Wall clock time and date at job start Tue Mar 31 2020 11:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00032 * 2 1 4 4 H 1.48497 * 109.47269 * 270.00368 * 3 2 1 5 5 H 1.48500 * 109.46970 * 30.00226 * 3 2 1 6 6 H 1.48497 * 109.47063 * 149.99873 * 3 2 1 7 7 C 1.37872 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00395 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47344 * 180.02562 * 9 7 2 11 11 O 1.21275 * 119.99984 * 359.97438 * 10 9 7 12 12 N 1.34776 * 120.00273 * 180.02562 * 10 9 7 13 13 C 1.46494 * 120.00255 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47357 * 180.02562 * 13 12 10 15 15 H 1.08996 * 109.47223 * 305.00398 * 14 13 12 16 16 O 1.42902 * 109.47246 * 65.00259 * 14 13 12 17 17 C 1.50702 * 109.47519 * 185.00145 * 14 13 12 18 18 C 1.38332 * 120.01277 * 288.13311 * 17 14 13 19 19 Cl 1.73599 * 120.00657 * 359.95347 * 18 17 14 20 20 C 1.38354 * 119.98921 * 179.97438 * 18 17 14 21 21 C 1.38222 * 120.01051 * 0.25776 * 20 18 17 22 22 C 1.38222 * 120.02872 * 359.48666 * 21 20 18 23 23 C 1.38325 * 120.01226 * 108.10922 * 17 14 13 24 24 Cl 1.73595 * 120.00884 * 0.02562 * 23 17 14 25 25 H 0.97000 * 119.99618 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47138 * 60.00157 * 9 7 2 27 27 H 1.09005 * 109.47275 * 300.00634 * 9 7 2 28 28 H 0.97008 * 119.99659 * 0.02562 * 12 10 9 29 29 H 1.08998 * 109.47198 * 60.00283 * 13 12 10 30 30 H 1.08997 * 109.47107 * 300.00410 * 13 12 10 31 31 H 0.96703 * 114.00051 * 48.53457 * 16 14 13 32 32 H 1.07996 * 119.99954 * 179.97438 * 20 18 17 33 33 H 1.08004 * 119.99069 * 179.74297 * 21 20 18 34 34 H 1.07998 * 119.99943 * 180.23142 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 8 3.4226 -3.4230 -0.0010 12 7 1.7811 -4.9153 -0.0011 13 6 2.7330 -6.0288 -0.0016 14 6 1.9680 -7.3538 -0.0028 15 1 1.2756 -7.3743 0.8388 16 8 1.2371 -7.4808 -1.2241 17 6 2.9425 -8.4967 0.1205 18 6 3.7592 -8.8277 -0.9458 19 17 3.6608 -7.9275 -2.4269 20 6 4.6541 -9.8768 -0.8319 21 6 4.7284 -10.5973 0.3453 22 6 3.9165 -10.2637 1.4129 23 6 3.0211 -9.2147 1.3002 24 17 1.9967 -8.8001 2.6389 25 1 -0.4849 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 0.8273 -5.0925 -0.0018 29 1 3.3597 -5.9715 0.8883 30 1 3.3596 -5.9706 -0.8916 31 1 1.7600 -7.2966 -2.0165 32 1 5.2914 -10.1356 -1.6645 33 1 5.4242 -11.4188 0.4324 34 1 3.9776 -10.8246 2.3338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143202617.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:50 Heat of formation + Delta-G solvation = -77.868850 kcal Electronic energy + Delta-G solvation = -21367.182835 eV Core-core repulsion = 17737.663500 eV Total energy + Delta-G solvation = -3629.519335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.41976 -38.70328 -37.43926 -37.05939 -36.68840 -33.73010 -32.88892 -32.15018 -31.10981 -29.35976 -27.67243 -24.40809 -23.38320 -22.90042 -21.73301 -19.66546 -18.12551 -17.17552 -16.83610 -16.33344 -16.18671 -15.29469 -15.08767 -15.05756 -14.81439 -14.54169 -14.10768 -14.01976 -13.89897 -12.97023 -12.75429 -12.57628 -12.37120 -12.23720 -12.10822 -12.03524 -11.53523 -11.33568 -11.10789 -10.79403 -10.74479 -10.57768 -10.38631 -9.92865 -9.32719 -9.23965 -9.20376 -8.64310 -8.49655 -8.38069 -6.02659 -4.02101 0.49720 0.52508 1.37173 1.81961 2.90672 3.36973 3.41993 3.48844 3.68658 3.73483 4.14995 4.25603 4.34079 4.43867 4.53737 4.65406 4.79312 4.87299 4.98435 5.11397 5.35460 5.49469 5.54125 5.69096 5.74171 5.92406 6.03243 6.37034 7.00223 7.22507 7.36809 7.37707 7.98761 8.08186 8.46343 9.08698 9.24554 9.62755 11.09754 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.020045 B = 0.003188 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.545125 B = 8781.203903 C = 9420.206258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.508 4.508 8 H 0.075 0.925 9 C 0.006 3.994 10 C 0.515 3.485 11 O -0.546 6.546 12 N -0.743 5.743 13 C 0.091 3.909 14 C 0.128 3.872 15 H 0.125 0.875 16 O -0.550 6.550 17 C -0.094 4.094 18 C -0.018 4.018 19 Cl -0.042 7.042 20 C -0.102 4.102 21 C -0.094 4.094 22 C -0.103 4.103 23 C -0.015 4.015 24 Cl -0.046 7.046 25 H 0.261 0.739 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.400 0.600 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.372 0.628 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.203 -26.151 0.359 26.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.729 3.271 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.546 4.546 8 H 0.093 0.907 9 C -0.033 4.033 10 C 0.305 3.695 11 O -0.422 6.422 12 N -0.399 5.399 13 C -0.034 4.034 14 C 0.068 3.932 15 H 0.143 0.857 16 O -0.363 6.363 17 C -0.097 4.097 18 C -0.045 4.045 19 Cl -0.013 7.013 20 C -0.120 4.120 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.042 4.042 24 Cl -0.016 7.016 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.235 0.765 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.228 0.772 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.365 -25.861 0.730 26.643 hybrid contribution 0.329 0.927 -0.353 1.045 sum 6.694 -24.934 0.378 25.820 Atomic orbital electron populations 1.69966 1.06022 1.26868 1.51189 1.25009 0.94909 0.99457 0.95266 0.86432 0.79848 0.82679 0.78145 1.20629 1.21283 1.19682 1.21169 0.94252 0.89130 1.50057 0.90706 1.19240 0.94129 0.90400 0.99581 1.22055 0.91140 0.83218 0.73065 1.90533 1.18048 1.84623 1.48994 1.46213 1.09529 1.05416 1.78714 1.21859 0.92934 0.85346 1.03302 1.21216 0.92335 0.89689 0.89946 0.85726 1.86645 1.41574 1.92491 1.15555 1.20164 0.98397 0.99105 0.92009 1.20626 0.99083 0.96480 0.88271 1.98350 1.96162 1.73729 1.33030 1.21178 0.97657 0.93939 0.99269 1.21119 0.98779 0.99602 0.91786 1.21206 0.94730 0.95939 1.00274 1.20645 0.96511 0.97618 0.89442 1.98407 1.66374 1.92929 1.43924 0.92925 0.93344 0.93378 0.76529 0.90995 0.91060 0.77247 0.83895 0.83773 0.83905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 22.41 29.54 -169.99 -5.02 17.39 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.51 -14.97 8.92 -34.44 -0.31 -15.28 16 8 H 0.07 2.30 6.75 -52.49 -0.35 1.94 16 9 C 0.01 0.15 5.46 -29.04 -0.16 -0.01 16 10 C 0.52 12.01 7.82 -10.99 -0.09 11.93 16 11 O -0.55 -14.49 15.46 5.56 0.09 -14.41 16 12 N -0.74 -13.35 5.50 -60.30 -0.33 -13.68 16 13 C 0.09 1.41 5.04 -4.05 -0.02 1.39 16 14 C 0.13 1.64 2.94 -27.88 -0.08 1.56 16 15 H 0.13 1.56 6.30 -51.93 -0.33 1.23 16 16 O -0.55 -7.42 13.05 -35.23 -0.46 -7.88 16 17 C -0.09 -1.06 4.98 -104.55 -0.52 -1.58 16 18 C -0.02 -0.18 6.16 -39.50 -0.24 -0.42 16 19 Cl -0.04 -0.44 23.29 -51.86 -1.21 -1.65 16 20 C -0.10 -0.77 9.83 -39.54 -0.39 -1.16 16 21 C -0.09 -0.59 10.04 -39.59 -0.40 -0.98 16 22 C -0.10 -0.76 9.83 -39.54 -0.39 -1.14 16 23 C -0.01 -0.15 6.31 -39.50 -0.25 -0.40 16 24 Cl -0.05 -0.46 27.05 -51.86 -1.40 -1.86 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.40 6.37 8.47 -40.82 -0.35 6.02 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.14 6.34 -51.93 -0.33 0.81 16 31 H 0.37 4.68 5.28 45.56 0.24 4.92 16 32 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 34 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 321.33 15.07 4.84 4.84 Total: -1.00 -33.74 321.33 -8.49 -42.23 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -2.79 Total: 5.66 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -2.94 Total: -4.62 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.40 Total: -39.70 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.37 Total: -22.29 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -2.61 Total: -3.51 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.74 -8.49 -42.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143202617.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.642 kcal (2) G-P(sol) polarization free energy of solvation -33.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds