Wall clock time and date at job start Tue Mar 31 2020 10:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36887 * 119.99655 * 2 1 4 4 H 1.08000 * 119.99398 * 187.79295 * 3 2 1 5 5 C 1.39034 * 120.00286 * 7.79282 * 3 2 1 6 6 N 1.31364 * 119.99972 * 7.89709 * 5 3 2 7 7 Si 1.86797 * 120.00047 * 187.90443 * 5 3 2 8 8 H 1.48496 * 109.47063 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.47574 * 119.99483 * 7 5 3 10 10 H 1.48504 * 109.47073 * 239.99933 * 7 5 3 11 11 C 1.34772 * 119.99907 * 179.97438 * 2 1 3 12 12 O 1.21600 * 120.00148 * 183.74346 * 11 2 1 13 13 C 1.47648 * 120.00216 * 3.75362 * 11 2 1 14 14 C 1.39696 * 120.15719 * 305.61541 * 13 11 2 15 15 C 1.37884 * 119.85927 * 180.25468 * 14 13 11 16 16 C 1.38433 * 120.18819 * 0.02562 * 15 14 13 17 17 S 1.76196 * 119.83801 * 179.97438 * 16 15 14 18 18 C 1.81398 * 104.45415 * 270.02206 * 17 16 15 19 19 O 1.42102 * 104.27419 * 26.09527 * 17 16 15 20 20 O 1.42097 * 104.28047 * 153.94790 * 17 16 15 21 21 C 1.38287 * 120.32883 * 359.97438 * 16 15 14 22 22 C 1.38132 * 120.14074 * 359.97438 * 21 16 15 23 23 Cl 1.73593 * 120.10049 * 179.97438 * 22 21 16 24 24 H 1.08997 * 109.47166 * 174.14481 * 1 2 3 25 25 H 1.08998 * 109.47280 * 294.14939 * 1 2 3 26 26 H 1.09005 * 109.46923 * 54.15037 * 1 2 3 27 27 H 0.96998 * 120.00226 * 180.02562 * 6 5 3 28 28 H 1.07999 * 120.07434 * 0.25184 * 14 13 11 29 29 H 1.07998 * 119.90754 * 179.97438 * 15 14 13 30 30 H 1.09001 * 109.46801 * 59.99402 * 18 17 16 31 31 H 1.08994 * 109.47520 * 179.97438 * 18 17 16 32 32 H 1.08998 * 109.46986 * 300.00088 * 18 17 16 33 33 H 1.08004 * 119.93530 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1855 0.0000 4 1 3.2219 1.1898 -0.1268 5 6 1.4638 2.3840 0.1633 6 7 0.1869 2.3736 0.4716 7 14 2.3584 4.0091 -0.0561 8 1 3.7799 3.7494 -0.3984 9 1 1.7187 4.7826 -1.1505 10 1 2.2881 4.7873 1.2067 11 6 2.1389 -1.1672 0.0005 12 8 3.3529 -1.1683 0.0693 13 6 1.4030 -2.4445 -0.0826 14 6 0.3891 -2.7313 0.8345 15 6 -0.2906 -3.9283 0.7545 16 6 0.0295 -4.8460 -0.2314 17 16 -0.8445 -6.3730 -0.3248 18 6 0.1092 -7.5054 0.7234 19 8 -2.1063 -6.0911 0.2648 20 8 -0.7424 -6.7523 -1.6904 21 6 1.0318 -4.5701 -1.1433 22 6 1.7207 -3.3747 -1.0763 23 17 2.9792 -3.0297 -2.2211 24 1 -0.3633 -1.0223 -0.1048 25 1 -0.3634 0.4204 0.9377 26 1 -0.3633 0.6019 -0.8330 27 1 -0.2915 3.2097 0.5852 28 1 0.1381 -2.0170 1.6047 29 1 -1.0743 -4.1510 1.4633 30 1 0.1425 -7.1171 1.7413 31 1 -0.3656 -8.4865 0.7244 32 1 1.1237 -7.5928 0.3346 33 1 1.2766 -5.2907 -1.9096 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149019952.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:14 Heat of formation + Delta-G solvation = -57.431664 kcal Electronic energy + Delta-G solvation = -21991.114544 eV Core-core repulsion = 18364.525138 eV Total energy + Delta-G solvation = -3626.589406 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -39.76887 -37.79142 -37.24415 -36.17471 -36.05488 -34.87345 -32.18280 -31.04014 -30.76787 -29.73354 -26.57541 -25.21657 -23.40157 -22.77191 -19.80446 -19.21172 -17.93415 -17.18243 -16.65884 -16.35101 -16.18983 -15.23828 -15.17860 -14.92113 -14.31580 -13.94561 -13.79834 -13.64604 -13.45042 -13.40977 -13.23436 -12.43566 -12.22611 -12.15207 -11.94055 -11.85339 -11.47894 -11.32304 -11.29505 -11.13505 -11.03587 -10.94697 -10.48454 -10.43395 -10.42564 -9.25758 -9.11176 -8.73057 -8.56559 -8.04415 -6.46902 -3.98606 -0.12664 0.62674 1.19327 2.35745 2.70076 2.99364 3.15076 3.20021 3.22576 3.72131 3.84769 3.95873 3.97048 4.50710 4.54150 4.64253 4.81104 4.91601 5.05858 5.32898 5.33414 5.36925 5.46806 5.74891 5.86578 6.06950 6.21924 6.27812 6.65336 6.87590 7.20965 7.37276 7.83896 8.26577 8.96859 9.18598 9.74439 10.46208 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.023252 B = 0.003906 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.885128 B = 7166.849441 C = 7920.813299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.420 5.420 3 C -0.294 4.294 4 H 0.110 0.890 5 C 0.029 3.971 6 N -0.873 5.873 7 Si 0.935 3.065 8 H -0.266 1.266 9 H -0.278 1.278 10 H -0.279 1.279 11 C 0.452 3.548 12 O -0.574 6.574 13 C -0.019 4.019 14 C -0.108 4.108 15 C -0.028 4.028 16 C -0.659 4.659 17 S 2.506 3.494 18 C -0.650 4.650 19 O -0.937 6.937 20 O -0.938 6.938 21 C -0.022 4.022 22 C -0.031 4.031 23 Cl -0.044 7.044 24 H 0.033 0.967 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.270 0.730 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.325 -15.416 1.092 15.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.136 5.136 3 C -0.422 4.422 4 H 0.128 0.872 5 C -0.175 4.175 6 N -0.513 5.513 7 Si 0.761 3.239 8 H -0.190 1.190 9 H -0.204 1.204 10 H -0.204 1.204 11 C 0.241 3.759 12 O -0.460 6.460 13 C -0.024 4.024 14 C -0.128 4.128 15 C -0.047 4.047 16 C -0.747 4.747 17 S 2.685 3.315 18 C -0.800 4.800 19 O -0.934 6.934 20 O -0.935 6.935 21 C -0.041 4.041 22 C -0.060 4.060 23 Cl -0.014 7.014 24 H 0.052 0.948 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.164 0.836 29 H 0.165 0.835 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.517 -15.310 0.589 15.719 hybrid contribution 0.999 1.241 0.240 1.612 sum -2.518 -14.068 0.829 14.316 Atomic orbital electron populations 1.22126 0.80129 0.97465 1.05001 1.43696 1.06286 1.04701 1.58883 1.19958 0.94295 0.81768 1.46194 0.87218 1.25430 0.95933 1.00169 0.95962 1.70088 1.08479 1.27933 1.44778 0.85706 0.79699 0.80376 0.78108 1.18957 1.20379 1.20437 1.17519 0.87504 0.82565 0.88355 1.90671 1.12534 1.85887 1.56889 1.20636 0.93463 0.95727 0.92576 1.21533 0.94736 0.97335 0.99178 1.20881 0.96583 0.92253 0.94947 1.30414 1.14699 1.22707 1.06835 1.04995 0.75390 0.75352 0.75718 1.30230 1.16315 1.16486 1.17006 1.93586 1.36871 1.83649 1.79296 1.93584 1.86691 1.82799 1.30450 1.20651 0.91750 0.95430 0.96316 1.20976 0.94871 0.95722 0.94439 1.98390 1.50165 1.95052 1.57830 0.94849 0.89490 0.91967 0.91877 0.83624 0.83491 0.84843 0.85137 0.84873 0.83259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.12 7.96 59.85 0.48 2.59 16 2 N -0.42 -10.52 3.02 -123.35 -0.37 -10.89 16 3 C -0.29 -7.90 9.53 -15.00 -0.14 -8.04 16 4 H 0.11 3.09 7.21 -52.49 -0.38 2.71 16 5 C 0.03 0.73 5.38 -17.46 -0.09 0.63 16 6 N -0.87 -21.81 9.66 55.50 0.54 -21.27 16 7 Si 0.94 19.91 29.56 -169.99 -5.02 14.88 16 8 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 9 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 10 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 11 C 0.45 10.93 6.54 -12.42 -0.08 10.85 16 12 O -0.57 -15.61 15.77 5.28 0.08 -15.52 16 13 C -0.02 -0.37 4.85 -104.94 -0.51 -0.88 16 14 C -0.11 -1.73 7.41 -39.17 -0.29 -2.02 16 15 C -0.03 -0.36 9.45 -39.64 -0.37 -0.73 16 16 C -0.66 -8.22 5.66 -39.49 -0.22 -8.44 16 17 S 2.51 24.22 5.79 -107.50 -0.62 23.59 16 18 C -0.65 -3.41 10.80 101.05 1.09 -2.32 16 19 O -0.94 -11.64 17.11 -57.54 -0.98 -12.63 16 20 O -0.94 -11.91 17.11 -57.54 -0.98 -12.89 16 21 C -0.02 -0.31 9.24 -39.60 -0.37 -0.68 16 22 C -0.03 -0.55 6.35 -39.05 -0.25 -0.80 16 23 Cl -0.04 -0.80 27.38 -51.86 -1.42 -2.22 16 24 H 0.03 0.64 4.61 -51.93 -0.24 0.40 16 25 H 0.09 1.98 6.74 -51.93 -0.35 1.63 16 26 H 0.06 1.45 7.44 -51.93 -0.39 1.06 16 27 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 28 H 0.15 2.23 7.37 -52.49 -0.39 1.85 16 29 H 0.15 1.47 7.56 -52.49 -0.40 1.08 16 30 H 0.13 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.13 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.15 1.78 7.55 -52.48 -0.40 1.38 16 LS Contribution 311.11 15.07 4.69 4.69 Total: -1.00 -34.09 311.11 -7.80 -41.89 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -2.94 Total: 0.22 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -0.76 Total: -9.84 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: 0.16 Total: -32.16 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -1.89 Total: -41.05 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 24.22 SS G_CDS: -0.62 Total: 23.59 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.42 Total: -2.22 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.09 -7.80 -41.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149019952.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.539 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds