Wall clock time and date at job start Tue Mar 31 2020 12:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99345 * 2 1 4 4 H 1.48502 * 109.47070 * 274.98251 * 3 2 1 5 5 H 1.48490 * 109.47322 * 34.98745 * 3 2 1 6 6 H 1.48497 * 109.46795 * 154.98919 * 3 2 1 7 7 C 1.38802 * 120.00658 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00677 * 185.06718 * 7 2 1 9 9 N 1.36936 * 119.99720 * 5.06344 * 7 2 1 10 10 C 1.47584 * 134.49270 * 173.48634 * 9 7 2 11 11 C 1.53944 * 86.11905 * 155.35570 * 10 9 7 12 12 C 1.52998 * 113.74273 * 137.94929 * 11 10 9 13 13 N 1.46495 * 109.47465 * 176.92625 * 12 11 10 14 14 C 1.34781 * 120.00529 * 180.02562 * 13 12 11 15 15 O 1.21717 * 119.99434 * 359.97438 * 14 13 12 16 16 C 1.46543 * 119.99945 * 179.97438 * 14 13 12 17 17 C 1.37965 * 126.21985 * 180.32604 * 16 14 13 18 18 C 1.39784 * 107.12674 * 180.11031 * 17 16 14 19 19 Cl 1.73600 * 126.06091 * 179.87737 * 18 17 16 20 20 C 1.35719 * 107.87737 * 359.61324 * 18 17 16 21 21 Cl 1.73600 * 125.58375 * 180.26451 * 20 18 17 22 22 N 1.35659 * 108.82874 * 0.24101 * 20 18 17 23 23 H 0.97001 * 125.69414 * 179.97438 * 22 20 18 24 24 C 1.47817 * 134.45992 * 353.34592 * 9 7 2 25 25 H 0.97004 * 120.00438 * 0.02562 * 1 2 3 26 26 H 1.08997 * 113.77595 * 41.05090 * 10 9 7 27 27 H 1.09003 * 113.76849 * 269.65733 * 10 9 7 28 28 H 1.08996 * 113.74329 * 269.15166 * 11 10 9 29 29 H 1.09002 * 109.46998 * 56.92499 * 12 11 10 30 30 H 1.09000 * 109.47413 * 296.92913 * 12 11 10 31 31 H 0.97010 * 119.99690 * 359.97438 * 13 12 11 32 32 H 1.08004 * 126.43471 * 359.97438 * 17 16 14 33 33 H 1.08999 * 113.76645 * 90.38039 * 24 9 7 34 34 H 1.09002 * 113.83340 * 318.92644 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.3922 2.1074 -1.3948 5 1 1.5041 2.6200 0.8027 6 1 3.5963 1.4123 0.5919 7 6 2.0103 -1.2020 0.0005 8 1 3.0872 -1.2038 0.0831 9 7 1.3297 -2.3857 -0.1036 10 6 1.7289 -3.7984 -0.2548 11 6 0.3713 -4.1416 0.3846 12 6 -0.3476 -5.3131 -0.2874 13 7 -1.5871 -5.6056 0.4365 14 6 -2.3896 -6.6061 0.0222 15 8 -2.0846 -7.2662 -0.9539 16 6 -3.6293 -6.8989 0.7468 17 6 -4.5374 -7.8914 0.4407 18 6 -5.5663 -7.8130 1.3837 19 17 -6.9682 -8.8344 1.4538 20 6 -5.2720 -6.8005 2.2382 21 17 -6.2404 -6.3075 3.5920 22 7 -4.0968 -6.2371 1.8613 23 1 -3.6590 -5.4925 2.3026 24 6 -0.1000 -2.7610 -0.1070 25 1 -0.4851 0.8400 -0.0004 26 1 2.5862 -4.0806 0.3562 27 1 1.8199 -4.1206 -1.2922 28 1 0.4078 -4.2319 1.4702 29 1 0.2975 -6.1917 -0.2731 30 1 -0.5825 -5.0517 -1.3192 31 1 -1.8300 -5.0797 1.2147 32 1 -4.4676 -8.5952 -0.3755 33 1 -0.5474 -2.7778 -1.1008 34 1 -0.7001 -2.2163 0.6218 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031882875.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:17 Heat of formation + Delta-G solvation = 28.662279 kcal Electronic energy + Delta-G solvation = -20837.476284 eV Core-core repulsion = 17244.869236 eV Total energy + Delta-G solvation = -3592.607048 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.64234 -40.54655 -39.51862 -37.90493 -37.51330 -35.90701 -34.22112 -32.33870 -31.20393 -29.93231 -27.57355 -26.54807 -24.47752 -23.34294 -21.94743 -21.61671 -21.08203 -19.88099 -18.73287 -17.46966 -17.22629 -17.01076 -16.70540 -16.02844 -15.84239 -15.63852 -15.49743 -14.89509 -14.77475 -14.47013 -14.38503 -14.03101 -13.33224 -13.10705 -12.99595 -12.90583 -12.86099 -12.55966 -12.48428 -12.23581 -11.98085 -11.86160 -11.64253 -11.38923 -11.17592 -10.87592 -10.26779 -10.12927 -9.38563 -8.90994 -7.93713 -5.25050 0.03010 0.33042 1.02389 1.06092 1.44898 1.46721 1.55101 1.89049 2.13247 2.21653 2.46514 3.27501 3.39269 3.61120 3.72304 3.76522 4.04489 4.22521 4.34394 4.47461 4.59237 4.79102 4.85378 4.88493 5.02399 5.08808 5.20598 5.25069 5.30650 5.53810 5.63907 5.86247 5.93083 6.38251 6.91647 6.99490 7.59944 8.55882 9.23817 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.021031 B = 0.002527 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.020474 B =11077.926243 C =12074.719890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.974 3.026 4 H -0.291 1.291 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.235 4.235 8 H 0.083 0.917 9 N -0.647 5.647 10 C 0.125 3.875 11 C -0.115 4.115 12 C 0.141 3.859 13 N -0.710 5.710 14 C 0.592 3.408 15 O -0.559 6.559 16 C -0.021 4.021 17 C -0.091 4.091 18 C -0.111 4.111 19 Cl -0.025 7.025 20 C 0.105 3.895 21 Cl 0.017 6.983 22 N -0.508 5.508 23 H 0.441 0.559 24 C 0.168 3.832 25 H 0.248 0.752 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.409 0.591 32 H 0.171 0.829 33 H 0.013 0.987 34 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.217 -16.931 7.460 22.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.803 3.197 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.191 1.191 7 C -0.363 4.363 8 H 0.101 0.899 9 N -0.373 5.373 10 C 0.000 4.000 11 C -0.135 4.135 12 C 0.017 3.983 13 N -0.360 5.360 14 C 0.379 3.621 15 O -0.437 6.437 16 C -0.135 4.135 17 C -0.118 4.118 18 C -0.146 4.146 19 Cl 0.004 6.996 20 C -0.041 4.041 21 Cl 0.046 6.954 22 N -0.110 5.110 23 H 0.283 0.717 24 C 0.042 3.958 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.125 0.875 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.245 0.755 32 H 0.188 0.812 33 H 0.031 0.969 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.990 -16.950 6.974 21.902 hybrid contribution 0.139 1.855 0.418 1.906 sum -11.851 -15.095 7.392 20.566 Atomic orbital electron populations 1.69986 1.06347 1.25589 1.58023 1.25612 0.96581 1.00759 1.02988 0.85122 0.78032 0.79433 0.77153 1.21795 1.22043 1.19109 1.19417 0.91313 0.83544 1.42045 0.89907 1.46395 1.03884 1.02019 1.85016 1.22706 0.95829 0.83311 0.98130 1.23432 0.96299 0.92843 1.00895 1.21299 0.84149 0.97524 0.95292 1.45798 1.23299 1.34057 1.32881 1.16936 0.81746 0.80225 0.83198 1.90867 1.73864 1.51324 1.27695 1.20162 0.98840 1.00846 0.93668 1.21280 0.91333 0.99013 1.00140 1.19672 0.95085 0.99174 1.00645 1.98351 1.37413 1.65737 1.98089 1.20679 0.89492 0.98258 0.95685 1.98446 1.66312 1.90819 1.39844 1.41856 1.17051 1.28824 1.23268 0.71659 1.22233 0.86842 0.90221 0.96483 0.94292 0.91901 0.93496 0.87455 0.89772 0.92247 0.75550 0.81182 0.96947 0.94025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.85 11.51 21.65 0.25 -55.60 16 2 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 3 Si 0.97 44.86 29.56 68.60 2.03 46.88 16 4 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.23 -12.85 10.69 84.03 0.90 -11.95 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.65 -31.64 3.70 -716.06 -2.65 -34.29 16 10 C 0.13 4.55 8.51 86.48 0.74 5.29 16 11 C -0.12 -3.55 3.93 -10.14 -0.04 -3.59 16 12 C 0.14 3.67 5.51 86.38 0.48 4.15 16 13 N -0.71 -15.66 5.55 -467.21 -2.59 -18.26 16 14 C 0.59 14.61 7.78 86.41 0.67 15.28 16 15 O -0.56 -17.83 16.88 -4.40 -0.07 -17.90 16 16 C -0.02 -0.42 7.06 40.31 0.28 -0.14 16 17 C -0.09 -1.84 10.64 22.58 0.24 -1.60 16 18 C -0.11 -2.09 6.66 22.06 0.15 -1.94 16 19 Cl -0.02 -0.43 29.12 -2.72 -0.08 -0.51 16 20 C 0.10 1.77 7.75 83.52 0.65 2.42 16 21 Cl 0.02 0.25 29.13 -2.72 -0.08 0.17 16 22 N -0.51 -7.83 6.00 -174.52 -1.05 -8.88 16 23 H 0.44 4.56 8.19 -92.71 -0.76 3.80 16 24 C 0.17 7.29 6.99 86.44 0.60 7.90 16 25 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 26 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.05 1.64 8.10 -2.39 -0.02 1.62 16 28 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.06 1.77 7.88 -2.39 -0.02 1.75 16 31 H 0.41 7.01 7.60 -92.70 -0.70 6.31 16 32 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 33 H 0.01 0.59 7.92 -2.39 -0.02 0.57 16 34 H 0.04 2.01 7.37 -2.39 -0.02 1.99 16 Total: -1.00 -68.66 329.47 0.59 -68.06 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -0.29 Total: 7.73 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 5.13 Total: 12.59 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -6.04 Total: -117.03 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.07 Total: -17.90 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.16 Total: -0.33 kcal Total: -68.66 0.59 -68.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031882875.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.726 kcal (2) G-P(sol) polarization free energy of solvation -68.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds