Wall clock time and date at job start Tue Mar 31 2020 11:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46641 * 2 1 4 4 N 1.46499 * 109.47070 * 239.99909 * 2 1 3 5 5 C 1.34777 * 120.00199 * 85.00207 * 4 2 1 6 6 O 1.21283 * 119.99750 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99928 * 180.27479 * 5 4 2 8 8 S 1.80999 * 109.46903 * 179.72354 * 7 5 4 9 9 C 1.76200 * 99.99730 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00351 * 0.02562 * 9 8 7 11 11 C 1.38796 * 120.00095 * 179.97438 * 9 8 7 12 12 N 1.31634 * 119.99941 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00384 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46990 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47522 * 119.99735 * 13 11 9 16 16 H 1.48500 * 109.47073 * 240.00101 * 13 11 9 17 17 C 1.50697 * 109.46811 * 119.99346 * 2 1 3 18 18 C 1.38264 * 119.97745 * 259.99990 * 17 2 1 19 19 C 1.38218 * 120.06316 * 180.02562 * 18 17 2 20 20 C 1.38322 * 120.00911 * 0.02562 * 19 18 17 21 21 Cl 1.73602 * 120.02569 * 180.02562 * 20 19 18 22 22 C 1.38545 * 119.95412 * 359.97438 * 20 19 18 23 23 F 1.35103 * 120.03577 * 180.02562 * 22 20 19 24 24 C 1.38201 * 119.97332 * 79.73227 * 17 2 1 25 25 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47598 * 300.00373 * 1 2 3 27 27 H 1.09005 * 109.47473 * 60.00264 * 1 2 3 28 28 H 0.97000 * 119.99484 * 264.99304 * 4 2 1 29 29 H 1.09004 * 109.46965 * 299.72211 * 7 5 4 30 30 H 1.08994 * 109.46990 * 59.72065 * 7 5 4 31 31 H 0.97002 * 120.00288 * 179.97438 * 12 11 9 32 32 H 1.07999 * 119.96995 * 359.97438 * 18 17 2 33 33 H 1.07996 * 119.99956 * 180.02562 * 19 18 17 34 34 H 1.07999 * 120.00570 * 359.97438 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1583 -2.4117 7 6 2.6435 -0.7303 -3.5891 8 16 2.6982 0.4311 -4.9762 9 6 3.2960 -0.6356 -6.2449 10 1 3.5060 -1.6719 -6.0247 11 6 3.4959 -0.1444 -7.5276 12 7 3.2385 1.1182 -7.7964 13 14 4.1289 -1.2754 -8.8728 14 1 4.3383 -2.6365 -8.3172 15 1 3.1360 -1.3376 -9.9752 16 1 5.4163 -0.7511 -9.3952 17 6 2.0322 -0.7103 1.2305 18 6 2.4586 0.0203 2.3243 19 6 2.9201 -0.6293 3.4536 20 6 2.9563 -2.0116 3.4904 21 17 3.5352 -2.8280 4.9089 22 6 2.5292 -2.7442 2.3948 23 9 2.5634 -4.0943 2.4291 24 6 2.0612 -2.0915 1.2670 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 2.2491 -1.6318 -1.1525 29 1 3.6436 -1.1225 -3.4039 30 1 1.9697 -1.5525 -3.8299 31 1 3.3785 1.4616 -8.6927 32 1 2.4318 1.0996 2.2958 33 1 3.2524 -0.0577 4.3075 34 1 1.7235 -2.6615 0.4141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116428642.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:27 Heat of formation + Delta-G solvation = -90.565053 kcal Electronic energy + Delta-G solvation = -20610.324945 eV Core-core repulsion = 16994.671557 eV Total energy + Delta-G solvation = -3615.653388 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -50.06411 -41.22196 -40.01324 -37.79080 -36.38567 -34.57824 -33.07873 -31.86152 -30.75780 -29.65460 -27.65362 -25.20177 -24.16768 -22.46043 -21.45277 -19.94511 -18.86591 -18.07610 -17.56594 -17.44914 -16.98610 -16.87543 -16.86769 -16.43309 -15.86388 -15.14259 -15.06368 -14.90431 -14.52166 -14.44113 -14.35519 -13.96792 -13.60638 -13.28446 -13.17540 -13.15168 -12.91243 -12.76166 -12.55918 -12.35032 -12.12229 -11.98756 -11.70182 -11.15359 -10.96994 -10.26801 -10.24939 -10.08371 -9.71704 -8.65114 -8.34499 -6.11705 -0.22216 -0.01018 0.92128 1.27564 1.41583 1.47412 1.58419 1.60830 2.15911 2.27619 2.40250 2.92049 2.99875 3.32263 3.36037 3.56331 3.93878 3.98608 4.02921 4.22071 4.32237 4.33741 4.47726 4.52317 4.61746 4.76445 4.84173 4.92979 4.97272 5.18817 5.27334 5.43014 5.49171 5.57088 6.20606 6.43707 7.07409 7.21015 8.74800 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.023729 B = 0.002460 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.706701 B =11379.425357 C =12090.154830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.184 3.816 3 H 0.094 0.906 4 N -0.713 5.713 5 C 0.540 3.460 6 O -0.557 6.557 7 C -0.133 4.133 8 S -0.147 6.147 9 C -0.545 4.545 10 H 0.082 0.918 11 C 0.013 3.987 12 N -0.911 5.911 13 Si 0.997 3.003 14 H -0.258 1.258 15 H -0.274 1.274 16 H -0.274 1.274 17 C -0.055 4.055 18 C -0.098 4.098 19 C -0.072 4.072 20 C -0.084 4.084 21 Cl -0.054 7.054 22 C 0.097 3.903 23 F -0.136 7.136 24 C -0.136 4.136 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.046 0.954 28 H 0.412 0.588 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.271 0.729 32 H 0.165 0.835 33 H 0.170 0.830 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.238 -7.886 25.915 27.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.080 3.920 3 H 0.112 0.888 4 N -0.368 5.368 5 C 0.326 3.674 6 O -0.434 6.434 7 C -0.284 4.284 8 S 0.080 5.920 9 C -0.693 4.693 10 H 0.100 0.900 11 C -0.191 4.191 12 N -0.547 5.547 13 Si 0.819 3.181 14 H -0.181 1.181 15 H -0.200 1.200 16 H -0.200 1.200 17 C -0.056 4.056 18 C -0.117 4.117 19 C -0.091 4.091 20 C -0.112 4.112 21 Cl -0.026 7.026 22 C 0.077 3.923 23 F -0.114 7.114 24 C -0.155 4.155 25 H 0.089 0.911 26 H 0.107 0.893 27 H 0.065 0.935 28 H 0.250 0.750 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.080 0.920 32 H 0.183 0.817 33 H 0.187 0.813 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.675 -5.940 25.851 26.659 hybrid contribution 0.811 -2.519 -0.810 2.767 sum -1.864 -8.459 25.041 26.497 Atomic orbital electron populations 1.22159 0.92989 1.03273 1.03011 1.19849 0.95078 0.96566 0.80518 0.88779 1.45953 1.67939 1.14524 1.08362 1.19964 0.76502 0.86580 0.84363 1.90697 1.50231 1.17420 1.85066 1.23396 1.05552 1.03332 0.96110 1.85529 1.86863 1.17147 1.02417 1.23232 1.50892 0.98470 0.96717 0.90016 1.26105 0.95102 0.97194 1.00748 1.70182 1.46895 1.15472 1.22166 0.84923 0.77839 0.78242 0.77059 1.18118 1.19955 1.19983 1.19802 0.97574 0.92605 0.95607 1.21361 0.96911 1.02139 0.91249 1.21251 0.97333 0.90516 0.99969 1.21251 1.06144 0.94335 0.89480 1.98396 1.87116 1.79268 1.37773 1.17501 1.02709 0.77108 0.94982 1.91533 1.94291 1.28818 1.96784 1.21010 1.02001 0.94818 0.97704 0.91125 0.89288 0.93473 0.75023 0.87376 0.87208 0.92002 0.81722 0.81292 0.82673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.46 71.98 0.68 -2.06 16 2 C 0.18 3.46 2.77 44.24 0.12 3.59 16 3 H 0.09 2.04 7.44 -2.38 -0.02 2.02 16 4 N -0.71 -16.18 5.03 -446.09 -2.24 -18.42 16 5 C 0.54 18.48 7.81 87.66 0.68 19.16 16 6 O -0.56 -23.88 15.53 -3.04 -0.05 -23.93 16 7 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 8 S -0.15 -7.95 20.57 -56.49 -1.16 -9.12 16 9 C -0.55 -30.71 9.50 67.95 0.65 -30.07 16 10 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 11 C 0.01 0.75 5.49 84.86 0.47 1.22 16 12 N -0.91 -55.37 13.22 21.65 0.29 -55.08 16 13 Si 1.00 43.26 29.55 68.60 2.03 45.29 16 14 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 15 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 17 C -0.05 -0.79 4.95 -19.87 -0.10 -0.89 16 18 C -0.10 -1.12 9.67 22.27 0.22 -0.90 16 19 C -0.07 -0.81 9.83 22.28 0.22 -0.59 16 20 C -0.08 -1.30 6.33 22.36 0.14 -1.16 16 21 Cl -0.05 -0.86 28.62 -2.72 -0.08 -0.94 16 22 C 0.10 1.65 7.28 22.39 0.16 1.81 16 23 F -0.14 -2.68 16.84 44.97 0.76 -1.92 16 24 C -0.14 -2.00 9.03 22.31 0.20 -1.80 16 25 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.41 7.02 6.88 -92.71 -0.64 6.38 16 29 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 30 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 31 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 32 H 0.17 1.19 8.04 -2.91 -0.02 1.17 16 33 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 34 H 0.16 1.86 6.93 -2.91 -0.02 1.84 16 Total: -1.00 -73.85 333.12 3.93 -69.92 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.51 Total: 10.50 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: 3.88 Total: -16.30 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -1.96 Total: -73.50 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.05 Total: -23.93 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.76 Total: -1.92 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.16 Total: -9.12 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -73.85 3.93 -69.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116428642.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.645 kcal (2) G-P(sol) polarization free energy of solvation -73.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds