 59.33441 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5331 0.0009 11 6 -0.4016 -3.9319 0.6138 12 6 0.7807 -4.7551 0.0310 13 1 0.5484 -5.1034 -0.9754 14 7 1.1138 -5.8812 0.9069 15 6 1.8081 -6.9296 0.4219 16 8 2.1580 -6.9410 -0.7438 17 6 2.1408 -8.0564 1.2979 18 6 2.8416 -9.1890 0.9385 19 6 2.9301 -9.9965 2.0762 20 17 3.7140 -11.5425 2.1735 21 6 2.2957 -9.3572 3.0913 22 17 2.1307 -9.9524 4.7137 23 7 1.8163 -8.1741 2.6320 24 1 1.3249 -7.5213 3.1547 25 6 1.9317 -3.7275 0.0016 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5993 -1.7584 0.6159 28 1 -0.5275 -2.4875 -1.0175 29 1 -0.3519 -3.8970 1.7021 30 1 -1.3590 -4.3326 0.2807 31 1 0.8347 -5.8722 1.8358 32 1 3.2452 -9.4107 -0.0383 33 1 2.5283 -3.8651 -0.9002 34 1 2.5602 -3.8492 0.8838 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015453168.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:29 Heat of formation + Delta-G solvation = 6.169059 kcal Electronic energy + Delta-G solvation = -21211.618368 eV Core-core repulsion = 17618.035941 eV Total energy + Delta-G solvation = -3593.582427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.67300 -40.64205 -38.84446 -37.91189 -37.52131 -35.77203 -33.87620 -32.31697 -31.23425 -30.38077 -28.68583 -26.54355 -24.27939 -22.30830 -22.25452 -21.63995 -21.39966 -20.27702 -18.93866 -17.69446 -17.30452 -16.69059 -16.65598 -16.14842 -15.89166 -15.49262 -15.35879 -15.02249 -14.61440 -14.44439 -14.20343 -13.76623 -13.49870 -13.05605 -13.00214 -12.88753 -12.71544 -12.56248 -12.48947 -12.24855 -12.07039 -11.98468 -11.84614 -11.46370 -11.33242 -10.76446 -10.34348 -10.16231 -9.40853 -8.92794 -7.80163 -5.24950 0.00417 0.30684 1.01498 1.04505 1.46796 1.49611 1.55981 1.81586 2.09513 2.17513 2.49261 3.30199 3.52894 3.68883 3.72236 3.80544 4.00635 4.18969 4.23170 4.45596 4.55863 4.71012 4.86839 4.93114 4.99894 5.02863 5.20874 5.41304 5.44289 5.59307 5.76813 5.86478 6.28848 6.37182 6.98303 7.08976 7.74329 8.36602 9.21284 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.026031 B = 0.002545 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.371079 B =11000.290937 C =11209.292485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.980 3.020 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.245 4.245 8 H 0.075 0.925 9 N -0.623 5.623 10 C 0.151 3.849 11 C -0.126 4.126 12 C 0.150 3.850 13 H 0.088 0.912 14 N -0.698 5.698 15 C 0.592 3.408 16 O -0.558 6.558 17 C -0.019 4.019 18 C -0.091 4.091 19 C -0.111 4.111 20 Cl -0.024 7.024 21 C 0.108 3.892 22 Cl 0.020 6.980 23 N -0.505 5.505 24 H 0.442 0.558 25 C 0.127 3.873 26 H 0.250 0.750 27 H 0.083 0.917 28 H -0.010 1.010 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.412 0.588 32 H 0.168 0.832 33 H 0.009 0.991 34 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.088 -22.270 10.556 24.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.254 4.254 3 Si 0.808 3.192 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.374 4.374 8 H 0.093 0.907 9 N -0.350 5.350 10 C 0.026 3.974 11 C -0.165 4.165 12 C 0.045 3.955 13 H 0.106 0.894 14 N -0.349 5.349 15 C 0.379 3.621 16 O -0.436 6.436 17 C -0.133 4.133 18 C -0.118 4.118 19 C -0.146 4.146 20 Cl 0.004 6.996 21 C -0.038 4.038 22 Cl 0.049 6.951 23 N -0.108 5.108 24 H 0.285 0.715 25 C 0.000 4.000 26 H 0.059 0.941 27 H 0.101 0.899 28 H 0.008 0.992 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.249 0.751 32 H 0.185 0.815 33 H 0.027 0.973 34 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.245 -22.080 9.943 24.248 hybrid contribution 0.226 1.201 0.488 1.316 sum 1.471 -20.879 10.431 23.386 Atomic orbital electron populations 1.69983 1.06015 1.25324 1.58159 1.25589 0.96694 1.00778 1.02331 0.85136 0.77197 0.78761 0.78119 1.20844 1.21586 1.20146 1.19370 0.90911 0.83796 1.43279 0.90672 1.44710 1.02923 1.00416 1.86958 1.21794 0.83774 0.94784 0.97045 1.23183 0.97119 0.95012 1.01174 1.21777 0.94623 0.84534 0.94609 0.89421 1.45666 1.56132 1.18321 1.14792 1.17049 0.77687 0.81068 0.86266 1.90888 1.54623 1.80147 1.17926 1.20033 1.10641 0.99078 0.83587 1.21278 0.99945 0.91307 0.99257 1.19658 1.08220 0.92773 0.93956 1.98353 1.78701 1.24230 1.98281 1.20652 1.04801 0.89285 0.89036 1.98447 1.96613 1.85350 1.14684 1.41802 1.43910 1.16132 1.08942 0.71513 1.21688 0.95141 0.85454 0.97670 0.94068 0.89928 0.99165 0.89648 0.88471 0.75132 0.81461 0.97294 0.95306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.77 10.09 21.65 0.22 -54.55 16 2 C -0.06 -3.41 5.49 84.86 0.47 -2.94 16 3 Si 0.98 45.10 29.55 68.60 2.03 47.13 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.24 -13.73 10.27 84.03 0.86 -12.87 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.62 -31.79 3.39 -691.97 -2.35 -34.14 16 10 C 0.15 7.05 5.89 86.86 0.51 7.56 16 11 C -0.13 -4.01 6.71 32.08 0.22 -3.80 16 12 C 0.15 4.89 3.25 46.27 0.15 5.04 16 13 H 0.09 3.08 7.70 -2.39 -0.02 3.06 16 14 N -0.70 -16.77 5.13 -440.58 -2.26 -19.03 16 15 C 0.59 15.74 7.78 86.41 0.67 16.41 16 16 O -0.56 -19.68 16.61 -4.40 -0.07 -19.76 16 17 C -0.02 -0.39 7.06 40.31 0.28 -0.11 16 18 C -0.09 -1.89 10.64 22.58 0.24 -1.65 16 19 C -0.11 -2.06 6.66 22.06 0.15 -1.92 16 20 Cl -0.02 -0.42 29.12 -2.72 -0.08 -0.50 16 21 C 0.11 1.71 7.75 83.51 0.65 2.36 16 22 Cl 0.02 0.27 29.13 -2.72 -0.08 0.19 16 23 N -0.51 -7.22 6.01 -174.52 -1.05 -8.27 16 24 H 0.44 3.62 8.19 -92.71 -0.76 2.86 16 25 C 0.13 5.36 6.98 86.73 0.61 5.96 16 26 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 27 H 0.08 4.35 5.87 -2.39 -0.01 4.34 16 28 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 29 H 0.08 2.39 8.01 -2.39 -0.02 2.37 16 30 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.41 6.76 7.65 -92.71 -0.71 6.05 16 32 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 33 H 0.01 0.41 8.14 -2.39 -0.02 0.40 16 34 H 0.03 1.19 8.03 -2.39 -0.02 1.17 16 Total: -1.00 -68.83 322.89 0.87 -67.96 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -0.29 Total: 6.91 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 4.80 Total: 14.05 kcal Atomic # 7 Polarization: -110.55 SS G_CDS: -5.44 Total: -115.99 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.07 Total: -19.76 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.16 Total: -0.31 kcal Total: -68.83 0.87 -67.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015453168.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.132 kcal (2) G-P(sol) polarization free energy of solvation -68.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds