Wall clock time and date at job start Tue Mar 31 2020 12:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00237 * 2 1 4 4 H 1.48490 * 109.47375 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47176 * 300.00742 * 3 2 1 6 6 H 1.48504 * 109.46460 * 60.00352 * 3 2 1 7 7 C 1.38811 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00071 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00217 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00172 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.85139 * 336.19709 * 10 9 7 12 12 C 1.53953 * 113.73949 * 107.40399 * 10 9 7 13 13 C 1.53785 * 87.01765 * 139.94346 * 12 10 9 14 14 H 1.08997 * 113.61701 * 89.23012 * 13 12 10 15 15 N 1.46506 * 113.61303 * 220.04481 * 13 12 10 16 16 C 1.34773 * 119.99969 * 253.85863 * 15 13 12 17 17 O 1.21712 * 120.00235 * 0.02562 * 16 15 13 18 18 C 1.46546 * 119.99948 * 180.02562 * 16 15 13 19 19 C 1.37958 * 126.22269 * 180.02562 * 18 16 15 20 20 C 1.39793 * 107.12881 * 180.02562 * 19 18 16 21 21 Cl 1.73594 * 126.06461 * 180.02562 * 20 19 18 22 22 C 1.35726 * 107.87528 * 359.97438 * 20 19 18 23 23 Cl 1.73599 * 125.58498 * 179.97438 * 22 20 19 24 24 N 1.35668 * 108.82895 * 359.73216 * 22 20 19 25 25 H 0.97000 * 125.69251 * 180.26499 * 24 22 20 26 26 C 1.53782 * 87.17382 * 334.63572 * 13 12 10 27 27 H 0.97000 * 119.99763 * 359.97438 * 1 2 3 28 28 H 0.97002 * 119.99410 * 0.02562 * 9 7 2 29 29 H 1.08999 * 113.61718 * 25.42417 * 12 10 9 30 30 H 1.08994 * 113.66930 * 254.46671 * 12 10 9 31 31 H 0.97005 * 119.99811 * 74.13916 * 15 13 12 32 32 H 1.07997 * 126.43554 * 0.02562 * 19 18 16 33 33 H 1.08999 * 113.60954 * 139.93918 * 26 13 12 34 34 H 1.08995 * 113.61241 * 270.75565 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 3.0657 -3.5638 -0.4059 12 6 2.0030 -4.4043 1.3442 13 6 1.8498 -5.6981 0.5271 14 1 2.7996 -6.1644 0.2655 15 7 0.8904 -6.6447 1.1015 16 6 1.3304 -7.7599 1.7172 17 8 2.5248 -7.9804 1.7965 18 6 0.3708 -8.7071 2.2913 19 6 0.6774 -9.8819 2.9465 20 6 -0.5330 -10.4698 3.3255 21 17 -0.7171 -11.9678 4.1832 22 6 -1.5387 -9.6612 2.9049 23 17 -3.2341 -9.9548 3.1346 24 7 -1.0016 -8.5831 2.2803 25 1 -1.5005 -7.8492 1.8888 26 6 1.2602 -4.8288 -0.5961 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3880 -0.0005 29 1 1.1262 -4.1601 1.9439 30 1 2.9324 -4.3537 1.9114 31 1 -0.0616 -6.4708 1.0351 32 1 1.6665 -10.2737 3.1318 33 1 1.5908 -5.1203 -1.5929 34 1 0.1797 -4.7021 -0.5286 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022517587.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:28 Heat of formation + Delta-G solvation = 27.737260 kcal Electronic energy + Delta-G solvation = -20713.354581 eV Core-core repulsion = 17120.707421 eV Total energy + Delta-G solvation = -3592.647160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.89808 -39.71894 -37.97537 -37.23706 -36.81660 -34.31082 -32.94872 -31.54038 -30.18009 -29.32191 -25.25611 -24.93870 -23.55348 -21.95099 -21.10080 -20.69927 -19.99765 -18.86910 -17.21886 -16.67854 -16.27283 -15.84512 -15.20119 -14.85109 -14.63682 -14.51498 -14.23595 -13.94013 -13.69365 -13.12559 -12.99062 -12.38691 -12.32076 -12.12546 -12.04655 -11.85519 -11.36162 -11.26359 -11.01934 -10.81167 -10.59396 -10.47385 -10.19344 -10.03822 -9.71150 -9.45626 -9.07726 -8.95912 -8.63901 -7.06914 -5.87571 -3.16748 0.81124 1.01501 1.71722 1.81478 2.71084 3.02274 3.03859 3.37654 3.44185 3.45918 4.37790 4.47562 4.52658 4.85706 4.98804 5.09685 5.21557 5.24109 5.38444 5.73793 5.76336 5.80057 5.96545 5.99837 6.13224 6.18402 6.29209 6.47525 6.51422 6.58658 6.93432 7.33212 7.63035 7.95019 8.30796 9.42510 9.97929 10.32204 11.34832 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.025460 B = 0.002312 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.494228 B =12106.197283 C =12833.058022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.710 5.710 10 C 0.170 3.830 11 H 0.082 0.918 12 C -0.177 4.177 13 C 0.118 3.882 14 H 0.114 0.886 15 N -0.710 5.710 16 C 0.588 3.412 17 O -0.521 6.521 18 C -0.012 4.012 19 C -0.089 4.089 20 C -0.099 4.099 21 Cl -0.028 7.028 22 C 0.097 3.903 23 Cl 0.005 6.995 24 N -0.521 5.521 25 H 0.429 0.571 26 C -0.159 4.159 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.394 0.606 32 H 0.169 0.831 33 H 0.069 0.931 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.209 -22.950 5.097 24.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.347 5.347 10 C 0.057 3.943 11 H 0.100 0.900 12 C -0.219 4.219 13 C 0.014 3.986 14 H 0.132 0.868 15 N -0.359 5.359 16 C 0.374 3.626 17 O -0.396 6.396 18 C -0.126 4.126 19 C -0.115 4.115 20 C -0.134 4.134 21 Cl 0.000 7.000 22 C -0.047 4.047 23 Cl 0.033 6.967 24 N -0.123 5.123 25 H 0.269 0.731 26 C -0.199 4.199 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.227 0.773 32 H 0.186 0.814 33 H 0.088 0.912 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.422 -22.903 5.137 23.885 hybrid contribution -1.057 1.200 -0.010 1.599 sum -5.479 -21.703 5.126 22.964 Atomic orbital electron populations 1.69663 1.05185 1.25754 1.57483 1.24776 0.95551 0.97891 1.02633 0.86100 0.78880 0.83889 0.77218 1.20420 1.21795 1.21799 1.19359 0.91214 0.84074 1.42958 0.90858 1.42354 1.05667 0.99783 1.86930 1.21370 0.95564 0.84894 0.92489 0.90038 1.24387 1.02046 0.94821 1.00640 1.22620 0.93088 0.87218 0.95685 0.86829 1.45979 1.10290 1.22167 1.57499 1.16834 0.87137 0.80363 0.78301 1.90881 1.14805 1.75460 1.58490 1.20607 0.80884 1.00476 1.10677 1.21160 0.98095 0.93010 0.99218 1.19615 0.92540 0.93076 1.08167 1.98353 1.97642 1.29002 1.74990 1.20593 0.86649 0.91854 1.05622 1.98436 1.08232 1.94583 1.95445 1.41923 1.06522 1.18953 1.44871 0.73136 1.23880 1.01168 0.97314 0.97512 0.93457 0.78130 0.90226 0.91918 0.77284 0.81400 0.91228 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.27 13.06 55.49 0.72 -26.54 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.55 9.97 -15.06 -0.15 -6.70 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.71 -16.77 5.41 -52.55 -0.28 -17.05 16 10 C 0.17 3.10 4.48 -67.03 -0.30 2.80 16 11 H 0.08 1.49 8.10 -51.93 -0.42 1.07 16 12 C -0.18 -2.87 7.70 -25.83 -0.20 -3.07 16 13 C 0.12 1.59 4.22 -67.11 -0.28 1.31 16 14 H 0.11 1.60 7.49 -51.93 -0.39 1.21 16 15 N -0.71 -8.00 5.36 -54.36 -0.29 -8.29 16 16 C 0.59 7.36 7.78 -12.91 -0.10 7.26 16 17 O -0.52 -8.33 16.50 5.18 0.09 -8.24 16 18 C -0.01 -0.13 7.06 -81.93 -0.58 -0.71 16 19 C -0.09 -0.91 10.64 -39.10 -0.42 -1.32 16 20 C -0.10 -0.96 6.66 -39.90 -0.27 -1.23 16 21 Cl -0.03 -0.26 29.12 -51.86 -1.51 -1.77 16 22 C 0.10 0.85 7.75 -16.75 -0.13 0.72 16 23 Cl 0.00 0.04 29.13 -51.86 -1.51 -1.48 16 24 N -0.52 -4.15 6.01 -6.51 -0.04 -4.19 16 25 H 0.43 2.30 8.19 -40.82 -0.33 1.96 16 26 C -0.16 -2.26 7.58 -25.92 -0.20 -2.46 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.38 9.58 7.93 -40.82 -0.32 9.25 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.39 3.39 7.84 -40.82 -0.32 3.07 16 32 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 LS Contribution 331.03 15.07 4.99 4.99 Total: -1.00 -31.04 331.03 -9.02 -40.06 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -3.44 Total: 9.53 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -2.71 Total: -3.84 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 0.11 Total: -56.07 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.09 Total: -8.24 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -3.02 Total: -3.24 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.04 -9.02 -40.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022517587.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.800 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds