Wall clock time and date at job start Tue Mar 31 2020 12:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 120.00048 * 2 1 4 4 H 1.48504 * 109.46895 * 239.99825 * 3 2 1 5 5 H 1.48497 * 109.47213 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47229 * 120.00115 * 3 2 1 7 7 C 1.38814 * 119.99581 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99878 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00453 * 359.97438 * 7 2 1 10 10 C 1.47586 * 134.49214 * 0.02562 * 9 7 2 11 11 C 1.53950 * 86.11814 * 155.35771 * 10 9 7 12 12 C 1.47585 * 134.49495 * 179.97438 * 9 7 2 13 13 H 1.09002 * 113.86542 * 90.33260 * 12 9 7 14 14 C 1.52997 * 113.77049 * 318.94949 * 12 9 7 15 15 N 1.46505 * 109.47212 * 78.49995 * 14 12 9 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 12 17 17 O 1.21715 * 120.00379 * 0.02562 * 16 15 14 18 18 C 1.46542 * 119.99608 * 179.97438 * 16 15 14 19 19 C 1.37970 * 126.22222 * 179.69048 * 18 16 15 20 20 C 1.39794 * 107.12552 * 179.84936 * 19 18 16 21 21 Cl 1.73599 * 126.06146 * 180.15728 * 20 19 18 22 22 C 1.35718 * 107.87823 * 0.42058 * 20 19 18 23 23 Cl 1.73594 * 125.58672 * 179.71783 * 22 20 19 24 24 N 1.35663 * 108.83168 * 359.74024 * 22 20 19 25 25 H 0.97004 * 125.69682 * 179.97438 * 24 22 20 26 26 H 0.97001 * 120.00214 * 0.02562 * 1 2 3 27 27 H 1.08997 * 113.77110 * 41.05454 * 10 9 7 28 28 H 1.08997 * 113.86718 * 269.66802 * 10 9 7 29 29 H 1.09005 * 113.73853 * 269.26246 * 11 10 9 30 30 H 1.08994 * 113.83895 * 137.96738 * 11 10 9 31 31 H 1.09002 * 109.47153 * 318.49988 * 14 12 9 32 32 H 1.09001 * 109.46832 * 198.50179 * 14 12 9 33 33 H 0.96996 * 119.99606 * 0.02562 * 15 14 12 34 34 H 1.07993 * 126.43463 * 359.96757 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6963 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 -0.1033 -2.7574 0.0019 11 6 0.3469 -4.0836 -0.6373 12 6 1.7201 -3.8102 0.0019 13 1 1.8332 -4.2363 0.9988 14 6 2.9017 -4.1226 -0.9184 15 7 4.1495 -3.7190 -0.2652 16 6 5.3280 -3.9004 -0.8933 17 8 5.3558 -4.3989 -2.0033 18 6 6.5760 -3.4962 -0.2402 19 6 7.8475 -3.6269 -0.7596 20 6 8.7351 -3.1133 0.1904 21 17 10.4624 -3.0323 0.0366 22 6 8.0076 -2.6945 1.2568 23 17 8.6526 -1.9846 2.7037 24 7 6.6937 -2.9220 1.0071 25 1 5.9595 -2.7153 1.6065 26 1 -0.4850 0.8400 -0.0004 27 1 -0.7169 -2.1397 -0.6538 28 1 -0.5289 -2.8725 0.9988 29 1 0.3590 -4.0636 -1.7271 30 1 -0.1585 -4.9610 -0.2340 31 1 2.7880 -3.5754 -1.8542 32 1 2.9289 -5.1927 -1.1242 33 1 4.1273 -3.3221 0.6195 34 1 8.1079 -4.0455 -1.7205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038569073.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:24 Heat of formation + Delta-G solvation = 50.322389 kcal Electronic energy + Delta-G solvation = -21509.843950 eV Core-core repulsion = 17918.176155 eV Total energy + Delta-G solvation = -3591.667795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.67533 -39.20695 -37.95078 -37.05800 -36.65612 -34.37128 -32.30072 -31.38485 -29.81390 -28.06391 -27.50420 -23.46730 -23.39260 -21.97304 -20.96841 -20.52198 -19.61431 -18.87402 -16.88749 -16.28233 -15.83921 -15.74527 -15.20452 -14.96076 -14.49801 -14.29732 -13.97672 -13.72145 -13.48847 -13.38218 -13.05803 -12.15807 -12.14441 -11.89917 -11.67387 -11.52303 -11.23572 -11.11331 -11.10579 -10.81586 -10.67092 -10.27698 -9.94657 -9.85579 -9.53460 -9.26161 -8.90677 -8.88067 -8.43188 -7.00175 -5.86403 -3.19675 1.03958 1.21395 1.88724 2.01366 2.93682 3.24788 3.29998 3.33034 3.36356 3.37428 4.33156 4.60254 4.71217 5.00783 5.17575 5.29075 5.41047 5.51406 5.56641 5.79265 5.93930 5.97619 6.16847 6.22216 6.30061 6.49416 6.54590 6.65673 6.71933 7.14068 7.30590 7.49357 7.57623 7.88091 8.20550 8.93191 9.60805 10.48723 11.29921 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.013851 B = 0.003865 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.098718 B = 7242.385477 C = 8428.472544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.003 4.003 3 Si 0.906 3.094 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.225 4.225 8 H 0.075 0.925 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.155 4.155 12 C 0.124 3.876 13 H 0.049 0.951 14 C 0.123 3.877 15 N -0.709 5.709 16 C 0.585 3.415 17 O -0.527 6.527 18 C -0.007 4.007 19 C -0.092 4.092 20 C -0.099 4.099 21 Cl -0.032 7.032 22 C 0.097 3.903 23 Cl 0.002 6.998 24 N -0.519 5.519 25 H 0.430 0.570 26 H 0.255 0.745 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.397 0.603 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.846 -8.371 3.936 16.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.200 4.200 3 Si 0.736 3.264 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.352 4.352 8 H 0.093 0.907 9 N -0.329 5.329 10 C 0.034 3.966 11 C -0.194 4.194 12 C 0.017 3.983 13 H 0.067 0.933 14 C -0.001 4.001 15 N -0.359 5.359 16 C 0.371 3.629 17 O -0.404 6.404 18 C -0.122 4.122 19 C -0.118 4.118 20 C -0.134 4.134 21 Cl -0.003 7.003 22 C -0.048 4.048 23 Cl 0.031 6.969 24 N -0.121 5.121 25 H 0.270 0.730 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.045 0.955 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.231 0.769 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 13.879 -8.269 3.318 16.493 hybrid contribution 0.349 1.520 1.170 1.949 sum 14.228 -6.750 4.488 16.375 Atomic orbital electron populations 1.69799 1.04963 1.25523 1.56020 1.24748 0.95605 0.97395 1.02272 0.86310 0.78638 0.83553 0.77912 1.21033 1.21402 1.21298 1.18809 0.89914 0.81957 1.44540 0.90719 1.46053 1.02339 0.98438 1.86041 1.22199 0.87867 0.89608 0.96953 1.23764 0.95899 0.99031 1.00675 1.22514 0.92408 0.87807 0.95618 0.93340 1.21880 0.81565 0.99102 0.97552 1.45873 1.06286 1.62681 1.21020 1.16801 0.81711 0.79169 0.85236 1.90860 1.86400 1.44651 1.18450 1.20630 0.96098 1.08843 0.86582 1.21116 0.88389 1.02222 1.00100 1.19572 0.86395 1.11575 0.95846 1.98342 1.06737 1.97507 1.97710 1.20560 0.84275 1.07743 0.92221 1.98426 1.83560 1.81647 1.33312 1.41972 1.06458 1.47665 1.15957 0.72962 0.93508 0.90770 0.95534 0.90390 0.92703 0.90428 0.91619 0.76936 0.81494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.06 11.38 55.49 0.63 -25.43 16 2 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 3 Si 0.91 21.42 29.55 -169.99 -5.02 16.40 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.22 -5.75 10.51 -15.06 -0.16 -5.90 16 8 H 0.08 1.82 7.80 -52.48 -0.41 1.41 16 9 N -0.60 -13.85 3.58 -170.73 -0.61 -14.46 16 10 C 0.16 3.47 7.52 -2.97 -0.02 3.45 16 11 C -0.15 -2.64 7.86 -25.82 -0.20 -2.85 16 12 C 0.12 2.20 4.33 -66.88 -0.29 1.91 16 13 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 14 C 0.12 2.04 5.53 -4.04 -0.02 2.01 16 15 N -0.71 -10.80 5.52 -61.66 -0.34 -11.14 16 16 C 0.59 9.21 7.78 -12.92 -0.10 9.11 16 17 O -0.53 -9.85 16.88 5.18 0.09 -9.76 16 18 C -0.01 -0.10 7.06 -81.93 -0.58 -0.67 16 19 C -0.09 -1.17 10.64 -39.10 -0.42 -1.59 16 20 C -0.10 -1.19 6.66 -39.90 -0.27 -1.45 16 21 Cl -0.03 -0.34 29.12 -51.86 -1.51 -1.85 16 22 C 0.10 1.11 7.75 -16.76 -0.13 0.98 16 23 Cl 0.00 0.02 29.13 -51.86 -1.51 -1.49 16 24 N -0.52 -5.88 6.01 -6.51 -0.04 -5.92 16 25 H 0.43 4.05 8.19 -40.82 -0.33 3.71 16 26 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.07 1.82 7.15 -51.93 -0.37 1.45 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.40 5.50 7.60 -40.82 -0.31 5.19 16 34 H 0.17 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 329.55 15.07 4.97 4.97 Total: -1.00 -30.25 329.55 -9.15 -39.40 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -3.52 Total: 4.46 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -2.28 Total: 4.82 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.36 Total: -56.94 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -3.02 Total: -3.34 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.25 -9.15 -39.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038569073.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.725 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds