Wall clock time and date at job start Tue Mar 31 2020 11:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46641 * 2 1 4 4 N 1.46499 * 109.47070 * 239.99909 * 2 1 3 5 5 C 1.34777 * 120.00199 * 85.00207 * 4 2 1 6 6 O 1.21283 * 119.99750 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99928 * 180.27479 * 5 4 2 8 8 S 1.80999 * 109.46903 * 179.72354 * 7 5 4 9 9 C 1.76200 * 99.99730 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00351 * 0.02562 * 9 8 7 11 11 C 1.38796 * 120.00095 * 179.97438 * 9 8 7 12 12 N 1.31634 * 119.99941 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00384 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46990 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47522 * 119.99735 * 13 11 9 16 16 H 1.48500 * 109.47073 * 240.00101 * 13 11 9 17 17 C 1.50697 * 109.46811 * 119.99346 * 2 1 3 18 18 C 1.38264 * 119.97745 * 259.99990 * 17 2 1 19 19 C 1.38218 * 120.06316 * 180.02562 * 18 17 2 20 20 C 1.38322 * 120.00911 * 0.02562 * 19 18 17 21 21 Cl 1.73602 * 120.02569 * 180.02562 * 20 19 18 22 22 C 1.38545 * 119.95412 * 359.97438 * 20 19 18 23 23 F 1.35103 * 120.03577 * 180.02562 * 22 20 19 24 24 C 1.38201 * 119.97332 * 79.73227 * 17 2 1 25 25 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47598 * 300.00373 * 1 2 3 27 27 H 1.09005 * 109.47473 * 60.00264 * 1 2 3 28 28 H 0.97000 * 119.99484 * 264.99304 * 4 2 1 29 29 H 1.09004 * 109.46965 * 299.72211 * 7 5 4 30 30 H 1.08994 * 109.46990 * 59.72065 * 7 5 4 31 31 H 0.97002 * 120.00288 * 179.97438 * 12 11 9 32 32 H 1.07999 * 119.96995 * 359.97438 * 18 17 2 33 33 H 1.07996 * 119.99956 * 180.02562 * 19 18 17 34 34 H 1.07999 * 120.00570 * 359.97438 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1583 -2.4117 7 6 2.6435 -0.7303 -3.5891 8 16 2.6982 0.4311 -4.9762 9 6 3.2960 -0.6356 -6.2449 10 1 3.5060 -1.6719 -6.0247 11 6 3.4959 -0.1444 -7.5276 12 7 3.2385 1.1182 -7.7964 13 14 4.1289 -1.2754 -8.8728 14 1 4.3383 -2.6365 -8.3172 15 1 3.1360 -1.3376 -9.9752 16 1 5.4163 -0.7511 -9.3952 17 6 2.0322 -0.7103 1.2305 18 6 2.4586 0.0203 2.3243 19 6 2.9201 -0.6293 3.4536 20 6 2.9563 -2.0116 3.4904 21 17 3.5352 -2.8280 4.9089 22 6 2.5292 -2.7442 2.3948 23 9 2.5634 -4.0943 2.4291 24 6 2.0612 -2.0915 1.2670 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 2.2491 -1.6318 -1.1525 29 1 3.6436 -1.1225 -3.4039 30 1 1.9697 -1.5525 -3.8299 31 1 3.3785 1.4616 -8.6927 32 1 2.4318 1.0996 2.2958 33 1 3.2524 -0.0577 4.3075 34 1 1.7235 -2.6615 0.4141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116428642.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:30 Heat of formation + Delta-G solvation = -70.125858 kcal Electronic energy + Delta-G solvation = -20609.438635 eV Core-core repulsion = 16994.671557 eV Total energy + Delta-G solvation = -3614.767078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -49.34283 -40.30158 -38.94828 -37.08753 -35.37997 -32.45175 -31.97498 -31.24439 -29.77565 -28.48086 -25.51792 -24.43839 -23.48323 -21.57969 -20.28145 -18.40589 -17.66254 -17.16689 -16.87139 -16.27719 -16.17050 -15.95395 -15.06815 -14.82415 -14.52467 -14.18528 -14.15878 -13.90545 -13.59592 -13.28977 -13.11670 -12.76387 -12.66597 -12.48953 -12.02470 -11.95993 -11.59692 -11.37261 -11.29699 -11.08606 -11.04330 -10.77533 -9.83497 -9.56996 -9.42811 -9.16908 -9.09160 -8.97861 -8.26939 -6.52953 -6.24202 -3.94896 0.43559 0.59494 1.56185 2.82882 2.98625 3.05212 3.20284 3.26790 3.31160 3.57659 3.65072 4.05884 4.17784 4.19319 4.57150 4.66421 4.91858 5.05048 5.11309 5.12135 5.16981 5.28608 5.42805 5.47955 5.52717 5.61007 5.71279 5.84028 5.94452 6.06214 6.10245 6.19239 6.50659 7.56377 7.58452 8.33190 8.50591 9.21524 10.83251 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.023729 B = 0.002460 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.706701 B =11379.425357 C =12090.154830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.104 0.896 4 N -0.736 5.736 5 C 0.536 3.464 6 O -0.514 6.514 7 C -0.154 4.154 8 S -0.059 6.059 9 C -0.535 4.535 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.867 5.867 13 Si 0.919 3.081 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.051 4.051 18 C -0.105 4.105 19 C -0.078 4.078 20 C -0.078 4.078 21 Cl -0.051 7.051 22 C 0.115 3.885 23 F -0.125 7.125 24 C -0.138 4.138 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.397 0.603 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.268 0.732 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.597 -6.422 24.708 25.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.077 3.923 3 H 0.122 0.878 4 N -0.392 5.392 5 C 0.322 3.678 6 O -0.387 6.387 7 C -0.305 4.305 8 S 0.167 5.833 9 C -0.683 4.683 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.052 4.052 18 C -0.124 4.124 19 C -0.096 4.096 20 C -0.105 4.105 21 Cl -0.022 7.022 22 C 0.095 3.905 23 F -0.104 7.104 24 C -0.157 4.157 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.232 0.768 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.031 -4.432 24.595 25.175 hybrid contribution 0.947 -2.961 -0.607 3.167 sum -2.084 -7.393 23.989 25.189 Atomic orbital electron populations 1.22198 0.93707 1.02639 1.03286 1.19781 0.94547 0.97041 0.80893 0.87778 1.46192 1.69706 1.13981 1.09280 1.20329 0.76620 0.87232 0.83617 1.90705 1.48013 1.15666 1.84363 1.23543 1.03790 1.04928 0.98240 1.85386 1.86512 1.12857 0.98504 1.22903 1.51056 0.98182 0.96180 0.90862 1.24997 0.95070 0.95560 0.97984 1.70025 1.45570 1.13278 1.21405 0.86112 0.78517 0.80141 0.80703 1.19607 1.20555 1.20558 1.20005 0.96483 0.92681 0.96039 1.21105 0.98311 1.01069 0.91921 1.20991 0.98196 0.91123 0.99320 1.21038 1.06178 0.93628 0.89700 1.98395 1.87096 1.79062 1.37693 1.17338 1.01529 0.77393 0.94267 1.91561 1.94067 1.28058 1.96688 1.20942 1.02376 0.94784 0.97589 0.92227 0.91450 0.90758 0.76773 0.89149 0.89124 0.92217 0.83777 0.83638 0.83662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.46 37.16 0.35 -1.18 16 2 C 0.18 1.88 2.77 -69.08 -0.19 1.69 16 3 H 0.10 1.19 7.44 -51.93 -0.39 0.81 16 4 N -0.74 -8.99 5.03 -54.93 -0.28 -9.26 16 5 C 0.54 9.33 7.81 -10.98 -0.09 9.25 16 6 O -0.51 -10.86 15.53 5.55 0.09 -10.78 16 7 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 8 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 9 C -0.53 -15.02 9.50 30.94 0.29 -14.73 16 10 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 11 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 12 N -0.87 -25.88 13.22 55.49 0.73 -25.14 16 13 Si 0.92 21.22 29.55 -169.99 -5.02 16.19 16 14 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 17 C -0.05 -0.43 4.95 -104.63 -0.52 -0.95 16 18 C -0.11 -0.75 9.67 -39.58 -0.38 -1.14 16 19 C -0.08 -0.54 9.83 -39.56 -0.39 -0.93 16 20 C -0.08 -0.68 6.33 -39.44 -0.25 -0.92 16 21 Cl -0.05 -0.44 28.62 -51.86 -1.48 -1.93 16 22 C 0.11 1.08 7.28 -39.39 -0.29 0.79 16 23 F -0.13 -1.31 16.84 2.25 0.04 -1.27 16 24 C -0.14 -1.16 9.03 -39.52 -0.36 -1.52 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.40 3.88 6.88 -40.82 -0.28 3.60 16 29 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 30 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 31 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.14 0.76 8.04 -52.49 -0.42 0.34 16 33 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 34 H 0.15 1.05 6.93 -52.49 -0.36 0.68 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -33.27 333.12 -8.34 -41.61 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -3.53 Total: -0.20 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -1.69 Total: -10.46 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.46 Total: -34.41 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.48 Total: -1.93 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.27 -8.34 -41.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116428642.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.519 kcal (2) G-P(sol) polarization free energy of solvation -33.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds