Wall clock time and date at job start Tue Mar 31 2020 12:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99960 * 2 1 4 4 H 1.48498 * 109.47021 * 270.00006 * 3 2 1 5 5 H 1.48498 * 109.47373 * 30.00071 * 3 2 1 6 6 H 1.48500 * 109.47403 * 150.00039 * 3 2 1 7 7 C 1.38812 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99851 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00226 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00087 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.92089 * 31.10468 * 10 9 7 12 12 C 1.55165 * 111.00397 * 155.00449 * 10 9 7 13 13 C 1.54327 * 102.94078 * 153.57581 * 12 10 9 14 14 N 1.47022 * 107.27336 * 337.80587 * 13 12 10 15 15 C 1.34777 * 125.64528 * 178.90269 * 14 13 12 16 16 O 1.21711 * 119.99491 * 180.02562 * 15 14 13 17 17 C 1.46539 * 120.00084 * 0.03135 * 15 14 13 18 18 C 1.37964 * 126.21970 * 179.97438 * 17 15 14 19 19 C 1.39790 * 107.12576 * 179.97438 * 18 17 15 20 20 Cl 1.73604 * 126.06056 * 180.02562 * 19 18 17 21 21 C 1.35723 * 107.87774 * 0.02562 * 19 18 17 22 22 Cl 1.73594 * 125.58512 * 179.97438 * 21 19 18 23 23 N 1.35662 * 108.82678 * 359.75145 * 21 19 18 24 24 H 0.97007 * 125.69054 * 180.26408 * 23 21 19 25 25 C 1.47425 * 108.70334 * 358.94217 * 14 13 12 26 26 H 0.97000 * 120.00028 * 359.97438 * 1 2 3 27 27 H 0.97002 * 119.99690 * 0.02562 * 9 7 2 28 28 H 1.08993 * 110.71917 * 35.21311 * 12 10 9 29 29 H 1.09002 * 110.71751 * 271.93883 * 12 10 9 30 30 H 1.08997 * 109.87800 * 97.22770 * 13 12 10 31 31 H 1.09000 * 109.87987 * 218.23010 * 13 12 10 32 32 H 1.08000 * 126.43508 * 359.97438 * 18 17 15 33 33 H 1.08997 * 110.36855 * 142.96531 * 25 14 13 34 34 H 1.08999 * 110.36490 * 265.17846 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5515 -3.2439 -0.5256 12 6 5.5269 -2.2962 -0.6127 13 6 6.3371 -3.4235 0.0616 14 7 5.6371 -3.7811 1.3040 15 6 6.0160 -4.7413 2.1706 16 8 5.3567 -4.9520 3.1717 17 6 7.2218 -5.5313 1.9075 18 6 7.7254 -6.5397 2.7031 19 6 8.8808 -7.0185 2.0786 20 17 9.9037 -8.2942 2.6619 21 6 9.0610 -6.3094 0.9355 22 17 10.3610 -6.5273 -0.1941 23 7 8.0560 -5.4058 0.8179 24 1 7.9443 -4.7752 0.0892 25 6 4.4515 -2.9161 1.4445 26 1 -0.4850 0.8400 0.0004 27 1 3.8646 -0.3621 -0.0004 28 1 5.9394 -1.3199 -0.3585 29 1 5.4989 -2.4348 -1.6935 30 1 6.3871 -4.2896 -0.5983 31 1 7.3436 -3.0719 0.2884 32 1 7.3059 -6.8927 3.6336 33 1 3.6213 -3.4771 1.8734 34 1 4.6846 -2.0509 2.0650 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019212603.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:11 Heat of formation + Delta-G solvation = 6.590690 kcal Electronic energy + Delta-G solvation = -21377.001414 eV Core-core repulsion = 17783.437270 eV Total energy + Delta-G solvation = -3593.564144 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.80127 -40.73973 -38.83713 -37.92754 -37.53730 -36.16324 -33.72121 -32.42926 -31.68651 -30.62072 -29.14122 -26.07056 -24.55197 -22.89641 -22.32092 -21.73305 -21.53738 -19.93497 -18.97200 -17.81523 -17.67009 -16.74190 -16.57933 -16.08766 -15.76229 -15.60991 -15.37332 -14.81838 -14.80175 -14.52815 -14.39921 -14.04304 -13.97612 -13.49076 -13.01466 -13.00531 -12.89574 -12.62910 -12.52040 -12.38955 -12.14430 -11.99131 -11.87320 -11.66113 -11.43435 -11.04937 -10.24717 -9.92873 -9.45170 -9.36245 -8.04429 -5.41438 -0.02487 0.28973 1.00495 1.01790 1.38863 1.43541 1.50086 1.62081 2.03566 2.14981 2.47697 3.21120 3.31615 3.36862 3.65885 3.70999 3.91113 3.99900 4.14581 4.22959 4.36783 4.40715 4.43589 4.75624 4.85401 4.92194 5.04494 5.12304 5.21654 5.27044 5.74306 5.81992 6.18724 6.27488 6.83334 7.04195 7.76281 7.95979 9.16597 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.029875 B = 0.002752 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.028412 B =10172.736977 C =10817.307833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.062 4.062 3 Si 0.958 3.042 4 H -0.273 1.273 5 H -0.301 1.301 6 H -0.247 1.247 7 C -0.240 4.240 8 H 0.056 0.944 9 N -0.735 5.735 10 C 0.168 3.832 11 H 0.067 0.933 12 C -0.127 4.127 13 C 0.085 3.915 14 N -0.610 5.610 15 C 0.599 3.401 16 O -0.566 6.566 17 C -0.018 4.018 18 C -0.091 4.091 19 C -0.110 4.110 20 Cl -0.023 7.023 21 C 0.106 3.894 22 Cl 0.023 6.977 23 N -0.510 5.510 24 H 0.439 0.561 25 C 0.091 3.909 26 H 0.259 0.741 27 H 0.372 0.628 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.167 0.833 33 H 0.048 0.952 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.699 -12.492 -2.143 29.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.254 4.254 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.229 1.229 6 H -0.171 1.171 7 C -0.371 4.371 8 H 0.074 0.926 9 N -0.377 5.377 10 C 0.058 3.942 11 H 0.086 0.914 12 C -0.166 4.166 13 C -0.037 4.037 14 N -0.343 5.343 15 C 0.389 3.611 16 O -0.445 6.445 17 C -0.132 4.132 18 C -0.117 4.117 19 C -0.144 4.144 20 Cl 0.006 6.994 21 C -0.040 4.040 22 Cl 0.052 6.948 23 N -0.117 5.117 24 H 0.287 0.713 25 C -0.035 4.035 26 H 0.067 0.933 27 H 0.206 0.794 28 H 0.109 0.891 29 H 0.130 0.870 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.185 0.815 33 H 0.067 0.933 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 26.287 -12.694 -1.788 29.246 hybrid contribution -0.261 1.166 -0.052 1.196 sum 26.025 -11.528 -1.840 28.524 Atomic orbital electron populations 1.69896 1.07405 1.26890 1.59011 1.25574 0.96097 1.01587 1.02095 0.85376 0.78678 0.79138 0.78322 1.19834 1.22854 1.17135 1.19009 0.82506 0.93464 1.42104 0.92645 1.42534 1.02441 1.03412 1.89315 1.21443 0.92734 0.88216 0.91840 0.91449 1.22920 0.92860 0.98769 1.02027 1.22520 0.97179 0.99343 0.84697 1.48400 1.27798 1.34656 1.23445 1.16769 0.83214 0.78863 0.82299 1.90871 1.55520 1.69324 1.28833 1.19939 0.96181 1.04730 0.92378 1.21264 0.94232 0.95406 1.00831 1.19655 0.98288 0.99585 0.96889 1.98353 1.65739 1.47527 1.87804 1.20718 0.91143 0.96930 0.95184 1.98445 1.42220 1.95712 1.58424 1.42506 1.18818 1.29789 1.20595 0.71283 1.23061 0.86285 0.92809 1.01344 0.93251 0.79383 0.89130 0.86950 0.88760 0.88337 0.81532 0.93337 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.63 13.97 21.65 0.30 -61.33 16 2 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 3 Si 0.96 42.88 27.73 68.60 1.90 44.78 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 6 H -0.25 -9.70 6.52 99.48 0.65 -9.05 16 7 C -0.24 -12.95 10.44 84.03 0.88 -12.08 16 8 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 9 N -0.73 -30.65 5.05 -316.36 -1.60 -32.25 16 10 C 0.17 5.43 3.71 46.39 0.17 5.60 16 11 H 0.07 2.34 8.09 -2.39 -0.02 2.32 16 12 C -0.13 -2.49 6.60 31.79 0.21 -2.28 16 13 C 0.08 1.34 5.11 86.73 0.44 1.78 16 14 N -0.61 -15.82 3.33 -816.63 -2.72 -18.54 16 15 C 0.60 17.22 7.82 86.41 0.68 17.90 16 16 O -0.57 -21.30 17.14 -4.38 -0.08 -21.37 16 17 C -0.02 -0.40 6.89 40.31 0.28 -0.12 16 18 C -0.09 -1.93 10.64 22.58 0.24 -1.69 16 19 C -0.11 -2.03 6.66 22.06 0.15 -1.88 16 20 Cl -0.02 -0.39 29.12 -2.72 -0.08 -0.47 16 21 C 0.11 1.67 7.75 83.52 0.65 2.32 16 22 Cl 0.02 0.29 29.13 -2.72 -0.08 0.21 16 23 N -0.51 -7.70 5.62 -174.52 -0.98 -8.68 16 24 H 0.44 4.30 4.92 -92.70 -0.46 3.85 16 25 C 0.09 3.02 6.60 86.86 0.57 3.59 16 26 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 27 H 0.37 14.48 5.63 -92.71 -0.52 13.95 16 28 H 0.09 1.66 8.00 -2.39 -0.02 1.64 16 29 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.09 1.02 7.07 -2.39 -0.02 1.01 16 31 H 0.10 0.99 7.25 -2.39 -0.02 0.98 16 32 H 0.17 3.50 8.06 -2.91 -0.02 3.47 16 33 H 0.05 1.91 8.04 -2.39 -0.02 1.89 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -71.47 319.24 1.54 -69.92 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.14 Total: 17.61 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 4.73 Total: 10.11 kcal Atomic # 7 Polarization: -115.80 SS G_CDS: -4.99 Total: -120.79 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.08 Total: -21.37 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.90 Total: 44.78 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -0.16 Total: -0.26 kcal Total: -71.47 1.54 -69.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019212603.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.513 kcal (2) G-P(sol) polarization free energy of solvation -71.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds