Wall clock time and date at job start Tue Mar 31 2020 11:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00032 * 2 1 4 4 H 1.48497 * 109.47269 * 270.00368 * 3 2 1 5 5 H 1.48500 * 109.46970 * 30.00226 * 3 2 1 6 6 H 1.48497 * 109.47063 * 149.99873 * 3 2 1 7 7 C 1.37872 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00395 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47344 * 180.02562 * 9 7 2 11 11 O 1.21275 * 119.99984 * 359.97438 * 10 9 7 12 12 N 1.34776 * 120.00273 * 180.02562 * 10 9 7 13 13 C 1.46494 * 120.00255 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47357 * 180.02562 * 13 12 10 15 15 H 1.08996 * 109.47223 * 305.00398 * 14 13 12 16 16 O 1.42902 * 109.47246 * 65.00259 * 14 13 12 17 17 C 1.50702 * 109.47519 * 185.00145 * 14 13 12 18 18 C 1.38332 * 120.01277 * 288.13311 * 17 14 13 19 19 Cl 1.73599 * 120.00657 * 359.95347 * 18 17 14 20 20 C 1.38354 * 119.98921 * 179.97438 * 18 17 14 21 21 C 1.38222 * 120.01051 * 0.25776 * 20 18 17 22 22 C 1.38222 * 120.02872 * 359.48666 * 21 20 18 23 23 C 1.38325 * 120.01226 * 108.10922 * 17 14 13 24 24 Cl 1.73595 * 120.00884 * 0.02562 * 23 17 14 25 25 H 0.97000 * 119.99618 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47138 * 60.00157 * 9 7 2 27 27 H 1.09005 * 109.47275 * 300.00634 * 9 7 2 28 28 H 0.97008 * 119.99659 * 0.02562 * 12 10 9 29 29 H 1.08998 * 109.47198 * 60.00283 * 13 12 10 30 30 H 1.08997 * 109.47107 * 300.00410 * 13 12 10 31 31 H 0.96703 * 114.00051 * 48.53457 * 16 14 13 32 32 H 1.07996 * 119.99954 * 179.97438 * 20 18 17 33 33 H 1.08004 * 119.99069 * 179.74297 * 21 20 18 34 34 H 1.07998 * 119.99943 * 180.23142 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 8 3.4226 -3.4230 -0.0010 12 7 1.7811 -4.9153 -0.0011 13 6 2.7330 -6.0288 -0.0016 14 6 1.9680 -7.3538 -0.0028 15 1 1.2756 -7.3743 0.8388 16 8 1.2371 -7.4808 -1.2241 17 6 2.9425 -8.4967 0.1205 18 6 3.7592 -8.8277 -0.9458 19 17 3.6608 -7.9275 -2.4269 20 6 4.6541 -9.8768 -0.8319 21 6 4.7284 -10.5973 0.3453 22 6 3.9165 -10.2637 1.4129 23 6 3.0211 -9.2147 1.3002 24 17 1.9967 -8.8001 2.6389 25 1 -0.4849 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 0.8273 -5.0925 -0.0018 29 1 3.3597 -5.9715 0.8883 30 1 3.3596 -5.9706 -0.8916 31 1 1.7600 -7.2966 -2.0165 32 1 5.2914 -10.1356 -1.6645 33 1 5.4242 -11.4188 0.4324 34 1 3.9776 -10.8246 2.3338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143202617.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:49 Heat of formation + Delta-G solvation = -101.686532 kcal Electronic energy + Delta-G solvation = -21368.215647 eV Core-core repulsion = 17737.663500 eV Total energy + Delta-G solvation = -3630.552148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.26868 -40.33433 -38.42404 -37.92757 -37.43685 -35.30509 -35.08479 -33.03108 -31.73804 -31.25850 -29.05285 -25.96567 -24.56130 -23.92147 -22.65562 -21.40150 -19.00499 -18.51828 -18.24289 -17.74352 -17.46871 -16.73093 -16.40638 -16.36651 -16.04877 -15.49383 -15.40951 -15.24323 -14.89312 -14.46246 -14.16003 -14.02127 -13.43565 -13.40191 -13.18541 -13.03512 -12.80329 -12.76649 -12.56504 -12.22521 -12.10450 -12.05238 -11.76183 -11.46228 -11.35195 -10.63379 -10.59785 -10.11852 -9.98509 -9.85788 -8.25488 -6.33160 -0.15762 -0.12514 0.65076 1.10430 1.39963 1.41090 1.53718 1.83631 2.16943 2.34336 2.46972 3.09675 3.19571 3.35545 3.47264 3.66865 3.85890 4.03994 4.14422 4.28230 4.29960 4.38406 4.56880 4.66826 4.99188 5.00780 5.06978 5.13425 5.24805 5.43054 5.50309 5.72631 6.03479 6.34843 6.64618 6.81616 7.32003 7.45460 8.86774 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.020045 B = 0.003188 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.545125 B = 8781.203903 C = 9420.206258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.056 0.944 9 C 0.008 3.992 10 C 0.520 3.480 11 O -0.582 6.582 12 N -0.723 5.723 13 C 0.092 3.908 14 C 0.138 3.862 15 H 0.126 0.874 16 O -0.559 6.559 17 C -0.118 4.118 18 C -0.033 4.033 19 Cl -0.054 7.054 20 C -0.101 4.101 21 C -0.078 4.078 22 C -0.100 4.100 23 C -0.027 4.027 24 Cl -0.055 7.055 25 H 0.268 0.732 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.412 0.588 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.375 0.625 32 H 0.166 0.834 33 H 0.185 0.815 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.283 -27.792 0.584 28.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.790 3.210 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.576 4.576 8 H 0.074 0.926 9 C -0.031 4.031 10 C 0.310 3.690 11 O -0.462 6.462 12 N -0.377 5.377 13 C -0.032 4.032 14 C 0.079 3.921 15 H 0.144 0.856 16 O -0.372 6.372 17 C -0.121 4.121 18 C -0.060 4.060 19 Cl -0.025 7.025 20 C -0.119 4.119 21 C -0.096 4.096 22 C -0.118 4.118 23 C -0.054 4.054 24 Cl -0.026 7.026 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.248 0.752 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.231 0.769 32 H 0.184 0.816 33 H 0.202 0.798 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 7.408 -27.548 0.950 28.543 hybrid contribution 0.003 1.304 -0.413 1.367 sum 7.411 -26.245 0.538 27.276 Atomic orbital electron populations 1.70041 1.07171 1.28121 1.51109 1.25812 0.95866 1.02805 0.94442 0.85435 0.78464 0.78471 0.78604 1.19628 1.19817 1.19833 1.21368 0.93706 0.91195 1.51298 0.92593 1.19081 0.94257 0.90813 0.98945 1.21495 0.89939 0.84376 0.73238 1.90509 1.19093 1.85440 1.51112 1.45903 1.10711 1.04566 1.76475 1.22002 0.92631 0.85715 1.02883 1.21043 0.92469 0.88928 0.89689 0.85638 1.86623 1.42136 1.92523 1.15949 1.19997 0.99266 0.99460 0.93356 1.20834 1.00065 0.97475 0.87626 1.98341 1.96206 1.74251 1.33743 1.21553 0.96882 0.92830 1.00633 1.21614 0.98109 0.99554 0.90355 1.21590 0.93632 0.94916 1.01697 1.20830 0.97297 0.98559 0.88764 1.98401 1.66851 1.93122 1.44247 0.92363 0.93940 0.93892 0.75170 0.91499 0.91371 0.76886 0.81630 0.79789 0.81442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.06 13.29 21.45 0.28 -54.78 16 2 C 0.01 0.55 5.46 84.65 0.46 1.01 16 3 Si 0.97 46.01 29.54 68.60 2.03 48.04 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 7 C -0.54 -32.40 8.92 25.60 0.23 -32.18 16 8 H 0.06 3.53 6.75 -2.91 -0.02 3.51 16 9 C 0.01 0.45 5.46 29.10 0.16 0.61 16 10 C 0.52 24.84 7.82 87.66 0.69 25.53 16 11 O -0.58 -31.71 15.46 -3.01 -0.05 -31.76 16 12 N -0.72 -26.30 5.50 -463.09 -2.55 -28.85 16 13 C 0.09 2.88 5.04 86.38 0.44 3.32 16 14 C 0.14 3.53 2.94 29.85 0.09 3.61 16 15 H 0.13 3.13 6.30 -2.39 -0.02 3.12 16 16 O -0.56 -15.02 13.05 -148.98 -1.94 -16.97 16 17 C -0.12 -2.55 4.98 -19.82 -0.10 -2.65 16 18 C -0.03 -0.63 6.16 22.32 0.14 -0.49 16 19 Cl -0.05 -1.12 23.29 -2.72 -0.06 -1.18 16 20 C -0.10 -1.23 9.83 22.29 0.22 -1.01 16 21 C -0.08 -0.66 10.04 22.26 0.22 -0.44 16 22 C -0.10 -1.16 9.83 22.30 0.22 -0.95 16 23 C -0.03 -0.50 6.31 22.32 0.14 -0.36 16 24 Cl -0.06 -1.07 27.05 -2.72 -0.07 -1.14 16 25 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 26 H 0.04 2.29 8.14 -2.38 -0.02 2.27 16 27 H 0.04 2.31 8.14 -2.38 -0.02 2.29 16 28 H 0.41 13.17 8.47 -92.70 -0.79 12.39 16 29 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.07 2.22 6.34 -2.39 -0.02 2.20 16 31 H 0.38 9.47 5.28 -74.05 -0.39 9.08 16 32 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 33 H 0.18 0.11 8.06 -2.91 -0.02 0.09 16 34 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -73.32 321.33 0.53 -72.79 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.00 Total: 17.84 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 2.90 Total: -3.99 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -2.26 Total: -83.63 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: -1.99 Total: -48.73 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.14 Total: -2.32 kcal Total: -73.32 0.53 -72.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143202617.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.895 kcal (2) G-P(sol) polarization free energy of solvation -73.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds