Wall clock time and date at job start Tue Mar 31 2020 12:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48493 * 109.47144 * 269.99568 * 3 2 1 5 5 H 1.48500 * 109.47140 * 30.00085 * 3 2 1 6 6 H 1.48502 * 109.46967 * 149.99516 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08998 * 112.85361 * 336.46850 * 10 9 7 12 12 C 1.53778 * 113.61557 * 107.77738 * 10 9 7 13 13 C 1.53780 * 87.08092 * 89.11527 * 12 10 9 14 14 H 1.09000 * 113.61877 * 270.88531 * 13 12 10 15 15 N 1.46501 * 113.61577 * 139.97897 * 13 12 10 16 16 C 1.34779 * 119.99785 * 107.50286 * 15 13 12 17 17 O 1.21708 * 119.99978 * 0.02562 * 16 15 13 18 18 C 1.46545 * 120.00280 * 180.02562 * 16 15 13 19 19 C 1.37960 * 126.22372 * 180.02562 * 18 16 15 20 20 C 1.39795 * 107.12706 * 180.02562 * 19 18 16 21 21 Cl 1.73595 * 126.06417 * 179.97438 * 20 19 18 22 22 C 1.35725 * 107.87501 * 359.97438 * 20 19 18 23 23 Cl 1.73600 * 125.58649 * 180.02562 * 22 20 19 24 24 N 1.35666 * 108.83022 * 359.73413 * 22 20 19 25 25 H 0.97003 * 125.69546 * 180.27270 * 24 22 20 26 26 C 1.53783 * 87.08328 * 25.43430 * 13 12 10 27 27 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 29 29 H 1.08998 * 113.61596 * 203.65958 * 12 10 9 30 30 H 1.08998 * 113.61243 * 334.56847 * 12 10 9 31 31 H 0.96996 * 120.00321 * 287.50637 * 15 13 12 32 32 H 1.07993 * 126.43545 * 359.97438 * 19 18 16 33 33 H 1.09000 * 113.61551 * 220.02042 * 26 13 12 34 34 H 1.09004 * 113.69000 * 89.12178 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 3.0656 -3.5621 -0.4098 12 6 1.9986 -4.4084 1.3352 13 6 0.7201 -5.0828 0.8105 14 1 -0.1907 -4.5288 1.0376 15 7 0.6233 -6.5040 1.1529 16 6 -0.2562 -6.9134 2.0884 17 8 -0.9705 -6.1025 2.6484 18 6 -0.3527 -8.3348 2.4314 19 6 -1.2031 -8.8927 3.3636 20 6 -0.9622 -10.2697 3.3685 21 17 -1.7653 -11.4441 4.3632 22 6 0.0110 -10.5257 2.4578 23 17 0.6640 -12.0916 2.0902 24 7 0.3852 -9.3581 1.8770 25 1 1.0615 -9.2597 1.1885 26 6 1.2602 -4.8260 -0.6063 27 1 -0.4849 0.8401 0.0004 28 1 0.3555 -2.3881 -0.0002 29 1 2.8273 -5.1004 1.4849 30 1 1.8285 -3.7581 2.1932 31 1 1.1923 -7.1503 0.7063 32 1 -1.9196 -8.3647 3.9751 33 1 0.4940 -4.5129 -1.3156 34 1 1.8872 -5.6315 -0.9887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020449716.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:25 Heat of formation + Delta-G solvation = 30.501431 kcal Electronic energy + Delta-G solvation = -20807.294240 eV Core-core repulsion = 17214.766944 eV Total energy + Delta-G solvation = -3592.527296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.88438 -39.68878 -37.99351 -37.25474 -36.80655 -34.25271 -32.84711 -31.53394 -30.04504 -29.25709 -25.21956 -24.88453 -23.50014 -22.33433 -21.20238 -20.73484 -19.74997 -18.49521 -17.44194 -16.61864 -16.09584 -15.81800 -15.18123 -14.96362 -14.56985 -14.41884 -14.03350 -13.96472 -13.66882 -13.15021 -12.80717 -12.36379 -12.31666 -12.14155 -12.07220 -11.88052 -11.75165 -11.25505 -10.92501 -10.85512 -10.39099 -10.25415 -10.19554 -9.84825 -9.73571 -9.44011 -9.01811 -8.92778 -8.62441 -7.06166 -5.83366 -3.13991 0.83175 0.99793 1.72518 1.83493 2.72034 3.07359 3.09708 3.40433 3.45604 3.47736 4.39561 4.51060 4.52235 4.90390 5.01687 5.12583 5.24300 5.28707 5.40256 5.75642 5.79525 5.89867 5.96939 6.00455 6.04615 6.24571 6.42759 6.52512 6.60876 6.67339 6.92162 7.38353 7.65201 8.03548 8.34586 9.45534 10.00658 10.34515 11.38675 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.034199 B = 0.002266 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.531821 B =12354.060136 C =12930.644565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.248 4.248 8 H 0.073 0.927 9 N -0.705 5.705 10 C 0.173 3.827 11 H 0.069 0.931 12 C -0.184 4.184 13 C 0.125 3.875 14 H 0.119 0.881 15 N -0.714 5.714 16 C 0.585 3.415 17 O -0.512 6.512 18 C -0.010 4.010 19 C -0.089 4.089 20 C -0.098 4.098 21 Cl -0.028 7.028 22 C 0.095 3.905 23 Cl 0.003 6.997 24 N -0.522 5.522 25 H 0.427 0.573 26 C -0.165 4.165 27 H 0.257 0.743 28 H 0.386 0.614 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.390 0.610 32 H 0.169 0.831 33 H 0.075 0.925 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.301 -26.281 3.366 26.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.379 4.379 8 H 0.091 0.909 9 N -0.343 5.343 10 C 0.059 3.941 11 H 0.087 0.913 12 C -0.226 4.226 13 C 0.022 3.978 14 H 0.136 0.864 15 N -0.363 5.363 16 C 0.370 3.630 17 O -0.387 6.387 18 C -0.124 4.124 19 C -0.115 4.115 20 C -0.133 4.133 21 Cl 0.000 7.000 22 C -0.049 4.049 23 Cl 0.031 6.969 24 N -0.124 5.124 25 H 0.267 0.733 26 C -0.205 4.205 27 H 0.067 0.933 28 H 0.221 0.779 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.223 0.777 32 H 0.187 0.813 33 H 0.094 0.906 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.976 -25.644 3.693 25.927 hybrid contribution 0.793 0.151 -0.488 0.943 sum 1.768 -25.493 3.205 25.754 Atomic orbital electron populations 1.69667 1.05162 1.25955 1.56863 1.24794 0.95549 0.97889 1.02449 0.86158 0.78670 0.83613 0.77521 1.21628 1.21680 1.20672 1.19256 0.91097 0.83853 1.43659 0.90913 1.42198 1.05781 0.99380 1.86969 1.20890 0.95310 0.85413 0.92452 0.91263 1.24342 0.95923 0.99760 1.02618 1.22779 1.00254 0.78469 0.96296 0.86352 1.46048 1.39503 1.10441 1.40328 1.16868 0.80904 0.84925 0.80332 1.90929 1.43132 1.52656 1.51943 1.20673 1.00588 0.88305 1.02815 1.21193 1.00411 0.90667 0.99264 1.19623 1.01076 0.91588 1.00971 1.98354 1.78047 1.56154 1.67426 1.20561 1.00959 0.82643 1.00778 1.98430 1.85233 1.19188 1.94041 1.41892 1.32903 1.04692 1.32889 0.73311 1.23927 1.00823 1.00069 0.95670 0.93296 0.77930 0.91276 0.90752 0.77709 0.81341 0.90634 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.25 -6.70 9.97 -15.06 -0.15 -6.85 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.70 -17.06 5.31 -52.64 -0.28 -17.34 16 10 C 0.17 3.18 4.56 -67.12 -0.31 2.87 16 11 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 12 C -0.18 -3.01 7.68 -25.92 -0.20 -3.21 16 13 C 0.13 1.90 4.12 -67.12 -0.28 1.62 16 14 H 0.12 2.20 7.46 -51.93 -0.39 1.81 16 15 N -0.71 -8.29 5.35 -54.36 -0.29 -8.58 16 16 C 0.58 7.86 7.78 -12.91 -0.10 7.76 16 17 O -0.51 -9.18 16.48 5.18 0.09 -9.10 16 18 C -0.01 -0.10 7.06 -81.93 -0.58 -0.68 16 19 C -0.09 -0.96 10.64 -39.10 -0.42 -1.38 16 20 C -0.10 -0.96 6.66 -39.90 -0.27 -1.22 16 21 Cl -0.03 -0.26 29.12 -51.86 -1.51 -1.77 16 22 C 0.09 0.81 7.75 -16.76 -0.13 0.68 16 23 Cl 0.00 0.02 29.13 -51.86 -1.51 -1.49 16 24 N -0.52 -3.98 6.01 -6.51 -0.04 -4.02 16 25 H 0.43 1.95 8.19 -40.82 -0.33 1.61 16 26 C -0.16 -2.38 7.58 -25.91 -0.20 -2.58 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 28 H 0.39 10.02 7.90 -40.82 -0.32 9.70 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 31 H 0.39 3.05 7.86 -40.82 -0.32 2.73 16 32 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.08 0.87 8.12 -51.93 -0.42 0.44 16 LS Contribution 330.86 15.07 4.99 4.99 Total: -1.00 -31.84 330.86 -9.02 -40.86 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -3.44 Total: 9.87 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.71 Total: -3.38 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.12 Total: -56.98 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -3.02 Total: -3.26 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.84 -9.02 -40.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020449716.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.359 kcal (2) G-P(sol) polarization free energy of solvation -31.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds