Wall clock time and date at job start Tue Mar 31 2020 12:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 120.00048 * 2 1 4 4 H 1.48504 * 109.46895 * 239.99825 * 3 2 1 5 5 H 1.48497 * 109.47213 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47229 * 120.00115 * 3 2 1 7 7 C 1.38814 * 119.99581 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99878 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00453 * 359.97438 * 7 2 1 10 10 C 1.47586 * 134.49214 * 0.02562 * 9 7 2 11 11 C 1.53950 * 86.11814 * 155.35771 * 10 9 7 12 12 C 1.47585 * 134.49495 * 179.97438 * 9 7 2 13 13 H 1.09002 * 113.86542 * 90.33260 * 12 9 7 14 14 C 1.52997 * 113.77049 * 318.94949 * 12 9 7 15 15 N 1.46505 * 109.47212 * 78.49995 * 14 12 9 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 12 17 17 O 1.21715 * 120.00379 * 0.02562 * 16 15 14 18 18 C 1.46542 * 119.99608 * 179.97438 * 16 15 14 19 19 C 1.37970 * 126.22222 * 179.69048 * 18 16 15 20 20 C 1.39794 * 107.12552 * 179.84936 * 19 18 16 21 21 Cl 1.73599 * 126.06146 * 180.15728 * 20 19 18 22 22 C 1.35718 * 107.87823 * 0.42058 * 20 19 18 23 23 Cl 1.73594 * 125.58672 * 179.71783 * 22 20 19 24 24 N 1.35663 * 108.83168 * 359.74024 * 22 20 19 25 25 H 0.97004 * 125.69682 * 179.97438 * 24 22 20 26 26 H 0.97001 * 120.00214 * 0.02562 * 1 2 3 27 27 H 1.08997 * 113.77110 * 41.05454 * 10 9 7 28 28 H 1.08997 * 113.86718 * 269.66802 * 10 9 7 29 29 H 1.09005 * 113.73853 * 269.26246 * 11 10 9 30 30 H 1.08994 * 113.83895 * 137.96738 * 11 10 9 31 31 H 1.09002 * 109.47153 * 318.49988 * 14 12 9 32 32 H 1.09001 * 109.46832 * 198.50179 * 14 12 9 33 33 H 0.96996 * 119.99606 * 0.02562 * 15 14 12 34 34 H 1.07993 * 126.43463 * 359.96757 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6963 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 -0.1033 -2.7574 0.0019 11 6 0.3469 -4.0836 -0.6373 12 6 1.7201 -3.8102 0.0019 13 1 1.8332 -4.2363 0.9988 14 6 2.9017 -4.1226 -0.9184 15 7 4.1495 -3.7190 -0.2652 16 6 5.3280 -3.9004 -0.8933 17 8 5.3558 -4.3989 -2.0033 18 6 6.5760 -3.4962 -0.2402 19 6 7.8475 -3.6269 -0.7596 20 6 8.7351 -3.1133 0.1904 21 17 10.4624 -3.0323 0.0366 22 6 8.0076 -2.6945 1.2568 23 17 8.6526 -1.9846 2.7037 24 7 6.6937 -2.9220 1.0071 25 1 5.9595 -2.7153 1.6065 26 1 -0.4850 0.8400 -0.0004 27 1 -0.7169 -2.1397 -0.6538 28 1 -0.5289 -2.8725 0.9988 29 1 0.3590 -4.0636 -1.7271 30 1 -0.1585 -4.9610 -0.2340 31 1 2.7880 -3.5754 -1.8542 32 1 2.9289 -5.1927 -1.1242 33 1 4.1273 -3.3221 0.6195 34 1 8.1079 -4.0455 -1.7205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038569073.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:23 Heat of formation + Delta-G solvation = 30.657325 kcal Electronic energy + Delta-G solvation = -21510.696691 eV Core-core repulsion = 17918.176155 eV Total energy + Delta-G solvation = -3592.520536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.66090 -40.51605 -39.46942 -37.93542 -37.54103 -35.71108 -34.22003 -32.35030 -30.95261 -29.86663 -28.83761 -25.28841 -24.66379 -23.26663 -21.95311 -21.60226 -21.03260 -20.24575 -18.54060 -17.45437 -17.16139 -17.12934 -16.63982 -16.01016 -15.86225 -15.58493 -15.53157 -14.92326 -14.80682 -14.55573 -14.43287 -13.62752 -13.29881 -13.02242 -12.93681 -12.89302 -12.70802 -12.61313 -12.51800 -12.33338 -12.00555 -11.88843 -11.58761 -11.48362 -11.09484 -10.82618 -10.26622 -10.14079 -9.40831 -8.88473 -7.87420 -5.18671 0.01249 0.30041 0.98762 1.03908 1.41830 1.44986 1.49572 1.89016 2.12740 2.20003 2.45894 3.31766 3.38092 3.62265 3.70584 3.99299 4.08436 4.22156 4.35692 4.44799 4.63402 4.72180 4.86692 4.99680 5.08160 5.09819 5.19369 5.31648 5.34392 5.61591 5.75968 5.81189 5.98275 6.37694 6.94206 6.99183 7.65484 8.60183 9.29193 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.013851 B = 0.003865 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.098718 B = 7242.385477 C = 8428.472544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.960 3.040 4 H -0.286 1.286 5 H -0.299 1.299 6 H -0.274 1.274 7 C -0.212 4.212 8 H 0.085 0.915 9 N -0.629 5.629 10 C 0.149 3.851 11 C -0.131 4.131 12 C 0.132 3.868 13 H 0.074 0.926 14 C 0.131 3.869 15 N -0.706 5.706 16 C 0.589 3.411 17 O -0.561 6.561 18 C -0.023 4.023 19 C -0.090 4.090 20 C -0.109 4.109 21 Cl -0.022 7.022 22 C 0.104 3.896 23 Cl 0.018 6.982 24 N -0.510 5.510 25 H 0.438 0.562 26 H 0.245 0.755 27 H 0.037 0.963 28 H 0.022 0.978 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.404 0.596 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.445 -9.481 4.866 18.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.260 4.260 3 Si 0.790 3.210 4 H -0.213 1.213 5 H -0.226 1.226 6 H -0.200 1.200 7 C -0.341 4.341 8 H 0.103 0.897 9 N -0.355 5.355 10 C 0.023 3.977 11 C -0.169 4.169 12 C 0.026 3.974 13 H 0.092 0.908 14 C 0.007 3.993 15 N -0.355 5.355 16 C 0.376 3.624 17 O -0.440 6.440 18 C -0.137 4.137 19 C -0.117 4.117 20 C -0.144 4.144 21 Cl 0.007 6.993 22 C -0.042 4.042 23 Cl 0.046 6.954 24 N -0.112 5.112 25 H 0.281 0.719 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.040 0.960 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.239 0.761 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 15.496 -9.408 4.281 18.627 hybrid contribution -0.066 1.797 0.919 2.019 sum 15.430 -7.611 5.200 17.974 Atomic orbital electron populations 1.69980 1.06217 1.25197 1.58774 1.25445 0.96298 1.00287 1.03954 0.85421 0.77319 0.80220 0.78027 1.21260 1.22557 1.20002 1.19202 0.90578 0.83026 1.41296 0.89745 1.46396 1.03244 0.99923 1.85974 1.22168 0.87150 0.91865 0.96469 1.23561 0.95051 0.97770 1.00539 1.22688 0.93234 0.84548 0.96901 0.90843 1.21674 0.81699 1.00005 0.95916 1.45794 1.05883 1.62609 1.21246 1.16980 0.82259 0.78384 0.84766 1.90839 1.86945 1.46296 1.19941 1.20231 0.95235 1.10601 0.87606 1.21270 0.88394 1.01626 1.00390 1.19640 0.87008 1.11829 0.95882 1.98345 1.05801 1.97477 1.97696 1.20695 0.84214 1.06752 0.92532 1.98438 1.83321 1.81291 1.32317 1.41898 1.06799 1.47079 1.15417 0.71938 0.94614 0.94456 0.95978 0.90316 0.88740 0.93369 0.89315 0.76052 0.81075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.62 11.38 21.65 0.25 -55.37 16 2 C -0.07 -3.63 5.50 84.86 0.47 -3.17 16 3 Si 0.96 44.39 29.55 68.60 2.03 46.42 16 4 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.21 -10.76 10.51 84.03 0.88 -9.87 16 8 H 0.08 4.00 7.80 -2.91 -0.02 3.97 16 9 N -0.63 -28.43 3.58 -694.07 -2.48 -30.91 16 10 C 0.15 6.48 7.52 86.48 0.65 7.13 16 11 C -0.13 -4.15 7.86 31.24 0.25 -3.91 16 12 C 0.13 4.36 4.33 45.08 0.20 4.56 16 13 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 14 C 0.13 4.08 5.53 86.38 0.48 4.56 16 15 N -0.71 -20.16 5.52 -467.20 -2.58 -22.74 16 16 C 0.59 17.75 7.78 86.41 0.67 18.42 16 17 O -0.56 -20.52 16.88 -4.40 -0.07 -20.60 16 18 C -0.02 -0.57 7.06 40.31 0.28 -0.28 16 19 C -0.09 -2.17 10.64 22.58 0.24 -1.92 16 20 C -0.11 -2.41 6.66 22.06 0.15 -2.26 16 21 Cl -0.02 -0.43 29.12 -2.72 -0.08 -0.51 16 22 C 0.10 2.16 7.75 83.52 0.65 2.80 16 23 Cl 0.02 0.32 29.13 -2.72 -0.08 0.24 16 24 N -0.51 -10.48 6.01 -174.51 -1.05 -11.53 16 25 H 0.44 7.24 8.19 -92.71 -0.76 6.48 16 26 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 27 H 0.04 1.89 7.15 -2.39 -0.02 1.87 16 28 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 2.51 8.10 -2.38 -0.02 2.50 16 30 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.40 10.29 7.60 -92.71 -0.70 9.58 16 34 H 0.17 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -65.45 329.55 0.55 -64.90 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -0.29 Total: 14.04 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 4.91 Total: 16.05 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -5.86 Total: -120.55 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.07 Total: -20.60 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -0.16 Total: -0.27 kcal Total: -65.45 0.55 -64.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038569073.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.558 kcal (2) G-P(sol) polarization free energy of solvation -65.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds