Wall clock time and date at job start Tue Mar 31 2020 11:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45196 * 109.47124 * 2 1 4 4 C 1.34824 * 116.99854 * 179.97438 * 3 2 1 5 5 O 1.21565 * 119.99909 * 359.97438 * 4 3 2 6 6 C 1.46924 * 119.99647 * 179.97438 * 4 3 2 7 7 C 1.40271 * 120.93581 * 89.72093 * 6 4 3 8 8 Cl 1.73597 * 120.47776 * 0.02562 * 7 6 4 9 9 N 1.32097 * 119.04042 * 179.76165 * 7 6 4 10 10 C 1.32844 * 121.11059 * 0.52079 * 9 7 6 11 11 S 1.76204 * 118.95311 * 179.70405 * 10 9 7 12 12 C 1.80995 * 100.00066 * 0.02562 * 11 10 9 13 13 N 1.32529 * 122.08884 * 359.72914 * 10 9 7 14 14 C 1.32816 * 120.81889 * 359.97438 * 13 10 9 15 15 N 1.37947 * 120.59372 * 179.97438 * 14 13 10 16 16 C 1.36925 * 119.99804 * 0.02562 * 15 14 13 17 17 H 1.07999 * 120.00032 * 359.97438 * 16 15 14 18 18 C 1.38903 * 119.99994 * 179.97438 * 16 15 14 19 19 N 1.31487 * 120.00022 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99721 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47179 * 90.00097 * 20 18 16 22 22 H 1.48502 * 109.46758 * 209.99601 * 20 18 16 23 23 H 1.48501 * 109.47209 * 329.99748 * 20 18 16 24 24 H 1.08996 * 109.47065 * 300.00386 * 1 2 3 25 25 H 1.09005 * 109.46402 * 60.00386 * 1 2 3 26 26 H 1.09003 * 109.47008 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47065 * 239.99614 * 2 1 3 28 28 H 1.08996 * 109.46551 * 119.99888 * 2 1 3 29 29 H 1.08999 * 109.47523 * 180.02562 * 12 11 10 30 30 H 1.09006 * 109.47240 * 299.99728 * 12 11 10 31 31 H 1.08994 * 109.47590 * 59.99694 * 12 11 10 32 32 H 0.97001 * 119.99820 * 180.02562 * 15 14 13 33 33 H 0.96997 * 119.99763 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3507 1.5455 0.0005 5 8 4.0912 0.5814 0.0015 6 6 3.9122 2.9032 0.0000 7 6 4.1818 3.5726 1.2029 8 17 3.8574 2.8085 2.7275 9 7 4.6911 4.7906 1.1588 10 6 4.9395 5.3891 -0.0009 11 16 5.6119 7.0178 0.0065 12 6 5.7279 7.3018 1.7903 13 7 4.6973 4.8002 -1.1632 14 6 4.1909 3.5734 -1.2120 15 7 3.9400 2.9650 -2.4244 16 6 4.2139 3.6263 -3.5917 17 1 4.6258 4.6242 -3.5632 18 6 3.9618 3.0135 -4.8126 19 7 4.2253 3.6483 -5.9335 20 14 3.2486 1.2877 -4.8618 21 1 1.7657 1.3651 -4.8761 22 1 3.7198 0.5922 -6.0863 23 1 3.6935 0.5339 -3.6621 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 6.1373 8.2951 1.9743 30 1 4.7352 7.2304 2.2349 31 1 6.3804 6.5512 2.2361 32 1 3.5697 2.0689 -2.4499 33 1 4.0489 3.2205 -6.7860 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155533458.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:32 Heat of formation + Delta-G solvation = -42.644453 kcal Electronic energy + Delta-G solvation = -22053.364681 eV Core-core repulsion = 18459.709248 eV Total energy + Delta-G solvation = -3593.655433 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.53131 -39.41772 -36.77097 -36.32814 -36.08137 -33.02824 -32.21661 -31.59489 -30.62476 -28.64686 -25.56079 -25.33243 -23.09473 -22.27728 -21.14097 -19.42752 -18.20348 -17.72572 -17.01954 -16.51356 -16.16735 -15.70424 -15.01548 -14.75934 -14.68694 -13.83008 -13.61253 -13.56146 -13.43820 -13.22818 -12.82040 -12.64321 -12.55384 -12.36508 -11.82956 -11.75529 -11.65141 -11.33735 -11.17930 -11.09982 -10.94665 -10.48918 -10.40151 -10.37160 -9.84928 -9.61259 -9.44616 -8.64630 -8.19271 -7.42780 -6.96251 -4.25301 1.18103 1.59885 1.83813 1.92226 2.38269 2.57859 2.77404 2.78949 2.83719 2.97397 3.61265 3.94002 4.08892 4.74591 4.93253 4.95020 5.07416 5.21658 5.26875 5.31229 5.43126 5.44909 5.69762 5.73872 5.78515 5.95169 6.03797 6.31240 6.56170 6.83008 7.40571 7.55208 7.98946 8.06261 8.37091 8.67090 8.89440 10.10917 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.009665 B = 0.006962 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.304960 B = 4021.104442 C = 6537.200036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.350 6.350 4 C 0.537 3.463 5 O -0.498 6.498 6 C -0.328 4.328 7 C 0.319 3.681 8 Cl -0.035 7.035 9 N -0.608 5.608 10 C 0.364 3.636 11 S -0.001 6.001 12 C -0.142 4.142 13 N -0.528 5.528 14 C 0.396 3.604 15 N -0.498 5.498 16 C -0.288 4.288 17 H 0.144 0.856 18 C 0.053 3.947 19 N -0.828 5.828 20 Si 0.869 3.131 21 H -0.257 1.257 22 H -0.261 1.261 23 H -0.263 1.263 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.389 0.611 33 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.008 -1.487 11.031 11.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.267 6.267 4 C 0.379 3.621 5 O -0.385 6.385 6 C -0.348 4.348 7 C 0.145 3.855 8 Cl -0.007 7.007 9 N -0.339 5.339 10 C -0.016 4.016 11 S 0.231 5.769 12 C -0.312 4.312 13 N -0.256 5.256 14 C 0.143 3.857 15 N -0.100 5.100 16 C -0.419 4.419 17 H 0.162 0.838 18 C -0.159 4.159 19 N -0.459 5.459 20 Si 0.693 3.307 21 H -0.182 1.182 22 H -0.185 1.185 23 H -0.188 1.188 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.226 0.774 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.145 -0.207 9.589 10.094 hybrid contribution -1.220 -3.271 0.940 3.615 sum -4.365 -3.478 10.529 11.917 Atomic orbital electron populations 1.21801 0.92676 1.02710 1.03697 1.23046 0.95458 0.80900 1.02499 1.86765 1.24411 1.31605 1.83898 1.20704 0.80324 0.89389 0.71664 1.90823 1.60481 1.42553 1.44625 1.18863 1.25005 0.97269 0.93706 1.21090 0.90379 0.89196 0.84826 1.98378 1.93008 1.78793 1.30514 1.67930 1.27402 1.10357 1.28245 1.24259 0.93737 0.98677 0.84941 1.85690 1.76674 1.06480 1.08080 1.23481 1.06816 1.05046 0.95818 1.67902 1.21733 1.09597 1.26392 1.17282 0.96182 0.88742 0.83526 1.41209 1.50462 1.14689 1.03642 1.19982 1.38524 1.02916 0.80488 0.83847 1.25215 0.96612 0.99147 0.94896 1.69625 1.40542 1.37722 0.98030 0.86741 0.80931 0.83057 0.79997 1.18175 1.18474 1.18790 0.91376 0.91389 0.90402 0.91441 0.91158 0.88334 0.89299 0.89304 0.77398 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.29 37.16 0.38 -1.21 16 2 C 0.06 0.77 6.20 37.16 0.23 1.00 16 3 O -0.35 -6.30 10.23 -40.83 -0.42 -6.72 16 4 C 0.54 10.99 5.43 34.25 0.19 11.17 16 5 O -0.50 -10.82 16.90 -19.32 -0.33 -11.14 16 6 C -0.33 -7.09 5.80 -104.47 -0.61 -7.70 16 7 C 0.32 6.40 7.38 -16.67 -0.12 6.27 16 8 Cl -0.04 -0.59 28.33 -51.86 -1.47 -2.06 16 9 N -0.61 -11.98 9.07 -10.18 -0.09 -12.07 16 10 C 0.36 7.47 7.85 -90.61 -0.71 6.76 16 11 S 0.00 -0.02 22.89 -107.50 -2.46 -2.48 16 12 C -0.14 -1.72 9.61 101.05 0.97 -0.75 16 13 N -0.53 -12.30 9.17 -12.36 -0.11 -12.41 16 14 C 0.40 9.27 7.48 -154.87 -1.16 8.11 16 15 N -0.50 -11.84 5.15 -10.76 -0.06 -11.89 16 16 C -0.29 -7.36 10.20 -15.03 -0.15 -7.52 16 17 H 0.14 4.01 7.34 -52.49 -0.39 3.62 16 18 C 0.05 1.30 5.50 -17.45 -0.10 1.20 16 19 N -0.83 -21.26 13.96 55.49 0.77 -20.49 16 20 Si 0.87 17.94 27.74 -169.99 -4.71 13.23 16 21 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 23 H -0.26 -5.38 6.52 56.52 0.37 -5.01 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 30 H 0.09 1.09 8.11 -51.91 -0.42 0.67 16 31 H 0.09 1.11 8.10 -51.92 -0.42 0.68 16 32 H 0.39 8.82 4.70 -40.82 -0.19 8.62 16 33 H 0.29 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 325.30 15.07 4.90 4.90 Total: -1.00 -27.94 325.30 -8.17 -36.12 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -3.12 Total: 7.67 kcal Atomic # 6 Polarization: 18.43 SS G_CDS: -1.08 Total: 17.35 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.51 Total: -56.86 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.74 Total: -17.87 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -4.71 Total: 13.23 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.46 Total: -2.48 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.47 Total: -2.06 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.94 -8.17 -36.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533458.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.527 kcal (2) G-P(sol) polarization free energy of solvation -27.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds