Wall clock time and date at job start Tue Mar 31 2020 11:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99981 * 2 1 4 4 H 1.48506 * 109.46615 * 269.99676 * 3 2 1 5 5 H 1.48499 * 109.47201 * 29.99425 * 3 2 1 6 6 H 1.48489 * 109.46926 * 149.99494 * 3 2 1 7 7 C 1.37878 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99841 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00141 * 180.02562 * 7 2 1 10 10 C 1.50690 * 109.47304 * 180.02562 * 9 7 2 11 11 O 1.21283 * 119.99721 * 0.02562 * 10 9 7 12 12 N 1.34778 * 120.00232 * 179.97438 * 10 9 7 13 13 C 1.46500 * 120.00046 * 179.72733 * 12 10 9 14 14 C 1.52997 * 109.47089 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.47020 * 59.99853 * 14 13 12 16 16 O 1.42900 * 109.47083 * 299.99941 * 14 13 12 17 17 C 1.50703 * 109.47186 * 180.02562 * 14 13 12 18 18 C 1.38334 * 120.01053 * 251.45845 * 17 14 13 19 19 Cl 1.73600 * 120.00536 * 359.97438 * 18 17 14 20 20 C 1.38356 * 119.98630 * 179.79410 * 18 17 14 21 21 C 1.38217 * 120.01306 * 0.45625 * 20 18 17 22 22 C 1.38227 * 120.02702 * 359.79669 * 21 20 18 23 23 C 1.38331 * 120.01268 * 71.73137 * 17 14 13 24 24 Cl 1.73594 * 120.01055 * 0.02562 * 23 17 14 25 25 H 0.97003 * 120.00048 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46954 * 60.00265 * 9 7 2 27 27 H 1.08999 * 109.47104 * 300.01158 * 9 7 2 28 28 H 0.96996 * 119.99610 * 0.02562 * 12 10 9 29 29 H 1.08993 * 109.47302 * 300.00209 * 13 12 10 30 30 H 1.09001 * 109.46924 * 59.99852 * 13 12 10 31 31 H 0.96703 * 113.99946 * 310.93603 * 16 14 13 32 32 H 1.07998 * 119.99492 * 180.21160 * 20 18 17 33 33 H 1.08001 * 119.99351 * 179.77745 * 21 20 18 34 34 H 1.08004 * 119.99375 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6528 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0138 -2.6148 0.0010 11 8 3.2257 -3.5366 0.0000 12 7 5.3389 -2.8611 0.0009 13 6 5.8273 -4.2423 0.0068 14 6 7.3572 -4.2423 0.0061 15 1 7.7210 -3.7245 0.8936 16 8 7.8330 -3.5739 -1.1639 17 6 7.8596 -5.6631 0.0116 18 6 8.4499 -6.1839 1.1491 19 17 8.6128 -5.2007 2.5705 20 6 8.9071 -7.4898 1.1549 21 6 8.7826 -8.2709 0.0215 22 6 8.1975 -7.7494 -1.1172 23 6 7.7357 -6.4452 -1.1227 24 17 7.0020 -5.7901 -2.5531 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6801 0.8912 27 1 3.8752 -0.6803 -0.8887 28 1 5.9692 -2.1238 0.0013 29 1 5.4647 -4.7520 0.8994 30 1 5.4631 -4.7602 -0.8804 31 1 7.4180 -3.8736 -1.9843 32 1 9.3648 -7.8976 2.0440 33 1 9.1428 -9.2891 0.0252 34 1 8.1002 -8.3604 -2.0024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143202616.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:47 Heat of formation + Delta-G solvation = -72.509348 kcal Electronic energy + Delta-G solvation = -21423.048970 eV Core-core repulsion = 17793.762040 eV Total energy + Delta-G solvation = -3629.286930 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.46417 -38.81756 -37.49123 -37.11061 -36.72735 -33.79959 -32.81328 -32.20993 -31.14058 -29.90241 -27.94759 -24.42682 -23.38806 -22.66861 -21.75099 -19.67699 -18.17745 -17.20887 -16.90989 -16.87737 -16.18294 -15.30890 -15.22622 -15.15041 -14.84682 -14.48083 -14.14868 -14.08124 -13.89273 -13.03472 -12.99503 -12.70475 -12.43679 -12.31909 -12.19931 -12.10624 -11.59056 -11.39841 -11.35432 -10.84613 -10.77349 -10.53016 -10.44484 -9.95313 -9.36321 -9.23894 -9.23465 -8.78981 -8.59835 -8.52897 -6.00759 -4.00313 0.46740 0.49109 1.33626 1.78379 2.87389 3.29105 3.36178 3.37326 3.59544 3.60735 4.08200 4.22049 4.30966 4.40323 4.43403 4.61770 4.74175 4.84316 4.92979 5.07487 5.30003 5.45571 5.51240 5.66526 5.67328 5.86795 6.00174 6.16495 6.64786 6.90452 6.95038 7.31471 7.56888 8.14388 8.58848 9.10832 9.20411 9.57773 11.12240 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.003348 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.732408 B = 8361.077840 C = 8982.501291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.512 4.512 8 H 0.092 0.908 9 C -0.029 4.029 10 C 0.522 3.478 11 O -0.532 6.532 12 N -0.744 5.744 13 C 0.090 3.910 14 C 0.128 3.872 15 H 0.125 0.875 16 O -0.551 6.551 17 C -0.095 4.095 18 C -0.015 4.015 19 Cl -0.046 7.046 20 C -0.103 4.103 21 C -0.094 4.094 22 C -0.101 4.101 23 C -0.018 4.018 24 Cl -0.041 7.041 25 H 0.264 0.736 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.400 0.600 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.373 0.627 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.210 -16.123 -0.223 29.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.550 4.550 8 H 0.110 0.890 9 C -0.069 4.069 10 C 0.311 3.689 11 O -0.406 6.406 12 N -0.400 5.400 13 C -0.035 4.035 14 C 0.068 3.932 15 H 0.143 0.857 16 O -0.364 6.364 17 C -0.098 4.098 18 C -0.042 4.042 19 Cl -0.017 7.017 20 C -0.121 4.121 21 C -0.112 4.112 22 C -0.120 4.120 23 C -0.045 4.045 24 Cl -0.012 7.012 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.234 0.766 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.228 0.772 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 23.732 -16.221 0.181 28.746 hybrid contribution 0.342 1.016 -0.373 1.135 sum 24.074 -15.205 -0.191 28.474 Atomic orbital electron populations 1.69897 1.06180 1.26795 1.50781 1.24978 0.94799 0.98734 0.94794 0.86881 0.80344 0.84031 0.78582 1.20134 1.21154 1.19056 1.21004 0.87705 0.95694 1.50642 0.88998 1.19679 0.99589 0.88976 0.98610 1.21439 0.80136 0.93579 0.73743 1.90585 1.55118 1.46972 1.47969 1.46147 1.08257 1.06714 1.78844 1.21874 0.91620 0.86454 1.03572 1.21212 0.93247 0.87482 0.91224 0.85743 1.86635 1.67914 1.64802 1.17005 1.20141 0.99865 0.97915 0.91850 1.20637 1.01778 0.93045 0.88712 1.98405 1.96295 1.69821 1.37192 1.21204 0.99408 0.91715 0.99807 1.21127 0.98153 1.00350 0.91579 1.21192 0.97718 0.93199 0.99892 1.20633 1.00959 0.94419 0.88468 1.98352 1.80920 1.84613 1.37282 0.92620 0.93528 0.93945 0.76599 0.90785 0.90898 0.77177 0.83886 0.83738 0.83854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.87 21.21 27.47 -169.99 -4.67 16.54 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 7 C -0.51 -15.25 9.48 -34.44 -0.33 -15.57 16 8 H 0.09 3.10 7.00 -52.49 -0.37 2.73 16 9 C -0.03 -0.69 4.53 -29.04 -0.13 -0.82 16 10 C 0.52 11.74 7.82 -10.99 -0.09 11.66 16 11 O -0.53 -14.06 15.46 5.55 0.09 -13.98 16 12 N -0.74 -12.66 5.45 -60.30 -0.33 -12.98 16 13 C 0.09 1.34 5.08 -4.04 -0.02 1.32 16 14 C 0.13 1.56 3.00 -27.88 -0.08 1.48 16 15 H 0.13 1.47 6.29 -51.93 -0.33 1.14 16 16 O -0.55 -7.04 12.87 -35.23 -0.45 -7.49 16 17 C -0.10 -1.03 4.98 -104.55 -0.52 -1.55 16 18 C -0.01 -0.14 6.31 -39.50 -0.25 -0.39 16 19 Cl -0.05 -0.44 27.05 -51.86 -1.40 -1.84 16 20 C -0.10 -0.72 9.83 -39.55 -0.39 -1.11 16 21 C -0.09 -0.56 10.04 -39.59 -0.40 -0.96 16 22 C -0.10 -0.74 9.83 -39.54 -0.39 -1.13 16 23 C -0.02 -0.17 6.15 -39.50 -0.24 -0.42 16 24 Cl -0.04 -0.42 23.27 -51.86 -1.21 -1.62 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.05 1.06 7.20 -51.93 -0.37 0.69 16 27 H 0.04 0.96 7.57 -51.93 -0.39 0.56 16 28 H 0.40 5.84 8.35 -40.82 -0.34 5.50 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.13 6.28 -51.93 -0.33 0.80 16 31 H 0.37 4.47 5.27 45.56 0.24 4.71 16 32 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 34 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 LS Contribution 317.37 15.07 4.78 4.78 Total: -1.00 -35.00 317.37 -8.10 -43.10 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -2.75 Total: 6.52 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.93 Total: -5.57 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.45 Total: -40.43 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.37 Total: -21.47 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -2.61 Total: -3.47 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.00 -8.10 -43.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143202616.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.410 kcal (2) G-P(sol) polarization free energy of solvation -35.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds