Wall clock time and date at job start Tue Mar 31 2020 12:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99345 * 2 1 4 4 H 1.48502 * 109.47070 * 274.98251 * 3 2 1 5 5 H 1.48490 * 109.47322 * 34.98745 * 3 2 1 6 6 H 1.48497 * 109.46795 * 154.98919 * 3 2 1 7 7 C 1.38802 * 120.00658 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00677 * 185.06718 * 7 2 1 9 9 N 1.36936 * 119.99720 * 5.06344 * 7 2 1 10 10 C 1.47584 * 134.49270 * 173.48634 * 9 7 2 11 11 C 1.53944 * 86.11905 * 155.35570 * 10 9 7 12 12 C 1.52998 * 113.74273 * 137.94929 * 11 10 9 13 13 N 1.46495 * 109.47465 * 176.92625 * 12 11 10 14 14 C 1.34781 * 120.00529 * 180.02562 * 13 12 11 15 15 O 1.21717 * 119.99434 * 359.97438 * 14 13 12 16 16 C 1.46543 * 119.99945 * 179.97438 * 14 13 12 17 17 C 1.37965 * 126.21985 * 180.32604 * 16 14 13 18 18 C 1.39784 * 107.12674 * 180.11031 * 17 16 14 19 19 Cl 1.73600 * 126.06091 * 179.87737 * 18 17 16 20 20 C 1.35719 * 107.87737 * 359.61324 * 18 17 16 21 21 Cl 1.73600 * 125.58375 * 180.26451 * 20 18 17 22 22 N 1.35659 * 108.82874 * 0.24101 * 20 18 17 23 23 H 0.97001 * 125.69414 * 179.97438 * 22 20 18 24 24 C 1.47817 * 134.45992 * 353.34592 * 9 7 2 25 25 H 0.97004 * 120.00438 * 0.02562 * 1 2 3 26 26 H 1.08997 * 113.77595 * 41.05090 * 10 9 7 27 27 H 1.09003 * 113.76849 * 269.65733 * 10 9 7 28 28 H 1.08996 * 113.74329 * 269.15166 * 11 10 9 29 29 H 1.09002 * 109.46998 * 56.92499 * 12 11 10 30 30 H 1.09000 * 109.47413 * 296.92913 * 12 11 10 31 31 H 0.97010 * 119.99690 * 359.97438 * 13 12 11 32 32 H 1.08004 * 126.43471 * 359.97438 * 17 16 14 33 33 H 1.08999 * 113.76645 * 90.38039 * 24 9 7 34 34 H 1.09002 * 113.83340 * 318.92644 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.3922 2.1074 -1.3948 5 1 1.5041 2.6200 0.8027 6 1 3.5963 1.4123 0.5919 7 6 2.0103 -1.2020 0.0005 8 1 3.0872 -1.2038 0.0831 9 7 1.3297 -2.3857 -0.1036 10 6 1.7289 -3.7984 -0.2548 11 6 0.3713 -4.1416 0.3846 12 6 -0.3476 -5.3131 -0.2874 13 7 -1.5871 -5.6056 0.4365 14 6 -2.3896 -6.6061 0.0222 15 8 -2.0846 -7.2662 -0.9539 16 6 -3.6293 -6.8989 0.7468 17 6 -4.5374 -7.8914 0.4407 18 6 -5.5663 -7.8130 1.3837 19 17 -6.9682 -8.8344 1.4538 20 6 -5.2720 -6.8005 2.2382 21 17 -6.2404 -6.3075 3.5920 22 7 -4.0968 -6.2371 1.8613 23 1 -3.6590 -5.4925 2.3026 24 6 -0.1000 -2.7610 -0.1070 25 1 -0.4851 0.8400 -0.0004 26 1 2.5862 -4.0806 0.3562 27 1 1.8199 -4.1206 -1.2922 28 1 0.4078 -4.2319 1.4702 29 1 0.2975 -6.1917 -0.2731 30 1 -0.5825 -5.0517 -1.3192 31 1 -1.8300 -5.0797 1.2147 32 1 -4.4676 -8.5952 -0.3755 33 1 -0.5474 -2.7778 -1.1008 34 1 -0.7001 -2.2163 0.6218 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031882875.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:18 Heat of formation + Delta-G solvation = 49.954763 kcal Electronic energy + Delta-G solvation = -20836.552973 eV Core-core repulsion = 17244.869236 eV Total energy + Delta-G solvation = -3591.683736 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.83347 -39.39964 -38.02254 -37.18444 -36.76716 -34.68595 -32.31431 -31.52540 -30.04635 -28.55600 -26.01110 -24.89936 -23.22554 -21.98782 -21.12667 -20.70504 -19.84221 -18.66394 -16.85331 -16.51653 -16.07130 -15.87792 -15.15084 -15.09464 -14.70866 -14.42888 -14.07324 -13.78465 -13.60895 -13.43961 -13.03512 -12.47659 -12.26884 -12.11759 -11.79403 -11.53372 -11.42745 -11.22140 -11.07571 -10.81929 -10.69157 -10.33335 -9.93396 -9.88026 -9.53910 -9.40120 -9.10980 -8.86721 -8.58605 -6.95192 -5.86323 -3.17565 0.87538 1.07931 1.77029 1.87194 2.77342 3.07509 3.10714 3.34166 3.39707 3.41347 4.38595 4.44578 4.54710 4.98297 5.08664 5.17186 5.24303 5.27416 5.53938 5.68590 5.81776 5.89859 6.03464 6.11212 6.22021 6.37553 6.52562 6.54713 6.61587 7.10479 7.22717 7.34488 7.46204 7.89459 7.99278 8.96627 9.62981 10.51651 11.31485 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.021031 B = 0.002527 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.020474 B =11077.926243 C =12074.719890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.225 4.225 8 H 0.081 0.919 9 N -0.613 5.613 10 C 0.129 3.871 11 C -0.156 4.156 12 C 0.130 3.870 13 N -0.718 5.718 14 C 0.587 3.413 15 O -0.522 6.522 16 C -0.011 4.011 17 C -0.089 4.089 18 C -0.099 4.099 19 Cl -0.029 7.029 20 C 0.098 3.902 21 Cl 0.004 6.996 22 N -0.520 5.520 23 H 0.430 0.570 24 C 0.171 3.829 25 H 0.254 0.746 26 H 0.046 0.954 27 H 0.037 0.963 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.396 0.604 32 H 0.168 0.832 33 H 0.030 0.970 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.432 -16.173 6.449 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.352 4.352 8 H 0.098 0.902 9 N -0.339 5.339 10 C 0.002 3.998 11 C -0.176 4.176 12 C 0.007 3.993 13 N -0.368 5.368 14 C 0.372 3.628 15 O -0.398 6.398 16 C -0.125 4.125 17 C -0.116 4.116 18 C -0.134 4.134 19 Cl -0.001 7.001 20 C -0.047 4.047 21 Cl 0.033 6.967 22 N -0.122 5.122 23 H 0.270 0.730 24 C 0.046 3.954 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.230 0.770 32 H 0.186 0.814 33 H 0.048 0.952 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.226 -16.183 5.932 21.132 hybrid contribution 0.241 1.675 0.709 1.835 sum -11.985 -14.508 6.641 19.956 Atomic orbital electron populations 1.69818 1.05081 1.25443 1.56364 1.24820 0.95699 0.97588 1.02253 0.86127 0.78757 0.83481 0.77588 1.21554 1.21689 1.20519 1.19033 0.90817 0.82042 1.43336 0.90153 1.45962 1.02360 1.00722 1.84827 1.22486 0.93876 0.86361 0.97039 1.23857 0.98541 0.95069 1.00115 1.21559 0.83346 0.98177 0.96253 1.45964 1.23980 1.34112 1.32723 1.16810 0.81446 0.80815 0.83717 1.90884 1.72900 1.50001 1.26035 1.20569 0.99285 0.99953 0.92722 1.21146 0.91272 0.99108 1.00025 1.19600 0.94807 0.98614 1.00412 1.98351 1.37787 1.65849 1.98100 1.20585 0.89566 0.98773 0.95750 1.98435 1.66694 1.90990 1.40606 1.41938 1.17365 1.28885 1.23985 0.73013 1.22301 0.88124 0.87186 0.97828 0.93618 0.93594 0.94502 0.89248 0.91370 0.90815 0.77025 0.81424 0.95206 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.54 11.51 55.49 0.64 -25.90 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.70 29.56 -169.99 -5.02 16.67 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.22 -6.16 10.69 -15.06 -0.16 -6.32 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.61 -15.08 3.70 -177.68 -0.66 -15.73 16 10 C 0.13 2.45 8.51 -2.97 -0.03 2.43 16 11 C -0.16 -2.54 3.93 -89.70 -0.35 -2.89 16 12 C 0.13 1.81 5.51 -4.05 -0.02 1.79 16 13 N -0.72 -8.53 5.55 -61.66 -0.34 -8.87 16 14 C 0.59 7.60 7.78 -12.91 -0.10 7.50 16 15 O -0.52 -8.52 16.88 5.17 0.09 -8.43 16 16 C -0.01 -0.12 7.06 -81.94 -0.58 -0.70 16 17 C -0.09 -0.95 10.64 -39.10 -0.42 -1.36 16 18 C -0.10 -1.00 6.66 -39.91 -0.27 -1.27 16 19 Cl -0.03 -0.28 29.12 -51.86 -1.51 -1.79 16 20 C 0.10 0.91 7.75 -16.76 -0.13 0.78 16 21 Cl 0.00 0.04 29.13 -51.86 -1.51 -1.48 16 22 N -0.52 -4.48 6.00 -6.51 -0.04 -4.52 16 23 H 0.43 2.67 8.19 -40.82 -0.33 2.33 16 24 C 0.17 3.70 6.99 -2.84 -0.02 3.68 16 25 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.13 7.88 -51.93 -0.41 0.72 16 31 H 0.40 3.81 7.60 -40.82 -0.31 3.50 16 32 H 0.17 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.03 0.68 7.92 -51.93 -0.41 0.27 16 34 H 0.07 1.59 7.37 -51.93 -0.38 1.21 16 LS Contribution 329.47 15.07 4.97 4.97 Total: -1.00 -31.95 329.47 -9.06 -41.01 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -3.50 Total: 0.73 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -2.17 Total: 3.34 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.40 Total: -55.02 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.09 Total: -8.43 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -3.02 Total: -3.26 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.95 -9.06 -41.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031882875.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.965 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds