Wall clock time and date at job start Tue Mar 31 2020 10:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36887 * 119.99655 * 2 1 4 4 H 1.08000 * 119.99398 * 187.79295 * 3 2 1 5 5 C 1.39034 * 120.00286 * 7.79282 * 3 2 1 6 6 N 1.31364 * 119.99972 * 7.89709 * 5 3 2 7 7 Si 1.86797 * 120.00047 * 187.90443 * 5 3 2 8 8 H 1.48496 * 109.47063 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.47574 * 119.99483 * 7 5 3 10 10 H 1.48504 * 109.47073 * 239.99933 * 7 5 3 11 11 C 1.34772 * 119.99907 * 179.97438 * 2 1 3 12 12 O 1.21600 * 120.00148 * 183.74346 * 11 2 1 13 13 C 1.47648 * 120.00216 * 3.75362 * 11 2 1 14 14 C 1.39696 * 120.15719 * 305.61541 * 13 11 2 15 15 C 1.37884 * 119.85927 * 180.25468 * 14 13 11 16 16 C 1.38433 * 120.18819 * 0.02562 * 15 14 13 17 17 S 1.76196 * 119.83801 * 179.97438 * 16 15 14 18 18 C 1.81398 * 104.45415 * 270.02206 * 17 16 15 19 19 O 1.42102 * 104.27419 * 26.09527 * 17 16 15 20 20 O 1.42097 * 104.28047 * 153.94790 * 17 16 15 21 21 C 1.38287 * 120.32883 * 359.97438 * 16 15 14 22 22 C 1.38132 * 120.14074 * 359.97438 * 21 16 15 23 23 Cl 1.73593 * 120.10049 * 179.97438 * 22 21 16 24 24 H 1.08997 * 109.47166 * 174.14481 * 1 2 3 25 25 H 1.08998 * 109.47280 * 294.14939 * 1 2 3 26 26 H 1.09005 * 109.46923 * 54.15037 * 1 2 3 27 27 H 0.96998 * 120.00226 * 180.02562 * 6 5 3 28 28 H 1.07999 * 120.07434 * 0.25184 * 14 13 11 29 29 H 1.07998 * 119.90754 * 179.97438 * 15 14 13 30 30 H 1.09001 * 109.46801 * 59.99402 * 18 17 16 31 31 H 1.08994 * 109.47520 * 179.97438 * 18 17 16 32 32 H 1.08998 * 109.46986 * 300.00088 * 18 17 16 33 33 H 1.08004 * 119.93530 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1855 0.0000 4 1 3.2219 1.1898 -0.1268 5 6 1.4638 2.3840 0.1633 6 7 0.1869 2.3736 0.4716 7 14 2.3584 4.0091 -0.0561 8 1 3.7799 3.7494 -0.3984 9 1 1.7187 4.7826 -1.1505 10 1 2.2881 4.7873 1.2067 11 6 2.1389 -1.1672 0.0005 12 8 3.3529 -1.1683 0.0693 13 6 1.4030 -2.4445 -0.0826 14 6 0.3891 -2.7313 0.8345 15 6 -0.2906 -3.9283 0.7545 16 6 0.0295 -4.8460 -0.2314 17 16 -0.8445 -6.3730 -0.3248 18 6 0.1092 -7.5054 0.7234 19 8 -2.1063 -6.0911 0.2648 20 8 -0.7424 -6.7523 -1.6904 21 6 1.0318 -4.5701 -1.1433 22 6 1.7207 -3.3747 -1.0763 23 17 2.9792 -3.0297 -2.2211 24 1 -0.3633 -1.0223 -0.1048 25 1 -0.3634 0.4204 0.9377 26 1 -0.3633 0.6019 -0.8330 27 1 -0.2915 3.2097 0.5852 28 1 0.1381 -2.0170 1.6047 29 1 -1.0743 -4.1510 1.4633 30 1 0.1425 -7.1171 1.7413 31 1 -0.3656 -8.4865 0.7244 32 1 1.1237 -7.5928 0.3346 33 1 1.2766 -5.2907 -1.9096 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149019952.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:13 Heat of formation + Delta-G solvation = -82.462311 kcal Electronic energy + Delta-G solvation = -21992.199954 eV Core-core repulsion = 18364.525138 eV Total energy + Delta-G solvation = -3627.674816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.27990 -39.39094 -38.11870 -37.54335 -36.94555 -36.79701 -33.94010 -32.51431 -32.00309 -30.20886 -28.41209 -26.93017 -24.89893 -24.01062 -21.41778 -20.13384 -19.20502 -18.83449 -18.27386 -17.34391 -17.09722 -16.95239 -16.32641 -16.15192 -16.03947 -15.52786 -15.22248 -14.96708 -14.62241 -14.15960 -13.87636 -13.85181 -13.70402 -13.53173 -13.10274 -13.03769 -12.96149 -12.83396 -12.68738 -12.58964 -12.37125 -12.34093 -12.14920 -11.94919 -11.69556 -11.14599 -10.64460 -10.28247 -9.99747 -9.96199 -8.36247 -6.00882 -0.89413 -0.58304 -0.03584 1.00911 1.30771 1.38949 1.52653 1.73919 1.89042 2.15540 2.26500 2.84434 3.03324 3.05326 3.19867 3.59721 3.70154 3.91009 4.06020 4.13378 4.19941 4.37983 4.48176 4.57858 4.70507 4.80995 5.00065 5.04464 5.05785 5.34556 5.40187 5.46562 5.90899 6.34448 7.03317 7.30043 7.85256 8.55692 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.023252 B = 0.003906 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.885128 B = 7166.849441 C = 7920.813299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.439 5.439 3 C -0.340 4.340 4 H 0.081 0.919 5 C 0.001 3.999 6 N -0.887 5.887 7 Si 0.996 3.004 8 H -0.275 1.275 9 H -0.267 1.267 10 H -0.267 1.267 11 C 0.453 3.547 12 O -0.615 6.615 13 C -0.056 4.056 14 C -0.110 4.110 15 C -0.015 4.015 16 C -0.644 4.644 17 S 2.518 3.482 18 C -0.623 4.623 19 O -0.963 6.963 20 O -0.970 6.970 21 C -0.019 4.019 22 C -0.046 4.046 23 Cl -0.061 7.061 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.043 0.957 27 H 0.277 0.723 28 H 0.149 0.851 29 H 0.186 0.814 30 H 0.157 0.843 31 H 0.160 0.840 32 H 0.152 0.848 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.779 -18.090 2.081 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.154 5.154 3 C -0.468 4.468 4 H 0.099 0.901 5 C -0.202 4.202 6 N -0.525 5.525 7 Si 0.818 3.182 8 H -0.200 1.200 9 H -0.192 1.192 10 H -0.192 1.192 11 C 0.243 3.757 12 O -0.503 6.503 13 C -0.060 4.060 14 C -0.130 4.130 15 C -0.033 4.033 16 C -0.727 4.727 17 S 2.698 3.302 18 C -0.777 4.777 19 O -0.961 6.961 20 O -0.967 6.967 21 C -0.038 4.038 22 C -0.074 4.074 23 Cl -0.032 7.032 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.167 0.833 29 H 0.203 0.797 30 H 0.175 0.825 31 H 0.178 0.822 32 H 0.170 0.830 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.014 -17.935 1.555 18.688 hybrid contribution 1.381 1.746 -0.010 2.226 sum -3.634 -16.189 1.545 16.664 Atomic orbital electron populations 1.21969 0.78733 0.98784 1.03613 1.43852 1.07210 1.04619 1.59754 1.19821 0.93582 0.83567 1.49798 0.90122 1.26122 0.96742 1.02397 0.94898 1.70150 1.09004 1.28926 1.44453 0.84840 0.78051 0.76667 0.78595 1.19968 1.19208 1.19245 1.18240 0.87351 0.83879 0.86266 1.90610 1.14638 1.87064 1.58030 1.20344 0.95865 0.94213 0.95571 1.21637 0.94004 0.98849 0.98470 1.21298 0.96197 0.90556 0.95286 1.31126 1.12608 1.24239 1.04762 1.04891 0.75019 0.74710 0.75613 1.30039 1.16054 1.15357 1.16236 1.93557 1.38891 1.84095 1.79520 1.93551 1.87109 1.82558 1.33500 1.20942 0.91410 0.94330 0.97100 1.21184 0.95248 0.96742 0.94260 1.98377 1.51157 1.95295 1.58386 0.91985 0.90382 0.93828 0.91284 0.83320 0.79726 0.82493 0.82186 0.82966 0.80902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 5.07 7.96 127.77 1.02 6.08 16 2 N -0.44 -23.01 3.02 -662.41 -2.00 -25.01 16 3 C -0.34 -19.27 9.53 84.10 0.80 -18.47 16 4 H 0.08 4.90 7.21 -2.91 -0.02 4.88 16 5 C 0.00 0.05 5.38 84.95 0.46 0.50 16 6 N -0.89 -45.06 9.66 21.68 0.21 -44.85 16 7 Si 1.00 41.73 29.56 68.60 2.03 43.76 16 8 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 9 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 10 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 11 C 0.45 22.92 6.54 86.73 0.57 23.49 16 12 O -0.62 -35.39 15.77 -4.03 -0.06 -35.45 16 13 C -0.06 -2.20 4.85 -20.07 -0.10 -2.30 16 14 C -0.11 -3.40 7.41 22.54 0.17 -3.23 16 15 C -0.02 -0.34 9.45 22.23 0.21 -0.13 16 16 C -0.64 -13.92 5.66 22.33 0.13 -13.79 16 17 S 2.52 38.37 5.79 -56.49 -0.33 38.04 16 18 C -0.62 -2.62 10.80 113.37 1.22 -1.40 16 19 O -0.96 -20.29 17.11 -127.65 -2.18 -22.47 16 20 O -0.97 -21.61 17.11 -127.65 -2.18 -23.80 16 21 C -0.02 -0.49 9.24 22.26 0.21 -0.29 16 22 C -0.05 -1.62 6.35 22.61 0.14 -1.48 16 23 Cl -0.06 -2.31 27.38 -2.72 -0.07 -2.39 16 24 H 0.06 2.39 4.61 -2.39 -0.01 2.38 16 25 H 0.08 3.64 6.74 -2.39 -0.02 3.62 16 26 H 0.04 2.09 7.44 -2.38 -0.02 2.08 16 27 H 0.28 13.05 8.31 -92.71 -0.77 12.28 16 28 H 0.15 4.44 7.37 -2.91 -0.02 4.42 16 29 H 0.19 2.83 7.56 -2.91 -0.02 2.81 16 30 H 0.16 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.16 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.15 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.17 3.68 7.55 -2.91 -0.02 3.66 16 Total: -1.00 -79.12 311.11 1.39 -77.73 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.16 Total: 5.44 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 4.82 Total: -11.01 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: -1.79 Total: -69.86 kcal Atomic # 8 Polarization: -77.29 SS G_CDS: -4.43 Total: -81.72 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 38.37 SS G_CDS: -0.33 Total: 38.04 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -0.07 Total: -2.39 kcal Total: -79.12 1.39 -77.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149019952.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.730 kcal (2) G-P(sol) polarization free energy of solvation -79.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds