Wall clock time and date at job start Tue Mar 31 2020 11:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.43194 * 119.99764 * 217.23154 * 3 2 1 5 5 N 3.51036 * 140.69207 * 217.23205 * 2 1 3 6 6 C 1.41131 * 119.99835 * 37.22623 * 3 2 1 7 7 C 1.38940 * 120.00354 * 5.43121 * 6 3 2 8 8 H 1.08003 * 119.99862 * 23.79653 * 7 6 3 9 9 C 1.40858 * 120.00398 * 203.79748 * 7 6 3 10 10 N 1.30324 * 119.99715 * 7.09635 * 9 7 6 11 11 Si 1.86795 * 120.00129 * 187.10161 * 9 7 6 12 12 H 1.48500 * 109.47255 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.46881 * 119.99899 * 11 9 7 14 14 H 1.48500 * 109.47169 * 239.99541 * 11 9 7 15 15 N 1.38444 * 119.99660 * 185.42885 * 6 3 2 16 16 C 1.38751 * 120.00133 * 238.07109 * 15 6 3 17 17 N 1.33201 * 120.69011 * 355.63316 * 16 15 6 18 18 C 1.31870 * 120.71141 * 180.02562 * 17 16 15 19 19 Cl 1.73595 * 119.01031 * 179.97438 * 18 17 16 20 20 N 1.32093 * 121.97905 * 0.26400 * 18 17 16 21 21 C 1.32122 * 120.70439 * 359.47762 * 20 18 17 22 22 C 1.38397 * 119.23447 * 0.50608 * 21 20 18 23 23 C 1.50763 * 107.47938 * 179.77101 * 22 21 20 24 24 O 1.44018 * 105.92592 * 17.50526 * 23 22 21 25 25 C 1.43993 * 104.93612 * 331.85931 * 24 23 22 26 26 H 0.96998 * 119.99960 * 184.99473 * 10 9 7 27 27 H 0.97003 * 120.00556 * 58.06952 * 15 6 3 28 28 H 1.09000 * 110.16330 * 136.61666 * 23 22 21 29 29 H 1.08997 * 110.16104 * 258.32295 * 23 22 21 30 30 H 1.09007 * 110.14571 * 147.31052 * 25 24 23 31 31 H 1.09003 * 110.14644 * 268.96894 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2835 0.9883 0.7503 5 7 3.8521 1.7705 1.3455 6 6 3.2741 -0.9723 -0.7394 7 6 2.5845 -1.8596 -1.5564 8 1 1.6077 -1.5973 -1.9351 9 6 3.1594 -3.1014 -1.8908 10 7 4.2721 -3.4774 -1.3261 11 14 2.3269 -4.2088 -3.1437 12 1 1.0860 -3.5567 -3.6337 13 1 3.2472 -4.4439 -4.2853 14 1 1.9857 -5.5067 -2.5078 15 7 4.6539 -1.0424 -0.6507 16 6 5.4301 -0.9121 -1.7934 17 7 4.8613 -0.8059 -2.9932 18 6 5.5986 -0.6826 -4.0795 19 17 4.8111 -0.5481 -5.6207 20 7 6.9186 -0.6641 -4.0308 21 6 7.5524 -0.7595 -2.8755 22 6 6.8174 -0.8905 -1.7101 23 6 7.7951 -0.9820 -0.5660 24 8 9.0473 -0.4857 -1.0757 25 6 9.0109 -0.7665 -2.4875 26 1 4.7060 -4.2977 -1.6083 27 1 5.0782 -1.1825 0.2103 28 1 7.4575 -0.3651 0.2668 29 1 7.9029 -2.0183 -0.2460 30 1 9.5495 0.0051 -3.0378 31 1 9.4490 -1.7445 -2.6871 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158211401.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:09 Heat of formation + Delta-G solvation = 60.112445 kcal Electronic energy + Delta-G solvation = -23418.673530 eV Core-core repulsion = 19726.322770 eV Total energy + Delta-G solvation = -3692.350760 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.042 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.65716 -39.85593 -39.11862 -37.82899 -37.12866 -36.56764 -35.52990 -34.16027 -33.22248 -31.14134 -29.71469 -28.80931 -26.63803 -24.50765 -23.49651 -22.72613 -20.87244 -19.63882 -19.18377 -18.41115 -17.87627 -17.48272 -17.22418 -16.73669 -16.41177 -15.97202 -15.35825 -15.21425 -14.66370 -14.44552 -14.40143 -13.94838 -13.93308 -13.62714 -13.50853 -13.44766 -13.37894 -13.15739 -13.07440 -12.74607 -12.68426 -12.49375 -12.36444 -11.99654 -11.98113 -11.57966 -11.30545 -10.52580 -10.35867 -9.94657 -9.43588 -8.75994 -7.14032 -0.30234 0.04464 0.31891 0.67046 1.31843 1.45556 1.46544 1.96729 2.03740 2.08016 2.21446 2.48447 2.59990 2.61253 2.70054 2.89008 3.20972 3.38020 3.53421 3.77877 4.04103 4.15024 4.39072 4.48885 4.56919 4.60674 4.64417 4.69813 4.90484 5.34866 5.45438 5.55688 5.65031 5.99156 6.10763 6.48338 6.58562 7.05318 7.15392 7.32545 7.64065 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.009937 B = 0.006977 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.958149 B = 4012.049712 C = 5235.428592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C 0.330 3.670 3 C -0.320 4.320 4 C 0.314 3.686 5 N -0.551 5.551 6 C 0.368 3.632 7 C -0.339 4.339 8 H 0.101 0.899 9 C 0.061 3.939 10 N -0.729 5.729 11 Si 0.962 3.038 12 H -0.254 1.254 13 H -0.258 1.258 14 H -0.253 1.253 15 N -0.614 5.614 16 C 0.502 3.498 17 N -0.549 5.549 18 C 0.393 3.607 19 Cl 0.030 6.970 20 N -0.543 5.543 21 C 0.167 3.833 22 C -0.313 4.313 23 C 0.118 3.882 24 O -0.361 6.361 25 C 0.111 3.889 26 H 0.311 0.689 27 H 0.420 0.580 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.131 0.869 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.505 -6.584 -6.824 14.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.238 5.238 2 C 0.023 3.977 3 C -0.339 4.339 4 C 0.008 3.992 5 N -0.235 5.235 6 C 0.264 3.736 7 C -0.366 4.366 8 H 0.119 0.881 9 C -0.169 4.169 10 N -0.348 5.348 11 Si 0.781 3.219 12 H -0.177 1.177 13 H -0.182 1.182 14 H -0.177 1.177 15 N -0.238 5.238 16 C 0.260 3.740 17 N -0.275 5.275 18 C 0.097 3.903 19 Cl 0.058 6.942 20 N -0.267 5.267 21 C 0.022 3.978 22 C -0.324 4.324 23 C 0.041 3.959 24 O -0.279 6.279 25 C 0.034 3.966 26 H 0.124 0.876 27 H 0.260 0.740 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.149 0.851 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.305 -5.389 -6.647 13.394 hybrid contribution -0.264 -0.830 0.068 0.873 sum 10.041 -6.218 -6.578 13.519 Atomic orbital electron populations 1.81047 1.12758 1.13266 1.16773 1.24818 0.91485 0.90938 0.90457 1.12848 0.82645 1.10469 1.27964 1.25256 0.92216 0.91084 0.90615 1.81054 1.10406 1.14427 1.17584 1.16641 0.80482 0.87723 0.88753 1.20288 1.02490 0.96443 1.17379 0.88085 1.26848 0.94942 0.98909 0.96247 1.69381 1.13174 1.22105 1.30133 0.85348 0.80285 0.78111 0.78133 1.17697 1.18180 1.17715 1.41342 1.04046 1.71885 1.06549 1.17313 0.85723 0.85351 0.85654 1.67593 1.40325 1.22393 0.97213 1.22677 0.85558 0.93351 0.88686 1.98405 1.78630 1.95508 1.21698 1.66935 1.08195 1.22071 1.29480 1.22748 0.99193 0.89095 0.86719 1.21980 0.93818 1.15266 1.01361 1.21438 0.80022 1.01486 0.92956 1.89154 1.35818 1.82738 1.20186 1.21869 0.87118 1.05567 0.82061 0.87614 0.73996 0.88292 0.88101 0.85115 0.86103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -26.34 18.54 19.01 0.35 -25.99 16 2 C 0.33 15.00 14.00 88.33 1.24 16.24 16 3 C -0.32 -13.69 5.88 -20.08 -0.12 -13.81 16 4 C 0.31 13.74 14.82 88.34 1.31 15.05 16 5 N -0.55 -24.95 18.53 19.00 0.35 -24.60 16 6 C 0.37 14.68 5.59 38.98 0.22 14.90 16 7 C -0.34 -13.52 7.50 23.08 0.17 -13.35 16 8 H 0.10 4.24 7.19 -2.91 -0.02 4.22 16 9 C 0.06 2.19 4.71 85.56 0.40 2.59 16 10 N -0.73 -24.95 11.02 21.98 0.24 -24.71 16 11 Si 0.96 29.41 29.58 68.60 2.03 31.44 16 12 H -0.25 -8.16 7.11 99.48 0.71 -7.45 16 13 H -0.26 -7.77 7.11 99.48 0.71 -7.07 16 14 H -0.25 -7.34 7.11 99.48 0.71 -6.63 16 15 N -0.61 -21.72 3.35 -184.56 -0.62 -22.34 16 16 C 0.50 17.51 6.02 132.88 0.80 18.31 16 17 N -0.55 -20.49 8.46 -188.39 -1.59 -22.08 16 18 C 0.39 13.49 8.17 180.77 1.48 14.97 16 19 Cl 0.03 0.89 29.26 -2.72 -0.08 0.81 16 20 N -0.54 -17.18 10.41 -178.85 -1.86 -19.04 16 21 C 0.17 4.68 7.56 42.62 0.32 5.00 16 22 C -0.31 -9.25 6.29 -19.62 -0.12 -9.38 16 23 C 0.12 2.74 7.44 71.26 0.53 3.27 16 24 O -0.36 -8.25 11.73 -148.98 -1.75 -10.00 16 25 C 0.11 2.17 7.63 71.31 0.54 2.71 16 26 H 0.31 9.58 8.29 -92.71 -0.77 8.81 16 27 H 0.42 13.43 8.67 -92.71 -0.80 12.62 16 28 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.13 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -51.82 314.51 4.30 -47.52 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.45 Total: 12.47 kcal Atomic # 6 Polarization: 49.74 SS G_CDS: 6.77 Total: 56.51 kcal Atomic # 7 Polarization: -135.63 SS G_CDS: -3.13 Total: -138.76 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -1.75 Total: -10.00 kcal Atomic # 14 Polarization: 29.41 SS G_CDS: 2.03 Total: 31.44 kcal Atomic # 17 Polarization: 0.89 SS G_CDS: -0.08 Total: 0.81 kcal Total: -51.82 4.30 -47.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211401.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.631 kcal (2) G-P(sol) polarization free energy of solvation -51.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds