Wall clock time and date at job start Tue Mar 31 2020 11:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99981 * 2 1 4 4 H 1.48506 * 109.46615 * 269.99676 * 3 2 1 5 5 H 1.48499 * 109.47201 * 29.99425 * 3 2 1 6 6 H 1.48489 * 109.46926 * 149.99494 * 3 2 1 7 7 C 1.37878 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99841 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00141 * 180.02562 * 7 2 1 10 10 C 1.50690 * 109.47304 * 180.02562 * 9 7 2 11 11 O 1.21283 * 119.99721 * 0.02562 * 10 9 7 12 12 N 1.34778 * 120.00232 * 179.97438 * 10 9 7 13 13 C 1.46500 * 120.00046 * 179.72733 * 12 10 9 14 14 C 1.52997 * 109.47089 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.47020 * 59.99853 * 14 13 12 16 16 O 1.42900 * 109.47083 * 299.99941 * 14 13 12 17 17 C 1.50703 * 109.47186 * 180.02562 * 14 13 12 18 18 C 1.38334 * 120.01053 * 251.45845 * 17 14 13 19 19 Cl 1.73600 * 120.00536 * 359.97438 * 18 17 14 20 20 C 1.38356 * 119.98630 * 179.79410 * 18 17 14 21 21 C 1.38217 * 120.01306 * 0.45625 * 20 18 17 22 22 C 1.38227 * 120.02702 * 359.79669 * 21 20 18 23 23 C 1.38331 * 120.01268 * 71.73137 * 17 14 13 24 24 Cl 1.73594 * 120.01055 * 0.02562 * 23 17 14 25 25 H 0.97003 * 120.00048 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46954 * 60.00265 * 9 7 2 27 27 H 1.08999 * 109.47104 * 300.01158 * 9 7 2 28 28 H 0.96996 * 119.99610 * 0.02562 * 12 10 9 29 29 H 1.08993 * 109.47302 * 300.00209 * 13 12 10 30 30 H 1.09001 * 109.46924 * 59.99852 * 13 12 10 31 31 H 0.96703 * 113.99946 * 310.93603 * 16 14 13 32 32 H 1.07998 * 119.99492 * 180.21160 * 20 18 17 33 33 H 1.08001 * 119.99351 * 179.77745 * 21 20 18 34 34 H 1.08004 * 119.99375 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6528 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0138 -2.6148 0.0010 11 8 3.2257 -3.5366 0.0000 12 7 5.3389 -2.8611 0.0009 13 6 5.8273 -4.2423 0.0068 14 6 7.3572 -4.2423 0.0061 15 1 7.7210 -3.7245 0.8936 16 8 7.8330 -3.5739 -1.1639 17 6 7.8596 -5.6631 0.0116 18 6 8.4499 -6.1839 1.1491 19 17 8.6128 -5.2007 2.5705 20 6 8.9071 -7.4898 1.1549 21 6 8.7826 -8.2709 0.0215 22 6 8.1975 -7.7494 -1.1172 23 6 7.7357 -6.4452 -1.1227 24 17 7.0020 -5.7901 -2.5531 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6801 0.8912 27 1 3.8752 -0.6803 -0.8887 28 1 5.9692 -2.1238 0.0013 29 1 5.4647 -4.7520 0.8994 30 1 5.4631 -4.7602 -0.8804 31 1 7.4180 -3.8736 -1.9843 32 1 9.3648 -7.8976 2.0440 33 1 9.1428 -9.2891 0.0252 34 1 8.1002 -8.3604 -2.0024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143202616.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:46 Heat of formation + Delta-G solvation = -98.960031 kcal Electronic energy + Delta-G solvation = -21424.195958 eV Core-core repulsion = 17793.762040 eV Total energy + Delta-G solvation = -3630.433918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.28022 -40.37487 -38.42996 -37.93180 -37.43975 -35.29630 -35.01098 -33.06175 -31.82806 -31.73788 -29.19072 -25.80524 -24.38754 -23.89784 -22.64338 -21.35477 -19.10009 -18.92612 -18.23476 -17.74329 -17.45277 -16.77963 -16.41771 -16.28280 -15.97771 -15.50385 -15.44184 -15.30536 -14.88449 -14.75380 -14.13773 -14.04594 -13.50513 -13.42734 -13.19159 -13.09938 -12.80794 -12.76924 -12.39627 -12.22615 -12.10602 -11.88192 -11.74457 -11.53739 -11.34351 -10.79113 -10.65895 -10.13312 -9.99829 -9.85995 -8.26412 -6.34942 -0.16093 -0.12751 0.64539 1.10084 1.40042 1.43760 1.54386 1.81186 2.15202 2.36231 2.38531 3.06884 3.19323 3.36387 3.47478 3.66475 3.85463 4.03774 4.14160 4.24408 4.27822 4.39026 4.55981 4.64776 4.72523 4.98733 5.00447 5.05313 5.13366 5.40765 5.47470 5.49860 6.23806 6.34630 6.63602 6.83352 7.24981 7.44195 8.91129 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.003348 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.732408 B = 8361.077840 C = 8982.501291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.231 1.231 7 C -0.534 4.534 8 H 0.029 0.971 9 C -0.028 4.028 10 C 0.522 3.478 11 O -0.583 6.583 12 N -0.720 5.720 13 C 0.090 3.910 14 C 0.140 3.860 15 H 0.129 0.871 16 O -0.558 6.558 17 C -0.119 4.119 18 C -0.027 4.027 19 Cl -0.054 7.054 20 C -0.100 4.100 21 C -0.079 4.079 22 C -0.102 4.102 23 C -0.034 4.034 24 Cl -0.054 7.054 25 H 0.268 0.732 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.415 0.585 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.375 0.625 32 H 0.168 0.832 33 H 0.184 0.816 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.693 -16.114 -0.036 32.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.782 3.218 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.153 1.153 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.067 4.067 10 C 0.311 3.689 11 O -0.462 6.462 12 N -0.374 5.374 13 C -0.035 4.035 14 C 0.080 3.920 15 H 0.146 0.854 16 O -0.371 6.371 17 C -0.121 4.121 18 C -0.054 4.054 19 Cl -0.025 7.025 20 C -0.119 4.119 21 C -0.097 4.097 22 C -0.120 4.120 23 C -0.061 4.061 24 Cl -0.025 7.025 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.253 0.747 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.231 0.769 32 H 0.185 0.815 33 H 0.201 0.799 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 27.288 -16.223 0.367 31.748 hybrid contribution -0.749 0.830 -0.427 1.197 sum 26.539 -15.392 -0.060 30.680 Atomic orbital electron populations 1.70091 1.08752 1.28418 1.52063 1.26128 0.95791 1.03835 0.93662 0.85540 0.79799 0.76892 0.79613 1.18664 1.21069 1.15337 1.21166 0.90919 0.93755 1.51428 0.95241 1.19606 0.95868 0.90644 1.00623 1.21212 0.81510 0.92583 0.73614 1.90573 1.56879 1.48051 1.50688 1.45811 1.06608 1.08520 1.76499 1.21999 0.93924 0.84632 1.02917 1.21046 0.90768 0.89041 0.91148 0.85353 1.86613 1.67969 1.65196 1.17305 1.20013 1.01855 0.97205 0.93064 1.20818 1.02453 0.94014 0.88082 1.98399 1.96354 1.70261 1.37472 1.21585 0.98452 0.90668 1.01173 1.21608 0.96163 1.01688 0.90225 1.21556 0.96849 0.92278 1.01325 1.20841 1.01862 0.95497 0.87859 1.98343 1.81286 1.84920 1.37965 0.92283 0.91106 0.91318 0.74749 0.91571 0.91517 0.76871 0.81458 0.79889 0.81746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.90 13.96 21.45 0.30 -61.61 16 2 C 0.00 0.13 5.47 84.66 0.46 0.60 16 3 Si 0.96 42.89 27.47 68.60 1.88 44.78 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.23 -8.95 6.54 99.48 0.65 -8.29 16 7 C -0.53 -32.82 9.48 25.60 0.24 -32.58 16 8 H 0.03 2.12 7.00 -2.91 -0.02 2.10 16 9 C -0.03 -1.31 4.53 29.10 0.13 -1.18 16 10 C 0.52 23.67 7.82 87.65 0.69 24.35 16 11 O -0.58 -32.22 15.46 -3.04 -0.05 -32.27 16 12 N -0.72 -23.94 5.45 -463.08 -2.52 -26.46 16 13 C 0.09 2.67 5.08 86.38 0.44 3.11 16 14 C 0.14 3.29 3.00 29.85 0.09 3.38 16 15 H 0.13 2.89 6.29 -2.39 -0.02 2.87 16 16 O -0.56 -13.67 12.87 -148.98 -1.92 -15.59 16 17 C -0.12 -2.43 4.98 -19.82 -0.10 -2.53 16 18 C -0.03 -0.46 6.31 22.32 0.14 -0.32 16 19 Cl -0.05 -0.96 27.05 -2.72 -0.07 -1.04 16 20 C -0.10 -1.11 9.83 22.29 0.22 -0.89 16 21 C -0.08 -0.64 10.04 22.26 0.22 -0.42 16 22 C -0.10 -1.22 9.83 22.30 0.22 -1.00 16 23 C -0.03 -0.62 6.15 22.32 0.14 -0.48 16 24 Cl -0.05 -1.09 23.27 -2.72 -0.06 -1.15 16 25 H 0.27 16.04 8.31 -92.71 -0.77 15.26 16 26 H 0.07 3.02 7.20 -2.39 -0.02 3.00 16 27 H 0.07 2.90 7.57 -2.39 -0.02 2.89 16 28 H 0.42 11.29 8.35 -92.71 -0.77 10.51 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.07 2.10 6.28 -2.39 -0.01 2.09 16 31 H 0.38 8.76 5.27 -74.06 -0.39 8.37 16 32 H 0.17 1.00 8.06 -2.91 -0.02 0.97 16 33 H 0.18 0.09 8.06 -2.91 -0.02 0.07 16 34 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -80.90 317.37 0.41 -80.49 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -0.05 Total: 20.78 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 2.89 Total: -7.95 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -2.22 Total: -88.06 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -1.96 Total: -47.86 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.88 Total: 44.78 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -0.14 Total: -2.19 kcal Total: -80.90 0.41 -80.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143202616.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.465 kcal (2) G-P(sol) polarization free energy of solvation -80.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds