Wall clock time and date at job start Tue Mar 31 2020 12:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.43192 * 120.00324 * 242.66171 * 3 2 1 5 5 N 3.51032 * 140.69182 * 242.66977 * 2 1 3 6 6 C 1.41153 * 120.00030 * 62.66972 * 3 2 1 7 7 C 1.38969 * 119.99977 * 6.04039 * 6 3 2 8 8 H 1.08003 * 119.99776 * 26.97394 * 7 6 3 9 9 C 1.40841 * 120.00479 * 206.97268 * 7 6 3 10 10 N 1.30328 * 119.99811 * 14.00475 * 9 7 6 11 11 Si 1.86797 * 120.00433 * 194.00791 * 9 7 6 12 12 H 1.48501 * 109.47296 * 89.99887 * 11 9 7 13 13 H 1.48499 * 109.47215 * 209.99932 * 11 9 7 14 14 H 1.48506 * 109.46935 * 329.99746 * 11 9 7 15 15 N 1.38367 * 119.99977 * 186.04970 * 6 3 2 16 16 C 1.39241 * 119.99844 * 280.25395 * 15 6 3 17 17 C 1.39028 * 119.61820 * 14.83256 * 16 15 6 18 18 C 1.39575 * 118.94435 * 179.97438 * 17 16 15 19 19 C 1.48092 * 120.89050 * 179.97438 * 18 17 16 20 20 N 1.34776 * 120.00218 * 355.73762 * 19 18 17 21 21 O 1.21521 * 119.99488 * 175.74249 * 19 18 17 22 22 C 1.40113 * 118.21645 * 0.02562 * 18 17 16 23 23 Cl 1.73589 * 120.43623 * 180.02562 * 22 18 17 24 24 C 1.38150 * 119.12719 * 0.27530 * 22 18 17 25 25 N 1.31869 * 120.97835 * 359.42745 * 24 22 18 26 26 H 0.97004 * 120.00325 * 185.00234 * 10 9 7 27 27 H 0.97004 * 120.00123 * 100.25706 * 15 6 3 28 28 H 1.08004 * 120.53056 * 359.96081 * 17 16 15 29 29 H 0.97000 * 119.99573 * 5.62547 * 20 19 18 30 30 H 0.96995 * 119.99849 * 185.63073 * 20 19 18 31 31 H 1.08006 * 119.51232 * 179.69957 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2838 0.5704 1.1015 5 7 3.8521 1.0210 1.9755 6 6 3.2740 -0.5603 -1.0860 7 6 2.5852 -0.9991 -2.2103 8 1 1.6360 -0.5540 -2.4699 9 6 3.1247 -2.0242 -3.0113 10 7 4.1144 -2.7461 -2.5665 11 14 2.4220 -2.3491 -4.7113 12 1 3.1467 -1.5256 -5.7122 13 1 2.5801 -3.7873 -5.0457 14 1 0.9804 -1.9927 -4.7274 15 7 4.6520 -0.6734 -1.0309 16 6 5.4525 0.4351 -1.2938 17 6 4.8861 1.7047 -1.3045 18 6 5.7016 2.8061 -1.5691 19 6 5.1434 4.1776 -1.5918 20 7 3.8178 4.3682 -1.4404 21 8 5.8807 5.1311 -1.7470 22 6 7.0624 2.5791 -1.8138 23 17 8.1292 3.9070 -2.1485 24 6 7.5430 1.2841 -1.7904 25 7 6.7435 0.2680 -1.5311 26 1 4.5337 -3.4029 -3.1442 27 1 5.0603 -1.5249 -0.8093 28 1 3.8317 1.8368 -1.1114 29 1 3.2401 3.6165 -1.2354 30 1 3.4416 5.2571 -1.5365 31 1 8.5900 1.1016 -1.9830 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158210750.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:01 Heat of formation + Delta-G solvation = 44.180438 kcal Electronic energy + Delta-G solvation = -23074.816531 eV Core-core repulsion = 19381.774907 eV Total energy + Delta-G solvation = -3693.041624 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.042 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.74092 -40.14992 -38.86233 -37.39361 -36.91645 -36.54813 -35.26726 -35.00063 -33.29311 -32.42663 -30.02786 -28.80850 -26.01982 -24.67480 -22.98298 -21.89547 -20.75730 -19.54039 -19.03836 -18.54581 -17.77877 -17.41147 -17.11479 -16.79264 -16.46526 -16.01312 -15.62845 -15.29849 -14.94518 -14.61299 -14.45059 -14.35292 -13.95622 -13.71051 -13.44526 -13.36669 -13.30828 -13.14096 -13.01389 -12.71963 -12.63924 -12.23686 -12.08412 -11.48966 -11.31598 -11.03740 -10.95467 -10.67288 -10.44569 -9.90374 -9.25048 -8.61021 -7.19964 -0.38747 0.09505 0.44079 1.20071 1.38699 1.52015 1.55589 1.82779 2.02652 2.08344 2.18098 2.25410 2.38978 2.52551 2.67566 2.77080 3.31656 3.49593 3.65330 3.79516 3.92364 3.95225 4.49088 4.50281 4.61608 4.67468 4.74044 5.21723 5.40762 5.59985 5.83028 6.00990 6.10871 6.25600 6.45555 6.66547 7.09795 7.18071 7.23656 7.33895 7.66289 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.012053 B = 0.005434 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.472037 B = 5151.097850 C = 6081.471870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C 0.329 3.671 3 C -0.309 4.309 4 C 0.313 3.687 5 N -0.546 5.546 6 C 0.367 3.633 7 C -0.362 4.362 8 H 0.119 0.881 9 C 0.045 3.955 10 N -0.727 5.727 11 Si 0.983 3.017 12 H -0.256 1.256 13 H -0.259 1.259 14 H -0.253 1.253 15 N -0.653 5.653 16 C 0.410 3.590 17 C -0.185 4.185 18 C -0.058 4.058 19 C 0.561 3.439 20 N -0.827 5.827 21 O -0.545 6.545 22 C -0.121 4.121 23 Cl -0.037 7.037 24 C 0.163 3.837 25 N -0.523 5.523 26 H 0.321 0.679 27 H 0.419 0.581 28 H 0.154 0.846 29 H 0.411 0.589 30 H 0.417 0.583 31 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.488 1.325 -8.027 9.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.229 5.229 2 C 0.021 3.979 3 C -0.327 4.327 4 C 0.006 3.994 5 N -0.229 5.229 6 C 0.265 3.735 7 C -0.388 4.388 8 H 0.137 0.863 9 C -0.186 4.186 10 N -0.345 5.345 11 Si 0.802 3.198 12 H -0.181 1.181 13 H -0.183 1.183 14 H -0.176 1.176 15 N -0.283 5.283 16 C 0.175 3.825 17 C -0.211 4.211 18 C -0.070 4.070 19 C 0.345 3.655 20 N -0.393 5.393 21 O -0.423 6.423 22 C -0.154 4.154 23 Cl -0.008 7.008 24 C 0.003 3.997 25 N -0.241 5.241 26 H 0.134 0.866 27 H 0.260 0.740 28 H 0.171 0.829 29 H 0.242 0.758 30 H 0.251 0.749 31 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 4.582 1.540 -6.767 8.316 hybrid contribution -0.532 0.051 -0.529 0.752 sum 4.050 1.591 -7.295 8.494 Atomic orbital electron populations 1.81091 1.12678 1.17707 1.11471 1.24771 0.91350 0.90357 0.91389 1.13069 0.82631 1.38878 0.98167 1.25270 0.92136 0.90407 0.91608 1.81103 1.10192 1.18426 1.13156 1.16683 0.80315 0.87868 0.88625 1.20783 1.05690 1.10301 1.02012 0.86311 1.27082 0.94265 0.93130 1.04129 1.69198 1.14389 1.12036 1.38894 0.85071 0.80393 0.79410 0.74943 1.18053 1.18294 1.17586 1.41537 1.03168 1.10446 1.73100 1.18286 0.87865 0.86630 0.89735 1.21821 1.02145 0.90502 1.06641 1.19997 0.93061 0.93985 0.99914 1.18077 0.83395 0.87683 0.76337 1.43592 1.07252 1.15461 1.72956 1.90849 1.59125 1.42609 1.49686 1.21836 0.91247 0.91507 1.10779 1.98360 1.63183 1.45852 1.93452 1.22820 1.00382 0.84475 0.91975 1.67190 1.03892 1.34860 1.18185 0.86626 0.74018 0.82879 0.75753 0.74933 0.78625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -23.17 18.54 19.00 0.35 -22.81 16 2 C 0.33 13.20 14.05 88.33 1.24 14.44 16 3 C -0.31 -11.80 4.99 -20.07 -0.10 -11.90 16 4 C 0.31 12.73 13.13 88.33 1.16 13.89 16 5 N -0.55 -23.81 18.54 19.00 0.35 -23.46 16 6 C 0.37 13.26 4.63 39.00 0.18 13.44 16 7 C -0.36 -12.61 8.39 23.08 0.19 -12.41 16 8 H 0.12 4.07 7.31 -2.91 -0.02 4.04 16 9 C 0.05 1.45 5.37 85.55 0.46 1.91 16 10 N -0.73 -23.69 11.54 21.98 0.25 -23.44 16 11 Si 0.98 25.25 29.59 68.60 2.03 27.28 16 12 H -0.26 -6.64 7.11 99.48 0.71 -5.93 16 13 H -0.26 -6.40 7.11 99.48 0.71 -5.69 16 14 H -0.25 -6.69 7.11 99.48 0.71 -5.98 16 15 N -0.65 -23.06 3.80 -184.76 -0.70 -23.76 16 16 C 0.41 14.21 7.32 132.98 0.97 15.18 16 17 C -0.18 -6.07 7.93 22.78 0.18 -5.89 16 18 C -0.06 -1.87 5.91 -19.88 -0.12 -1.98 16 19 C 0.56 17.36 8.05 86.86 0.70 18.06 16 20 N -0.83 -19.48 8.83 -175.44 -1.55 -21.03 16 21 O -0.54 -19.27 15.01 -3.78 -0.06 -19.33 16 22 C -0.12 -3.72 6.38 22.70 0.14 -3.57 16 23 Cl -0.04 -1.10 26.23 -2.72 -0.07 -1.17 16 24 C 0.16 4.66 10.97 84.67 0.93 5.59 16 25 N -0.52 -17.22 10.36 -193.17 -2.00 -19.22 16 26 H 0.32 9.18 8.29 -92.71 -0.77 8.41 16 27 H 0.42 15.03 7.87 -92.71 -0.73 14.30 16 28 H 0.15 4.86 4.35 -2.91 -0.01 4.85 16 29 H 0.41 9.06 6.98 -92.71 -0.65 8.41 16 30 H 0.42 7.85 8.93 -92.71 -0.83 7.02 16 31 H 0.20 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -50.24 312.67 3.64 -46.60 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: -0.91 Total: 33.59 kcal Atomic # 6 Polarization: 40.79 SS G_CDS: 5.94 Total: 46.74 kcal Atomic # 7 Polarization: -130.42 SS G_CDS: -3.30 Total: -133.72 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.06 Total: -19.33 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: 2.03 Total: 27.28 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.07 Total: -1.17 kcal Total: -50.24 3.64 -46.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158210750.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.785 kcal (2) G-P(sol) polarization free energy of solvation -50.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds