Wall clock time and date at job start Tue Mar 31 2020 12:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00237 * 2 1 4 4 H 1.48490 * 109.47375 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47176 * 300.00742 * 3 2 1 6 6 H 1.48504 * 109.46460 * 60.00352 * 3 2 1 7 7 C 1.38811 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00071 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00217 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00172 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.85139 * 336.19709 * 10 9 7 12 12 C 1.53953 * 113.73949 * 107.40399 * 10 9 7 13 13 C 1.53785 * 87.01765 * 139.94346 * 12 10 9 14 14 H 1.08997 * 113.61701 * 89.23012 * 13 12 10 15 15 N 1.46506 * 113.61303 * 220.04481 * 13 12 10 16 16 C 1.34773 * 119.99969 * 253.85863 * 15 13 12 17 17 O 1.21712 * 120.00235 * 0.02562 * 16 15 13 18 18 C 1.46546 * 119.99948 * 180.02562 * 16 15 13 19 19 C 1.37958 * 126.22269 * 180.02562 * 18 16 15 20 20 C 1.39793 * 107.12881 * 180.02562 * 19 18 16 21 21 Cl 1.73594 * 126.06461 * 180.02562 * 20 19 18 22 22 C 1.35726 * 107.87528 * 359.97438 * 20 19 18 23 23 Cl 1.73599 * 125.58498 * 179.97438 * 22 20 19 24 24 N 1.35668 * 108.82895 * 359.73216 * 22 20 19 25 25 H 0.97000 * 125.69251 * 180.26499 * 24 22 20 26 26 C 1.53782 * 87.17382 * 334.63572 * 13 12 10 27 27 H 0.97000 * 119.99763 * 359.97438 * 1 2 3 28 28 H 0.97002 * 119.99410 * 0.02562 * 9 7 2 29 29 H 1.08999 * 113.61718 * 25.42417 * 12 10 9 30 30 H 1.08994 * 113.66930 * 254.46671 * 12 10 9 31 31 H 0.97005 * 119.99811 * 74.13916 * 15 13 12 32 32 H 1.07997 * 126.43554 * 0.02562 * 19 18 16 33 33 H 1.08999 * 113.60954 * 139.93918 * 26 13 12 34 34 H 1.08995 * 113.61241 * 270.75565 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 3.0657 -3.5638 -0.4059 12 6 2.0030 -4.4043 1.3442 13 6 1.8498 -5.6981 0.5271 14 1 2.7996 -6.1644 0.2655 15 7 0.8904 -6.6447 1.1015 16 6 1.3304 -7.7599 1.7172 17 8 2.5248 -7.9804 1.7965 18 6 0.3708 -8.7071 2.2913 19 6 0.6774 -9.8819 2.9465 20 6 -0.5330 -10.4698 3.3255 21 17 -0.7171 -11.9678 4.1832 22 6 -1.5387 -9.6612 2.9049 23 17 -3.2341 -9.9548 3.1346 24 7 -1.0016 -8.5831 2.2803 25 1 -1.5005 -7.8492 1.8888 26 6 1.2602 -4.8288 -0.5961 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3880 -0.0005 29 1 1.1262 -4.1601 1.9439 30 1 2.9324 -4.3537 1.9114 31 1 -0.0616 -6.4708 1.0351 32 1 1.6665 -10.2737 3.1318 33 1 1.5908 -5.1203 -1.5929 34 1 0.1797 -4.7021 -0.5286 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022517587.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:27 Heat of formation + Delta-G solvation = 6.861433 kcal Electronic energy + Delta-G solvation = -20714.259825 eV Core-core repulsion = 17120.707421 eV Total energy + Delta-G solvation = -3593.552403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.67252 -40.82743 -39.21021 -37.91927 -37.52965 -35.85043 -34.43234 -32.34490 -31.87285 -30.27511 -26.60328 -26.46476 -24.90620 -23.09260 -21.92993 -21.59038 -21.11857 -20.02357 -19.09186 -17.69326 -17.40679 -16.68753 -16.39368 -16.12948 -15.91267 -15.51512 -15.39179 -15.04043 -14.84998 -14.48416 -14.35771 -13.67282 -13.31910 -13.16920 -13.01242 -12.91315 -12.84456 -12.50766 -12.23416 -12.20388 -12.07491 -11.98772 -11.79875 -11.55032 -11.23145 -10.87677 -10.23645 -10.12160 -9.40993 -8.98907 -7.96349 -5.23795 0.00249 0.30773 1.00874 1.03844 1.47823 1.48759 1.58199 1.87448 2.09563 2.19662 2.56598 3.35922 3.58031 3.66113 3.73350 3.82497 3.95941 4.16588 4.28156 4.30857 4.45163 4.70948 4.87661 4.89198 4.99346 5.07265 5.16448 5.22137 5.30194 5.50522 5.63327 5.85266 6.26747 6.39037 6.98856 7.33636 8.09294 8.31983 9.26906 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.025460 B = 0.002312 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.494228 B =12106.197283 C =12833.058022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.723 5.723 10 C 0.149 3.851 11 H 0.080 0.920 12 C -0.171 4.171 13 C 0.138 3.862 14 H 0.114 0.886 15 N -0.700 5.700 16 C 0.593 3.407 17 O -0.558 6.558 18 C -0.022 4.022 19 C -0.092 4.092 20 C -0.112 4.112 21 Cl -0.025 7.025 22 C 0.105 3.895 23 Cl 0.018 6.982 24 N -0.507 5.507 25 H 0.441 0.559 26 C -0.139 4.139 27 H 0.251 0.749 28 H 0.376 0.624 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.409 0.591 32 H 0.169 0.831 33 H 0.085 0.915 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.519 -24.026 5.024 25.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.223 1.223 7 C -0.374 4.374 8 H 0.094 0.906 9 N -0.361 5.361 10 C 0.038 3.962 11 H 0.098 0.902 12 C -0.213 4.213 13 C 0.033 3.967 14 H 0.132 0.868 15 N -0.350 5.350 16 C 0.380 3.620 17 O -0.437 6.437 18 C -0.136 4.136 19 C -0.118 4.118 20 C -0.146 4.146 21 Cl 0.004 6.996 22 C -0.040 4.040 23 Cl 0.047 6.953 24 N -0.109 5.109 25 H 0.284 0.716 26 C -0.179 4.179 27 H 0.060 0.940 28 H 0.208 0.792 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.245 0.755 32 H 0.187 0.813 33 H 0.104 0.896 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.732 -24.012 5.055 24.990 hybrid contribution -0.974 1.411 0.054 1.716 sum -5.707 -22.601 5.109 23.863 Atomic orbital electron populations 1.69795 1.06469 1.25963 1.59663 1.25511 0.96372 1.00955 1.03851 0.85140 0.78339 0.80137 0.76567 1.19124 1.22083 1.22280 1.19725 0.91573 0.85371 1.40717 0.90575 1.42497 1.05395 1.00781 1.87385 1.21708 0.95861 0.84106 0.94477 0.90198 1.24212 1.01419 0.96168 0.99518 1.22253 0.93565 0.86591 0.94295 0.86820 1.45774 1.10821 1.21421 1.56952 1.16989 0.86906 0.80442 0.77658 1.90865 1.16495 1.76342 1.59969 1.20167 0.81451 1.00283 1.11675 1.21284 0.98541 0.93057 0.98945 1.19684 0.92594 0.93583 1.08774 1.98354 1.97607 1.28732 1.74910 1.20678 0.87211 0.91536 1.04618 1.98449 1.07043 1.94507 1.95317 1.41829 1.05737 1.19095 1.44263 0.71618 1.23679 1.01079 0.94744 0.98381 0.94042 0.79181 0.91029 0.92552 0.75497 0.81304 0.89622 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.27 13.06 21.65 0.28 -56.99 16 2 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 3 Si 0.97 45.08 29.55 68.60 2.03 47.10 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 7 C -0.24 -12.92 9.97 84.03 0.84 -12.08 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.72 -34.06 5.41 -320.16 -1.73 -35.79 16 10 C 0.15 5.30 4.48 45.58 0.20 5.51 16 11 H 0.08 2.86 8.10 -2.39 -0.02 2.84 16 12 C -0.17 -5.41 7.70 31.18 0.24 -5.17 16 13 C 0.14 3.48 4.22 45.52 0.19 3.67 16 14 H 0.11 2.99 7.49 -2.39 -0.02 2.97 16 15 N -0.70 -14.35 5.36 -444.11 -2.38 -16.73 16 16 C 0.59 13.96 7.78 86.41 0.67 14.63 16 17 O -0.56 -17.38 16.50 -4.39 -0.07 -17.45 16 18 C -0.02 -0.41 7.06 40.31 0.28 -0.12 16 19 C -0.09 -1.77 10.64 22.58 0.24 -1.53 16 20 C -0.11 -1.99 6.66 22.06 0.15 -1.84 16 21 Cl -0.02 -0.41 29.12 -2.72 -0.08 -0.49 16 22 C 0.11 1.64 7.75 83.52 0.65 2.29 16 23 Cl 0.02 0.24 29.13 -2.72 -0.08 0.16 16 24 N -0.51 -6.97 6.01 -174.51 -1.05 -8.02 16 25 H 0.44 3.59 8.19 -92.71 -0.76 2.83 16 26 C -0.14 -3.68 7.58 31.12 0.24 -3.45 16 27 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 28 H 0.38 18.78 7.93 -92.71 -0.73 18.05 16 29 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.41 6.00 7.84 -92.70 -0.73 5.27 16 32 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 33 H 0.09 2.04 8.14 -2.39 -0.02 2.03 16 34 H 0.09 2.27 8.09 -2.39 -0.02 2.25 16 Total: -1.00 -66.03 331.03 0.06 -65.97 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: -1.03 Total: 24.01 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 4.17 Total: -1.79 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -4.88 Total: -117.53 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.07 Total: -17.45 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.16 Total: -0.33 kcal Total: -66.03 0.06 -65.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022517587.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.836 kcal (2) G-P(sol) polarization free energy of solvation -66.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds