Wall clock time and date at job start Tue Mar 31 2020 12:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48493 * 109.47144 * 269.99568 * 3 2 1 5 5 H 1.48500 * 109.47140 * 30.00085 * 3 2 1 6 6 H 1.48502 * 109.46967 * 149.99516 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08998 * 112.85361 * 336.46850 * 10 9 7 12 12 C 1.53778 * 113.61557 * 107.77738 * 10 9 7 13 13 C 1.53780 * 87.08092 * 89.11527 * 12 10 9 14 14 H 1.09000 * 113.61877 * 270.88531 * 13 12 10 15 15 N 1.46501 * 113.61577 * 139.97897 * 13 12 10 16 16 C 1.34779 * 119.99785 * 107.50286 * 15 13 12 17 17 O 1.21708 * 119.99978 * 0.02562 * 16 15 13 18 18 C 1.46545 * 120.00280 * 180.02562 * 16 15 13 19 19 C 1.37960 * 126.22372 * 180.02562 * 18 16 15 20 20 C 1.39795 * 107.12706 * 180.02562 * 19 18 16 21 21 Cl 1.73595 * 126.06417 * 179.97438 * 20 19 18 22 22 C 1.35725 * 107.87501 * 359.97438 * 20 19 18 23 23 Cl 1.73600 * 125.58649 * 180.02562 * 22 20 19 24 24 N 1.35666 * 108.83022 * 359.73413 * 22 20 19 25 25 H 0.97003 * 125.69546 * 180.27270 * 24 22 20 26 26 C 1.53783 * 87.08328 * 25.43430 * 13 12 10 27 27 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 29 29 H 1.08998 * 113.61596 * 203.65958 * 12 10 9 30 30 H 1.08998 * 113.61243 * 334.56847 * 12 10 9 31 31 H 0.96996 * 120.00321 * 287.50637 * 15 13 12 32 32 H 1.07993 * 126.43545 * 359.97438 * 19 18 16 33 33 H 1.09000 * 113.61551 * 220.02042 * 26 13 12 34 34 H 1.09004 * 113.69000 * 89.12178 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 3.0656 -3.5621 -0.4098 12 6 1.9986 -4.4084 1.3352 13 6 0.7201 -5.0828 0.8105 14 1 -0.1907 -4.5288 1.0376 15 7 0.6233 -6.5040 1.1529 16 6 -0.2562 -6.9134 2.0884 17 8 -0.9705 -6.1025 2.6484 18 6 -0.3527 -8.3348 2.4314 19 6 -1.2031 -8.8927 3.3636 20 6 -0.9622 -10.2697 3.3685 21 17 -1.7653 -11.4441 4.3632 22 6 0.0110 -10.5257 2.4578 23 17 0.6640 -12.0916 2.0902 24 7 0.3852 -9.3581 1.8770 25 1 1.0615 -9.2597 1.1885 26 6 1.2602 -4.8260 -0.6063 27 1 -0.4849 0.8401 0.0004 28 1 0.3555 -2.3881 -0.0002 29 1 2.8273 -5.1004 1.4849 30 1 1.8285 -3.7581 2.1932 31 1 1.1923 -7.1503 0.7063 32 1 -1.9196 -8.3647 3.9751 33 1 0.4940 -4.5129 -1.3156 34 1 1.8872 -5.6315 -0.9887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020449716.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:24 Heat of formation + Delta-G solvation = 8.010511 kcal Electronic energy + Delta-G solvation = -20808.269520 eV Core-core repulsion = 17214.766944 eV Total energy + Delta-G solvation = -3593.502576 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.68209 -40.87156 -39.28668 -37.92013 -37.53216 -35.81194 -34.42977 -32.34771 -31.75482 -30.27651 -26.53955 -26.41294 -25.07182 -23.49373 -22.00880 -21.61652 -20.82562 -19.75274 -19.33634 -17.59676 -17.34774 -16.69063 -16.66403 -15.97027 -15.86333 -15.50723 -15.43924 -15.10784 -14.74210 -14.47256 -14.35866 -13.67677 -13.35026 -13.31215 -13.01256 -12.88873 -12.80587 -12.63290 -12.49518 -12.17196 -11.99770 -11.85888 -11.74957 -11.42715 -11.19940 -10.87442 -10.23828 -10.11800 -9.40905 -9.02699 -7.95563 -5.25118 -0.00428 0.29144 1.01286 1.03210 1.47994 1.49842 1.58150 1.86378 2.08938 2.20910 2.55672 3.36612 3.58647 3.63877 3.71798 3.81903 3.88519 4.18110 4.29718 4.34858 4.44174 4.75887 4.81596 4.96236 5.00288 5.10975 5.19034 5.22146 5.29622 5.50024 5.63757 5.87983 6.27034 6.41456 7.03701 7.31974 8.08518 8.28881 9.27897 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.034199 B = 0.002266 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.531821 B =12354.060136 C =12930.644565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.975 3.025 4 H -0.285 1.285 5 H -0.299 1.299 6 H -0.268 1.268 7 C -0.242 4.242 8 H 0.082 0.918 9 N -0.723 5.723 10 C 0.150 3.850 11 H 0.079 0.921 12 C -0.171 4.171 13 C 0.132 3.868 14 H 0.077 0.923 15 N -0.694 5.694 16 C 0.587 3.413 17 O -0.566 6.566 18 C -0.018 4.018 19 C -0.096 4.096 20 C -0.112 4.112 21 Cl -0.025 7.025 22 C 0.109 3.891 23 Cl 0.023 6.977 24 N -0.502 5.502 25 H 0.444 0.556 26 C -0.138 4.138 27 H 0.251 0.749 28 H 0.372 0.628 29 H 0.107 0.893 30 H 0.036 0.964 31 H 0.414 0.586 32 H 0.163 0.837 33 H 0.062 0.938 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.536 -28.821 2.553 29.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.804 3.196 4 H -0.212 1.212 5 H -0.226 1.226 6 H -0.192 1.192 7 C -0.374 4.374 8 H 0.100 0.900 9 N -0.361 5.361 10 C 0.039 3.961 11 H 0.097 0.903 12 C -0.213 4.213 13 C 0.027 3.973 14 H 0.095 0.905 15 N -0.345 5.345 16 C 0.374 3.626 17 O -0.445 6.445 18 C -0.132 4.132 19 C -0.123 4.123 20 C -0.147 4.147 21 Cl 0.003 6.997 22 C -0.037 4.037 23 Cl 0.051 6.949 24 N -0.105 5.105 25 H 0.287 0.713 26 C -0.177 4.177 27 H 0.059 0.941 28 H 0.204 0.796 29 H 0.126 0.874 30 H 0.055 0.945 31 H 0.251 0.749 32 H 0.181 0.819 33 H 0.081 0.919 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.306 -28.267 2.840 28.601 hybrid contribution 0.150 0.744 -0.211 0.788 sum 3.456 -27.523 2.629 27.863 Atomic orbital electron populations 1.69835 1.06777 1.26111 1.59451 1.25625 0.96360 1.01362 1.03729 0.85119 0.77678 0.79356 0.77478 1.21173 1.22635 1.19244 1.19703 0.91678 0.85013 1.41015 0.89973 1.42401 1.05360 1.00903 1.87447 1.21245 0.95851 0.84535 0.94450 0.90259 1.24199 0.97745 0.99569 0.99761 1.22320 0.98093 0.79928 0.96967 0.90511 1.45705 1.39451 1.09436 1.39888 1.17136 0.80126 0.85638 0.79694 1.90912 1.45259 1.54375 1.53910 1.20042 1.01969 0.87327 1.03890 1.21275 1.00375 0.91383 0.99264 1.19664 1.01906 0.91295 1.01830 1.98354 1.78092 1.55791 1.67424 1.20623 0.99954 0.83409 0.99675 1.98448 1.84833 1.17788 1.93820 1.41738 1.32505 1.03588 1.32634 0.71319 1.23766 1.00155 0.99262 0.94543 0.94060 0.79619 0.87433 0.94472 0.74884 0.81947 0.91876 0.85378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.07 13.06 21.65 0.28 -59.78 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 3 Si 0.97 45.93 29.55 68.60 2.03 47.95 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.24 -13.20 9.97 84.03 0.84 -12.36 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.72 -35.59 5.31 -320.45 -1.70 -37.29 16 10 C 0.15 5.33 4.56 45.52 0.21 5.53 16 11 H 0.08 2.66 8.10 -2.39 -0.02 2.64 16 12 C -0.17 -5.37 7.68 31.12 0.24 -5.13 16 13 C 0.13 3.88 4.12 45.52 0.19 4.07 16 14 H 0.08 2.99 7.46 -2.39 -0.02 2.97 16 15 N -0.69 -14.68 5.35 -444.11 -2.38 -17.05 16 16 C 0.59 15.42 7.78 86.41 0.67 16.09 16 17 O -0.57 -21.05 16.48 -4.38 -0.07 -21.12 16 18 C -0.02 -0.36 7.06 40.31 0.28 -0.07 16 19 C -0.10 -2.01 10.64 22.58 0.24 -1.77 16 20 C -0.11 -2.03 6.66 22.06 0.15 -1.88 16 21 Cl -0.03 -0.43 29.12 -2.72 -0.08 -0.51 16 22 C 0.11 1.59 7.75 83.52 0.65 2.23 16 23 Cl 0.02 0.26 29.13 -2.72 -0.08 0.18 16 24 N -0.50 -6.21 6.01 -174.51 -1.05 -7.26 16 25 H 0.44 2.27 8.19 -92.71 -0.76 1.51 16 26 C -0.14 -3.64 7.58 31.12 0.24 -3.41 16 27 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 28 H 0.37 20.12 7.90 -92.71 -0.73 19.39 16 29 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.41 4.78 7.86 -92.71 -0.73 4.05 16 32 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.13 2.15 8.12 -2.38 -0.02 2.13 16 Total: -1.00 -72.41 330.86 0.09 -72.32 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: -1.03 Total: 23.30 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 4.17 Total: -0.74 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -4.84 Total: -121.39 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.07 Total: -21.12 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.16 Total: -0.33 kcal Total: -72.41 0.09 -72.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020449716.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.335 kcal (2) G-P(sol) polarization free energy of solvation -72.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds