Wall clock time and date at job start Tue Mar 31 2020 11:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.43194 * 119.99764 * 217.23154 * 3 2 1 5 5 N 3.51036 * 140.69207 * 217.23205 * 2 1 3 6 6 C 1.41131 * 119.99835 * 37.22623 * 3 2 1 7 7 C 1.38940 * 120.00354 * 5.43121 * 6 3 2 8 8 H 1.08003 * 119.99862 * 23.79653 * 7 6 3 9 9 C 1.40858 * 120.00398 * 203.79748 * 7 6 3 10 10 N 1.30324 * 119.99715 * 7.09635 * 9 7 6 11 11 Si 1.86795 * 120.00129 * 187.10161 * 9 7 6 12 12 H 1.48500 * 109.47255 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.46881 * 119.99899 * 11 9 7 14 14 H 1.48500 * 109.47169 * 239.99541 * 11 9 7 15 15 N 1.38444 * 119.99660 * 185.42885 * 6 3 2 16 16 C 1.38751 * 120.00133 * 238.07109 * 15 6 3 17 17 N 1.33201 * 120.69011 * 355.63316 * 16 15 6 18 18 C 1.31870 * 120.71141 * 180.02562 * 17 16 15 19 19 Cl 1.73595 * 119.01031 * 179.97438 * 18 17 16 20 20 N 1.32093 * 121.97905 * 0.26400 * 18 17 16 21 21 C 1.32122 * 120.70439 * 359.47762 * 20 18 17 22 22 C 1.38397 * 119.23447 * 0.50608 * 21 20 18 23 23 C 1.50763 * 107.47938 * 179.77101 * 22 21 20 24 24 O 1.44018 * 105.92592 * 17.50526 * 23 22 21 25 25 C 1.43993 * 104.93612 * 331.85931 * 24 23 22 26 26 H 0.96998 * 119.99960 * 184.99473 * 10 9 7 27 27 H 0.97003 * 120.00556 * 58.06952 * 15 6 3 28 28 H 1.09000 * 110.16330 * 136.61666 * 23 22 21 29 29 H 1.08997 * 110.16104 * 258.32295 * 23 22 21 30 30 H 1.09007 * 110.14571 * 147.31052 * 25 24 23 31 31 H 1.09003 * 110.14644 * 268.96894 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2835 0.9883 0.7503 5 7 3.8521 1.7705 1.3455 6 6 3.2741 -0.9723 -0.7394 7 6 2.5845 -1.8596 -1.5564 8 1 1.6077 -1.5973 -1.9351 9 6 3.1594 -3.1014 -1.8908 10 7 4.2721 -3.4774 -1.3261 11 14 2.3269 -4.2088 -3.1437 12 1 1.0860 -3.5567 -3.6337 13 1 3.2472 -4.4439 -4.2853 14 1 1.9857 -5.5067 -2.5078 15 7 4.6539 -1.0424 -0.6507 16 6 5.4301 -0.9121 -1.7934 17 7 4.8613 -0.8059 -2.9932 18 6 5.5986 -0.6826 -4.0795 19 17 4.8111 -0.5481 -5.6207 20 7 6.9186 -0.6641 -4.0308 21 6 7.5524 -0.7595 -2.8755 22 6 6.8174 -0.8905 -1.7101 23 6 7.7951 -0.9820 -0.5660 24 8 9.0473 -0.4857 -1.0757 25 6 9.0109 -0.7665 -2.4875 26 1 4.7060 -4.2977 -1.6083 27 1 5.0782 -1.1825 0.2103 28 1 7.4575 -0.3651 0.2668 29 1 7.9029 -2.0183 -0.2460 30 1 9.5495 0.0051 -3.0378 31 1 9.4490 -1.7445 -2.6871 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158211401.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:09 Heat of formation + Delta-G solvation = 73.170493 kcal Electronic energy + Delta-G solvation = -23418.107290 eV Core-core repulsion = 19726.322770 eV Total energy + Delta-G solvation = -3691.784521 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.042 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.44154 -38.68976 -37.72756 -36.56067 -35.47146 -34.81542 -34.09385 -32.81588 -31.89615 -29.72937 -28.69473 -27.22544 -25.43116 -23.22569 -22.26082 -21.33735 -19.31932 -18.36362 -17.67981 -17.00910 -16.51995 -16.39218 -16.03368 -15.38000 -15.13520 -14.73575 -14.14665 -13.87351 -13.42090 -12.93987 -12.83081 -12.68157 -12.57658 -12.40998 -12.05006 -11.88646 -11.73879 -11.68676 -11.57803 -11.26734 -11.21824 -11.02610 -10.99358 -10.74877 -10.55513 -10.20832 -10.17556 -9.29014 -9.05329 -8.52342 -8.02459 -7.32006 -5.51142 0.94987 1.37337 1.57872 2.11045 2.66606 2.75515 2.79952 3.35364 3.39836 3.72204 3.77817 3.89211 3.89545 3.98080 4.17864 4.25078 4.37240 4.75357 5.09080 5.16643 5.21621 5.28491 5.42126 5.50066 5.54869 5.72015 6.08069 6.10979 6.25179 6.45184 6.87352 6.94056 7.10528 7.50197 7.62480 7.87083 8.05507 8.40137 8.85768 9.05719 9.08747 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.009937 B = 0.006977 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.958149 B = 4012.049712 C = 5235.428592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C 0.326 3.674 3 C -0.306 4.306 4 C 0.306 3.694 5 N -0.531 5.531 6 C 0.370 3.630 7 C -0.338 4.338 8 H 0.113 0.887 9 C 0.081 3.919 10 N -0.737 5.737 11 Si 0.921 3.079 12 H -0.244 1.244 13 H -0.260 1.260 14 H -0.263 1.263 15 N -0.615 5.615 16 C 0.519 3.481 17 N -0.524 5.524 18 C 0.408 3.592 19 Cl 0.019 6.981 20 N -0.541 5.541 21 C 0.174 3.826 22 C -0.311 4.311 23 C 0.114 3.886 24 O -0.355 6.355 25 C 0.107 3.893 26 H 0.301 0.699 27 H 0.414 0.586 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.685 -5.280 -6.232 12.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.211 5.211 2 C 0.017 3.983 3 C -0.324 4.324 4 C -0.001 4.001 5 N -0.213 5.213 6 C 0.267 3.733 7 C -0.366 4.366 8 H 0.131 0.869 9 C -0.149 4.149 10 N -0.356 5.356 11 Si 0.742 3.258 12 H -0.166 1.166 13 H -0.184 1.184 14 H -0.188 1.188 15 N -0.237 5.237 16 C 0.275 3.725 17 N -0.249 5.249 18 C 0.112 3.888 19 Cl 0.046 6.954 20 N -0.265 5.265 21 C 0.029 3.971 22 C -0.322 4.322 23 C 0.036 3.964 24 O -0.272 6.272 25 C 0.030 3.970 26 H 0.113 0.887 27 H 0.253 0.747 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.129 0.871 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.445 -4.086 -6.064 11.171 hybrid contribution 0.204 -1.160 -0.020 1.178 sum 8.649 -5.246 -6.083 11.804 Atomic orbital electron populations 1.81066 1.12154 1.12319 1.15557 1.24595 0.91211 0.91474 0.90973 1.12797 0.83182 1.09657 1.26811 1.25218 0.92571 0.91363 0.90969 1.81065 1.09819 1.13777 1.16665 1.16710 0.79452 0.88165 0.88963 1.20199 1.02925 0.95716 1.17736 0.86878 1.26484 0.94403 0.98799 0.95186 1.69422 1.13588 1.21829 1.30741 0.85945 0.81377 0.78997 0.79501 1.16633 1.18442 1.18772 1.41481 1.04919 1.71231 1.06060 1.17112 0.84821 0.84558 0.85985 1.67663 1.39263 1.21514 0.96483 1.22433 0.85028 0.92913 0.88390 1.98411 1.78712 1.95569 1.22662 1.66842 1.08670 1.22216 1.28776 1.22024 0.97355 0.90364 0.87385 1.21666 0.94416 1.16378 0.99785 1.21362 0.80764 1.00223 0.94002 1.89154 1.36196 1.82430 1.19431 1.21582 0.89426 1.03233 0.82786 0.88737 0.74680 0.88538 0.90134 0.87141 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.38 18.54 41.84 0.78 -11.61 16 2 C 0.33 7.31 14.00 -22.47 -0.31 6.99 16 3 C -0.31 -6.49 5.88 -104.95 -0.62 -7.10 16 4 C 0.31 6.66 14.82 -22.49 -0.33 6.32 16 5 N -0.53 -12.01 18.53 41.82 0.78 -11.23 16 6 C 0.37 7.40 5.59 -83.52 -0.47 6.94 16 7 C -0.34 -6.79 7.50 -38.33 -0.29 -7.08 16 8 H 0.11 2.35 7.19 -52.48 -0.38 1.97 16 9 C 0.08 1.51 4.71 -17.20 -0.08 1.43 16 10 N -0.74 -13.25 11.02 55.60 0.61 -12.64 16 11 Si 0.92 15.02 29.58 -169.99 -5.03 9.99 16 12 H -0.24 -4.08 7.11 56.52 0.40 -3.68 16 13 H -0.26 -4.26 7.11 56.52 0.40 -3.86 16 14 H -0.26 -4.21 7.11 56.52 0.40 -3.81 16 15 N -0.61 -11.06 3.35 -9.69 -0.03 -11.09 16 16 C 0.52 9.31 6.02 -154.63 -0.93 8.38 16 17 N -0.52 -9.95 8.46 -10.90 -0.09 -10.04 16 18 C 0.41 7.21 8.17 -91.83 -0.75 6.46 16 19 Cl 0.02 0.29 29.26 -51.86 -1.52 -1.23 16 20 N -0.54 -9.02 10.41 -7.88 -0.08 -9.10 16 21 C 0.17 2.63 7.56 -82.30 -0.62 2.01 16 22 C -0.31 -4.88 6.29 -104.25 -0.66 -5.54 16 23 C 0.11 1.47 7.44 36.04 0.27 1.73 16 24 O -0.35 -4.60 11.73 -35.23 -0.41 -5.01 16 25 C 0.11 1.23 7.63 36.11 0.28 1.51 16 26 H 0.30 4.98 8.29 -40.82 -0.34 4.65 16 27 H 0.41 6.77 8.67 -40.82 -0.35 6.42 16 28 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 314.51 15.07 4.74 4.74 Total: -1.00 -24.79 314.51 -6.33 -31.13 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -1.56 Total: 4.06 kcal Atomic # 6 Polarization: 26.57 SS G_CDS: -4.52 Total: 22.06 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: 1.96 Total: -65.72 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.41 Total: -5.01 kcal Atomic # 14 Polarization: 15.02 SS G_CDS: -5.03 Total: 9.99 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -1.52 Total: -1.23 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -24.79 -6.33 -31.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211401.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.296 kcal (2) G-P(sol) polarization free energy of solvation -24.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds