Wall clock time and date at job start Tue Mar 31 2020 11:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45196 * 109.47124 * 2 1 4 4 C 1.34824 * 116.99854 * 179.97438 * 3 2 1 5 5 O 1.21565 * 119.99909 * 359.97438 * 4 3 2 6 6 C 1.46924 * 119.99647 * 179.97438 * 4 3 2 7 7 C 1.40271 * 120.93581 * 89.72093 * 6 4 3 8 8 Cl 1.73597 * 120.47776 * 0.02562 * 7 6 4 9 9 N 1.32097 * 119.04042 * 179.76165 * 7 6 4 10 10 C 1.32844 * 121.11059 * 0.52079 * 9 7 6 11 11 S 1.76204 * 118.95311 * 179.70405 * 10 9 7 12 12 C 1.80995 * 100.00066 * 0.02562 * 11 10 9 13 13 N 1.32529 * 122.08884 * 359.72914 * 10 9 7 14 14 C 1.32816 * 120.81889 * 359.97438 * 13 10 9 15 15 N 1.37947 * 120.59372 * 179.97438 * 14 13 10 16 16 C 1.36925 * 119.99804 * 0.02562 * 15 14 13 17 17 H 1.07999 * 120.00032 * 359.97438 * 16 15 14 18 18 C 1.38903 * 119.99994 * 179.97438 * 16 15 14 19 19 N 1.31487 * 120.00022 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99721 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47179 * 90.00097 * 20 18 16 22 22 H 1.48502 * 109.46758 * 209.99601 * 20 18 16 23 23 H 1.48501 * 109.47209 * 329.99748 * 20 18 16 24 24 H 1.08996 * 109.47065 * 300.00386 * 1 2 3 25 25 H 1.09005 * 109.46402 * 60.00386 * 1 2 3 26 26 H 1.09003 * 109.47008 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47065 * 239.99614 * 2 1 3 28 28 H 1.08996 * 109.46551 * 119.99888 * 2 1 3 29 29 H 1.08999 * 109.47523 * 180.02562 * 12 11 10 30 30 H 1.09006 * 109.47240 * 299.99728 * 12 11 10 31 31 H 1.08994 * 109.47590 * 59.99694 * 12 11 10 32 32 H 0.97001 * 119.99820 * 180.02562 * 15 14 13 33 33 H 0.96997 * 119.99763 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3507 1.5455 0.0005 5 8 4.0912 0.5814 0.0015 6 6 3.9122 2.9032 0.0000 7 6 4.1818 3.5726 1.2029 8 17 3.8574 2.8085 2.7275 9 7 4.6911 4.7906 1.1588 10 6 4.9395 5.3891 -0.0009 11 16 5.6119 7.0178 0.0065 12 6 5.7279 7.3018 1.7903 13 7 4.6973 4.8002 -1.1632 14 6 4.1909 3.5734 -1.2120 15 7 3.9400 2.9650 -2.4244 16 6 4.2139 3.6263 -3.5917 17 1 4.6258 4.6242 -3.5632 18 6 3.9618 3.0135 -4.8126 19 7 4.2253 3.6483 -5.9335 20 14 3.2486 1.2877 -4.8618 21 1 1.7657 1.3651 -4.8761 22 1 3.7198 0.5922 -6.0863 23 1 3.6935 0.5339 -3.6621 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 6.1373 8.2951 1.9743 30 1 4.7352 7.2304 2.2349 31 1 6.3804 6.5512 2.2361 32 1 3.5697 2.0689 -2.4499 33 1 4.0489 3.2205 -6.7860 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155533458.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:31 Heat of formation + Delta-G solvation = -58.415053 kcal Electronic energy + Delta-G solvation = -22054.048546 eV Core-core repulsion = 18459.709248 eV Total energy + Delta-G solvation = -3594.339298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.16880 -40.99910 -38.39684 -37.86060 -37.65959 -34.80503 -33.84370 -32.91704 -32.11054 -29.71915 -27.32689 -26.93088 -24.25320 -24.01908 -22.60893 -21.18410 -19.85987 -19.25955 -18.70242 -18.02376 -17.65043 -17.14573 -16.70881 -16.41119 -16.20919 -15.21626 -15.16660 -14.92975 -14.86175 -14.40349 -14.38438 -14.15715 -13.70465 -13.41989 -13.31054 -13.01608 -13.00070 -12.76283 -12.71689 -12.59840 -12.47863 -12.21401 -11.72897 -11.61431 -11.38123 -11.33650 -11.07875 -10.34957 -9.95522 -8.81953 -8.75826 -6.17381 -0.48476 0.10641 0.13172 0.42737 0.78950 1.13361 1.18602 1.20735 1.35012 1.56051 1.93213 2.21247 2.37330 2.91500 3.49515 3.64359 3.69342 3.93570 4.01485 4.04352 4.27442 4.45812 4.47413 4.59818 4.75197 4.87753 5.00992 5.05654 5.08449 5.28131 5.63291 5.77318 6.20470 6.46683 6.61714 6.80327 7.15643 8.36512 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.009665 B = 0.006962 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.304960 B = 4021.104442 C = 6537.200036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 O -0.353 6.353 4 C 0.542 3.458 5 O -0.516 6.516 6 C -0.341 4.341 7 C 0.312 3.688 8 Cl 0.002 6.998 9 N -0.590 5.590 10 C 0.352 3.648 11 S 0.005 5.995 12 C -0.133 4.133 13 N -0.566 5.566 14 C 0.405 3.595 15 N -0.514 5.514 16 C -0.312 4.312 17 H 0.105 0.895 18 C 0.013 3.987 19 N -0.878 5.878 20 Si 0.928 3.072 21 H -0.243 1.243 22 H -0.250 1.250 23 H -0.262 1.262 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.109 0.891 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.393 0.607 33 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.922 -2.207 13.697 14.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.031 4.031 3 O -0.270 6.270 4 C 0.384 3.616 5 O -0.404 6.404 6 C -0.361 4.361 7 C 0.137 3.863 8 Cl 0.031 6.969 9 N -0.320 5.320 10 C -0.025 4.025 11 S 0.237 5.763 12 C -0.302 4.302 13 N -0.296 5.296 14 C 0.152 3.848 15 N -0.120 5.120 16 C -0.443 4.443 17 H 0.123 0.877 18 C -0.193 4.193 19 N -0.512 5.512 20 Si 0.748 3.252 21 H -0.166 1.166 22 H -0.174 1.174 23 H -0.187 1.187 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.127 0.873 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.156 0.844 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.230 0.770 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.067 -0.887 12.309 12.994 hybrid contribution -0.887 -2.879 0.581 3.068 sum -4.954 -3.766 12.890 14.314 Atomic orbital electron populations 1.21856 0.89830 1.04795 1.03771 1.23524 0.97676 0.78829 1.03101 1.86743 1.22681 1.34351 1.83183 1.20439 0.81147 0.88548 0.71434 1.90807 1.61118 1.42783 1.45694 1.19123 1.25221 0.98104 0.93685 1.21438 0.89500 0.89245 0.86068 1.98388 1.92626 1.78149 1.27763 1.68132 1.26110 1.10073 1.27686 1.25194 0.92561 1.00326 0.84467 1.85774 1.74957 1.03206 1.12320 1.23653 1.07307 1.07219 0.91986 1.68036 1.23432 1.10136 1.27975 1.17760 0.93930 0.88875 0.84193 1.41002 1.52860 1.14983 1.03140 1.19553 1.40730 1.02122 0.81865 0.87735 1.25854 0.96644 1.02815 0.94021 1.69712 1.43094 1.39700 0.98661 0.85860 0.80918 0.78232 0.80148 1.16605 1.17373 1.18727 0.90778 0.91842 0.87258 0.91485 0.90027 0.84400 0.89037 0.89204 0.76992 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 10.29 71.98 0.74 -1.90 16 2 C 0.04 1.08 6.20 71.98 0.45 1.52 16 3 O -0.35 -12.22 10.23 -57.37 -0.59 -12.80 16 4 C 0.54 21.67 5.43 70.10 0.38 22.05 16 5 O -0.52 -21.90 16.90 19.62 0.33 -21.57 16 6 C -0.34 -14.62 5.80 -19.76 -0.11 -14.73 16 7 C 0.31 12.08 7.38 85.15 0.63 12.71 16 8 Cl 0.00 0.06 28.33 -2.72 -0.08 -0.01 16 9 N -0.59 -22.36 9.07 -186.13 -1.69 -24.05 16 10 C 0.35 14.31 7.85 180.35 1.42 15.72 16 11 S 0.01 0.16 22.89 -56.49 -1.29 -1.14 16 12 C -0.13 -2.77 9.61 113.37 1.09 -1.68 16 13 N -0.57 -27.01 9.17 -193.01 -1.77 -28.78 16 14 C 0.41 19.38 7.48 133.82 1.00 20.38 16 15 N -0.51 -25.25 5.15 -187.97 -0.97 -26.21 16 16 C -0.31 -16.88 10.20 84.06 0.86 -16.02 16 17 H 0.10 6.32 7.34 -2.91 -0.02 6.30 16 18 C 0.01 0.69 5.50 84.90 0.47 1.15 16 19 N -0.88 -47.36 13.96 21.66 0.30 -47.06 16 20 Si 0.93 37.56 27.74 68.60 1.90 39.46 16 21 H -0.24 -9.13 7.11 99.48 0.71 -8.42 16 22 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 23 H -0.26 -10.44 6.52 99.48 0.65 -9.79 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.14 1.87 8.14 -2.40 -0.02 1.85 16 30 H 0.09 1.94 8.11 -2.39 -0.02 1.92 16 31 H 0.09 1.93 8.10 -2.40 -0.02 1.92 16 32 H 0.39 18.11 4.70 -92.71 -0.44 17.67 16 33 H 0.29 14.29 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -63.25 325.30 3.74 -59.51 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.68 Total: 23.45 kcal Atomic # 6 Polarization: 32.29 SS G_CDS: 6.91 Total: 39.20 kcal Atomic # 7 Polarization: -121.98 SS G_CDS: -4.12 Total: -126.10 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -0.26 Total: -34.37 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 1.90 Total: 39.46 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -1.29 Total: -1.14 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -0.08 Total: -0.01 kcal Total: -63.25 3.74 -59.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533458.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.094 kcal (2) G-P(sol) polarization free energy of solvation -63.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds