Wall clock time and date at job start Tue Mar 31 2020 12:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99960 * 2 1 4 4 H 1.48498 * 109.47021 * 270.00006 * 3 2 1 5 5 H 1.48498 * 109.47373 * 30.00071 * 3 2 1 6 6 H 1.48500 * 109.47403 * 150.00039 * 3 2 1 7 7 C 1.38812 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99851 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00226 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00087 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.92089 * 31.10468 * 10 9 7 12 12 C 1.55165 * 111.00397 * 155.00449 * 10 9 7 13 13 C 1.54327 * 102.94078 * 153.57581 * 12 10 9 14 14 N 1.47022 * 107.27336 * 337.80587 * 13 12 10 15 15 C 1.34777 * 125.64528 * 178.90269 * 14 13 12 16 16 O 1.21711 * 119.99491 * 180.02562 * 15 14 13 17 17 C 1.46539 * 120.00084 * 0.03135 * 15 14 13 18 18 C 1.37964 * 126.21970 * 179.97438 * 17 15 14 19 19 C 1.39790 * 107.12576 * 179.97438 * 18 17 15 20 20 Cl 1.73604 * 126.06056 * 180.02562 * 19 18 17 21 21 C 1.35723 * 107.87774 * 0.02562 * 19 18 17 22 22 Cl 1.73594 * 125.58512 * 179.97438 * 21 19 18 23 23 N 1.35662 * 108.82678 * 359.75145 * 21 19 18 24 24 H 0.97007 * 125.69054 * 180.26408 * 23 21 19 25 25 C 1.47425 * 108.70334 * 358.94217 * 14 13 12 26 26 H 0.97000 * 120.00028 * 359.97438 * 1 2 3 27 27 H 0.97002 * 119.99690 * 0.02562 * 9 7 2 28 28 H 1.08993 * 110.71917 * 35.21311 * 12 10 9 29 29 H 1.09002 * 110.71751 * 271.93883 * 12 10 9 30 30 H 1.08997 * 109.87800 * 97.22770 * 13 12 10 31 31 H 1.09000 * 109.87987 * 218.23010 * 13 12 10 32 32 H 1.08000 * 126.43508 * 359.97438 * 18 17 15 33 33 H 1.08997 * 110.36855 * 142.96531 * 25 14 13 34 34 H 1.08999 * 110.36490 * 265.17846 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5515 -3.2439 -0.5256 12 6 5.5269 -2.2962 -0.6127 13 6 6.3371 -3.4235 0.0616 14 7 5.6371 -3.7811 1.3040 15 6 6.0160 -4.7413 2.1706 16 8 5.3567 -4.9520 3.1717 17 6 7.2218 -5.5313 1.9075 18 6 7.7254 -6.5397 2.7031 19 6 8.8808 -7.0185 2.0786 20 17 9.9037 -8.2942 2.6619 21 6 9.0610 -6.3094 0.9355 22 17 10.3610 -6.5273 -0.1941 23 7 8.0560 -5.4058 0.8179 24 1 7.9443 -4.7752 0.0892 25 6 4.4515 -2.9161 1.4445 26 1 -0.4850 0.8400 0.0004 27 1 3.8646 -0.3621 -0.0004 28 1 5.9394 -1.3199 -0.3585 29 1 5.4989 -2.4348 -1.6935 30 1 6.3871 -4.2896 -0.5983 31 1 7.3436 -3.0719 0.2884 32 1 7.3059 -6.8927 3.6336 33 1 3.6213 -3.4771 1.8734 34 1 4.6846 -2.0509 2.0650 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019212603.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:12 Heat of formation + Delta-G solvation = 27.646602 kcal Electronic energy + Delta-G solvation = -21376.088361 eV Core-core repulsion = 17783.437270 eV Total energy + Delta-G solvation = -3592.651091 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.93652 -39.62401 -37.60226 -37.20624 -36.78096 -34.51569 -32.04238 -31.46970 -30.30229 -29.66085 -27.87830 -24.69174 -23.01604 -21.93648 -21.35009 -20.72911 -20.34724 -18.39319 -17.58844 -16.79584 -16.49933 -15.70039 -15.38318 -14.94325 -14.57007 -14.34714 -14.11005 -13.80419 -13.63060 -13.41838 -12.84455 -12.80543 -12.65057 -12.29077 -12.15600 -12.06225 -11.82415 -11.45232 -11.22456 -11.07998 -10.92683 -10.68965 -10.24561 -10.21465 -9.73541 -9.40956 -9.17173 -8.81085 -8.54221 -7.50670 -5.91558 -3.31177 0.87680 1.05150 1.76516 1.86176 2.65199 2.99995 3.08913 3.26535 3.28351 3.36155 4.20235 4.42343 4.45311 4.49616 4.70027 4.84820 4.92300 5.14259 5.27540 5.30388 5.47249 5.58889 5.65849 5.81716 5.90770 6.01043 6.02870 6.19803 6.34157 6.52813 6.58160 7.35988 7.80809 7.96860 8.26234 9.01715 9.73378 9.89852 11.25807 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.029875 B = 0.002752 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.028412 B =10172.736977 C =10817.307833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.258 4.258 8 H 0.093 0.907 9 N -0.733 5.733 10 C 0.178 3.822 11 H 0.080 0.920 12 C -0.142 4.142 13 C 0.089 3.911 14 N -0.612 5.612 15 C 0.599 3.401 16 O -0.518 6.518 17 C -0.006 4.006 18 C -0.090 4.090 19 C -0.097 4.097 20 Cl -0.030 7.030 21 C 0.092 3.908 22 Cl 0.002 6.998 23 N -0.525 5.525 24 H 0.428 0.572 25 C 0.082 3.918 26 H 0.262 0.738 27 H 0.365 0.635 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.169 0.831 33 H 0.082 0.918 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.740 -12.696 -0.726 26.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.185 4.185 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.388 4.388 8 H 0.111 0.889 9 N -0.374 5.374 10 C 0.066 3.934 11 H 0.097 0.903 12 C -0.181 4.181 13 C -0.035 4.035 14 N -0.346 5.346 15 C 0.387 3.613 16 O -0.393 6.393 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.132 4.132 20 Cl -0.001 7.001 21 C -0.053 4.053 22 Cl 0.031 6.969 23 N -0.131 5.131 24 H 0.274 0.726 25 C -0.043 4.043 26 H 0.072 0.928 27 H 0.198 0.802 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.186 0.814 33 H 0.100 0.900 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 22.239 -12.873 -0.328 25.698 hybrid contribution 0.905 1.413 -0.479 1.745 sum 23.144 -11.461 -0.807 25.839 Atomic orbital electron populations 1.69696 1.05163 1.26153 1.56215 1.24697 0.95244 0.97340 1.01253 0.86562 0.79235 0.84899 0.77833 1.20901 1.21524 1.20276 1.19072 0.80124 0.95004 1.44563 0.88877 1.42634 1.04266 1.01345 1.89145 1.21280 0.90161 0.90376 0.91569 0.90252 1.22982 0.96967 0.97433 1.00735 1.22213 0.96435 0.98662 0.86232 1.48442 1.28558 1.35340 1.22217 1.16458 0.82841 0.79004 0.82974 1.90900 1.53785 1.67893 1.26753 1.20537 0.96366 1.04229 0.90870 1.21150 0.93983 0.95671 1.00839 1.19616 0.98245 0.98939 0.96428 1.98350 1.66107 1.47859 1.87795 1.20623 0.91258 0.97990 0.95410 1.98425 1.43340 1.95860 1.59321 1.42661 1.19554 1.29813 1.21094 0.72594 1.23480 0.85826 0.93049 1.01896 0.92771 0.80166 0.90211 0.89418 0.91582 0.91741 0.81382 0.89966 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.97 13.97 55.49 0.78 -27.20 16 2 C 0.01 0.32 5.50 -17.43 -0.10 0.23 16 3 Si 0.88 20.81 27.73 -169.99 -4.71 16.09 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.05 6.52 56.52 0.37 -5.68 16 7 C -0.26 -6.80 10.44 -15.06 -0.16 -6.96 16 8 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 9 N -0.73 -15.57 5.05 -51.34 -0.26 -15.83 16 10 C 0.18 2.96 3.71 -65.78 -0.24 2.72 16 11 H 0.08 1.37 8.09 -51.93 -0.42 0.95 16 12 C -0.14 -1.67 6.60 -24.89 -0.16 -1.83 16 13 C 0.09 0.87 5.11 -3.06 -0.02 0.86 16 14 N -0.61 -8.35 3.33 -172.10 -0.57 -8.92 16 15 C 0.60 8.79 7.82 -12.91 -0.10 8.69 16 16 O -0.52 -9.44 17.14 5.18 0.09 -9.35 16 17 C -0.01 -0.07 6.89 -81.94 -0.56 -0.63 16 18 C -0.09 -1.02 10.64 -39.10 -0.42 -1.43 16 19 C -0.10 -1.01 6.66 -39.90 -0.27 -1.27 16 20 Cl -0.03 -0.28 29.12 -51.86 -1.51 -1.79 16 21 C 0.09 0.87 7.75 -16.76 -0.13 0.74 16 22 Cl 0.00 0.02 29.13 -51.86 -1.51 -1.49 16 23 N -0.53 -4.85 5.62 -6.51 -0.04 -4.88 16 24 H 0.43 3.07 4.92 -40.82 -0.20 2.86 16 25 C 0.08 1.36 6.60 -2.53 -0.02 1.34 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.36 7.55 5.63 -40.82 -0.23 7.32 16 28 H 0.08 0.92 8.00 -51.93 -0.42 0.50 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.52 7.07 -51.93 -0.37 0.15 16 31 H 0.06 0.50 7.25 -51.93 -0.38 0.13 16 32 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.08 1.52 8.04 -51.93 -0.42 1.11 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 319.24 15.07 4.81 4.81 Total: -1.00 -31.10 319.24 -8.39 -39.49 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -3.29 Total: 6.64 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -2.17 Total: 2.44 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.09 Total: -56.83 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.71 Total: 16.09 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -3.02 Total: -3.28 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.10 -8.39 -39.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019212603.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.132 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds