Wall clock time and date at job start Tue Mar 31 2020 12:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.43192 * 120.00324 * 242.66171 * 3 2 1 5 5 N 3.51032 * 140.69182 * 242.66977 * 2 1 3 6 6 C 1.41153 * 120.00030 * 62.66972 * 3 2 1 7 7 C 1.38969 * 119.99977 * 6.04039 * 6 3 2 8 8 H 1.08003 * 119.99776 * 26.97394 * 7 6 3 9 9 C 1.40841 * 120.00479 * 206.97268 * 7 6 3 10 10 N 1.30328 * 119.99811 * 14.00475 * 9 7 6 11 11 Si 1.86797 * 120.00433 * 194.00791 * 9 7 6 12 12 H 1.48501 * 109.47296 * 89.99887 * 11 9 7 13 13 H 1.48499 * 109.47215 * 209.99932 * 11 9 7 14 14 H 1.48506 * 109.46935 * 329.99746 * 11 9 7 15 15 N 1.38367 * 119.99977 * 186.04970 * 6 3 2 16 16 C 1.39241 * 119.99844 * 280.25395 * 15 6 3 17 17 C 1.39028 * 119.61820 * 14.83256 * 16 15 6 18 18 C 1.39575 * 118.94435 * 179.97438 * 17 16 15 19 19 C 1.48092 * 120.89050 * 179.97438 * 18 17 16 20 20 N 1.34776 * 120.00218 * 355.73762 * 19 18 17 21 21 O 1.21521 * 119.99488 * 175.74249 * 19 18 17 22 22 C 1.40113 * 118.21645 * 0.02562 * 18 17 16 23 23 Cl 1.73589 * 120.43623 * 180.02562 * 22 18 17 24 24 C 1.38150 * 119.12719 * 0.27530 * 22 18 17 25 25 N 1.31869 * 120.97835 * 359.42745 * 24 22 18 26 26 H 0.97004 * 120.00325 * 185.00234 * 10 9 7 27 27 H 0.97004 * 120.00123 * 100.25706 * 15 6 3 28 28 H 1.08004 * 120.53056 * 359.96081 * 17 16 15 29 29 H 0.97000 * 119.99573 * 5.62547 * 20 19 18 30 30 H 0.96995 * 119.99849 * 185.63073 * 20 19 18 31 31 H 1.08006 * 119.51232 * 179.69957 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2838 0.5704 1.1015 5 7 3.8521 1.0210 1.9755 6 6 3.2740 -0.5603 -1.0860 7 6 2.5852 -0.9991 -2.2103 8 1 1.6360 -0.5540 -2.4699 9 6 3.1247 -2.0242 -3.0113 10 7 4.1144 -2.7461 -2.5665 11 14 2.4220 -2.3491 -4.7113 12 1 3.1467 -1.5256 -5.7122 13 1 2.5801 -3.7873 -5.0457 14 1 0.9804 -1.9927 -4.7274 15 7 4.6520 -0.6734 -1.0309 16 6 5.4525 0.4351 -1.2938 17 6 4.8861 1.7047 -1.3045 18 6 5.7016 2.8061 -1.5691 19 6 5.1434 4.1776 -1.5918 20 7 3.8178 4.3682 -1.4404 21 8 5.8807 5.1311 -1.7470 22 6 7.0624 2.5791 -1.8138 23 17 8.1292 3.9070 -2.1485 24 6 7.5430 1.2841 -1.7904 25 7 6.7435 0.2680 -1.5311 26 1 4.5337 -3.4029 -3.1442 27 1 5.0603 -1.5249 -0.8093 28 1 3.8317 1.8368 -1.1114 29 1 3.2401 3.6165 -1.2354 30 1 3.4416 5.2571 -1.5365 31 1 8.5900 1.1016 -1.9830 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158210750.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:01 Heat of formation + Delta-G solvation = 58.768496 kcal Electronic energy + Delta-G solvation = -23074.183945 eV Core-core repulsion = 19381.774907 eV Total energy + Delta-G solvation = -3692.409038 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.042 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.45984 -38.87045 -37.46728 -36.12557 -35.38091 -34.92647 -33.90097 -33.79680 -32.03742 -31.03284 -28.67772 -27.35058 -24.75565 -23.35195 -21.62604 -20.62434 -19.27387 -18.29741 -17.61425 -17.27142 -16.40305 -16.16321 -15.82862 -15.52981 -15.17312 -14.73501 -14.35607 -14.01664 -13.64693 -13.35486 -12.92681 -12.77475 -12.59003 -12.38119 -12.00405 -11.89072 -11.81880 -11.73596 -11.66586 -11.20616 -11.11859 -10.99797 -10.88807 -10.20419 -10.02764 -9.72390 -9.66854 -9.53707 -9.16834 -8.47302 -7.89570 -7.27553 -5.70297 0.89307 1.36906 1.83301 2.44708 2.57072 2.64827 2.68851 3.08698 3.24094 3.45710 3.56093 3.71162 3.87778 4.01480 4.04837 4.15203 4.70075 4.84855 4.88911 5.14114 5.20335 5.39711 5.75272 5.79030 5.95926 6.00953 6.12943 6.47949 6.84702 6.87044 7.00514 7.37577 7.43901 7.52333 7.81963 8.04731 8.31305 8.51232 8.77268 8.91956 8.97429 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.012053 B = 0.005434 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.472037 B = 5151.097850 C = 6081.471870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C 0.321 3.679 3 C -0.301 4.301 4 C 0.301 3.699 5 N -0.516 5.516 6 C 0.370 3.630 7 C -0.366 4.366 8 H 0.117 0.883 9 C 0.071 3.929 10 N -0.721 5.721 11 Si 0.928 3.072 12 H -0.255 1.255 13 H -0.265 1.265 14 H -0.248 1.248 15 N -0.652 5.652 16 C 0.424 3.576 17 C -0.181 4.181 18 C -0.050 4.050 19 C 0.564 3.436 20 N -0.846 5.846 21 O -0.519 6.519 22 C -0.114 4.114 23 Cl -0.044 7.044 24 C 0.158 3.842 25 N -0.513 5.513 26 H 0.310 0.690 27 H 0.422 0.578 28 H 0.151 0.849 29 H 0.406 0.594 30 H 0.405 0.595 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.217 1.781 -6.648 8.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.204 5.204 2 C 0.012 3.988 3 C -0.319 4.319 4 C -0.007 4.007 5 N -0.197 5.197 6 C 0.269 3.731 7 C -0.393 4.393 8 H 0.135 0.865 9 C -0.161 4.161 10 N -0.339 5.339 11 Si 0.749 3.251 12 H -0.180 1.180 13 H -0.189 1.189 14 H -0.171 1.171 15 N -0.281 5.281 16 C 0.188 3.812 17 C -0.207 4.207 18 C -0.062 4.062 19 C 0.349 3.651 20 N -0.411 5.411 21 O -0.394 6.394 22 C -0.148 4.148 23 Cl -0.015 7.015 24 C -0.002 4.002 25 N -0.231 5.231 26 H 0.122 0.878 27 H 0.264 0.736 28 H 0.169 0.831 29 H 0.236 0.764 30 H 0.236 0.764 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.327 1.992 -5.404 7.204 hybrid contribution -0.518 -0.034 -0.875 1.018 sum 3.809 1.958 -6.279 7.601 Atomic orbital electron populations 1.81094 1.12121 1.16496 1.10657 1.24675 0.91274 0.90899 0.91966 1.13138 0.83155 1.37722 0.97844 1.25163 0.92684 0.90980 0.91892 1.81107 1.09334 1.17015 1.12239 1.16699 0.79977 0.87694 0.88732 1.20513 1.05767 1.10665 1.02361 0.86506 1.26522 0.94077 0.93572 1.01924 1.69210 1.14638 1.12282 1.37798 0.85879 0.81483 0.79408 0.78367 1.17951 1.18948 1.17062 1.41629 1.03419 1.10447 1.72572 1.18138 0.87457 0.86510 0.89123 1.21836 1.01957 0.90678 1.06262 1.19817 0.92634 0.93708 1.00035 1.18057 0.82583 0.88184 0.76310 1.43729 1.08310 1.14465 1.74577 1.90864 1.58344 1.42152 1.48080 1.21648 0.91172 0.90899 1.11034 1.98358 1.63529 1.46070 1.93540 1.22324 0.99299 0.85190 0.93345 1.67152 1.03986 1.34092 1.17880 0.87793 0.73648 0.83113 0.76424 0.76388 0.81751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -11.16 18.54 41.84 0.78 -10.39 16 2 C 0.32 6.49 14.05 -22.47 -0.32 6.18 16 3 C -0.30 -5.80 4.99 -104.94 -0.52 -6.32 16 4 C 0.30 6.14 13.13 -22.49 -0.30 5.85 16 5 N -0.52 -11.23 18.54 41.83 0.78 -10.46 16 6 C 0.37 6.83 4.63 -83.54 -0.39 6.44 16 7 C -0.37 -6.61 8.39 -38.33 -0.32 -6.94 16 8 H 0.12 2.07 7.31 -52.48 -0.38 1.69 16 9 C 0.07 1.20 5.37 -17.21 -0.09 1.11 16 10 N -0.72 -12.37 11.54 55.60 0.64 -11.73 16 11 Si 0.93 13.26 29.59 -169.99 -5.03 8.23 16 12 H -0.26 -3.71 7.11 56.52 0.40 -3.31 16 13 H -0.27 -3.75 7.11 56.52 0.40 -3.35 16 14 H -0.25 -3.63 7.11 56.52 0.40 -3.23 16 15 N -0.65 -11.71 3.80 -9.75 -0.04 -11.75 16 16 C 0.42 7.51 7.32 -154.89 -1.13 6.38 16 17 C -0.18 -3.03 7.93 -38.79 -0.31 -3.34 16 18 C -0.05 -0.83 5.91 -104.65 -0.62 -1.45 16 19 C 0.56 8.98 8.05 -12.22 -0.10 8.88 16 20 N -0.85 -10.43 8.83 30.59 0.27 -10.16 16 21 O -0.52 -9.39 15.01 5.35 0.08 -9.31 16 22 C -0.11 -1.83 6.38 -38.91 -0.25 -2.08 16 23 Cl -0.04 -0.67 26.23 -51.86 -1.36 -2.03 16 24 C 0.16 2.39 10.97 -17.57 -0.19 2.20 16 25 N -0.51 -8.76 10.36 -12.41 -0.13 -8.89 16 26 H 0.31 4.76 8.29 -40.82 -0.34 4.42 16 27 H 0.42 7.68 7.87 -40.82 -0.32 7.36 16 28 H 0.15 2.43 4.35 -52.48 -0.23 2.20 16 29 H 0.41 4.67 6.98 -40.82 -0.29 4.39 16 30 H 0.41 4.08 8.93 -40.82 -0.36 3.72 16 31 H 0.17 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 312.67 15.07 4.71 4.71 Total: -1.00 -24.46 312.67 -4.97 -29.43 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -1.14 Total: 15.43 kcal Atomic # 6 Polarization: 21.44 SS G_CDS: -4.53 Total: 16.91 kcal Atomic # 7 Polarization: -65.66 SS G_CDS: 2.30 Total: -63.37 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 14 Polarization: 13.26 SS G_CDS: -5.03 Total: 8.23 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.36 Total: -2.03 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -24.46 -4.97 -29.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158210750.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.201 kcal (2) G-P(sol) polarization free energy of solvation -24.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds