Wall clock time and date at job start Tue Mar 31 2020 12:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.43204 * 120.00231 * 0.14430 * 3 2 1 5 5 N 3.51038 * 140.68412 * 0.14571 * 2 1 3 6 6 C 1.41138 * 119.99646 * 180.14406 * 3 2 1 7 7 C 1.38944 * 119.99947 * 355.05880 * 6 3 2 8 8 H 1.08005 * 120.00260 * 334.34414 * 7 6 3 9 9 C 1.40868 * 119.99792 * 154.34060 * 7 6 3 10 10 N 1.30321 * 119.99823 * 164.87949 * 9 7 6 11 11 Si 1.86795 * 120.00030 * 344.88156 * 9 7 6 12 12 H 1.48496 * 109.47168 * 87.46731 * 11 9 7 13 13 H 1.48497 * 109.47169 * 207.46499 * 11 9 7 14 14 H 1.48498 * 109.47114 * 327.46208 * 11 9 7 15 15 N 1.38415 * 119.99977 * 175.06076 * 6 3 2 16 16 C 1.38658 * 120.00240 * 120.40715 * 15 6 3 17 17 C 1.39362 * 120.94194 * 353.91152 * 16 15 6 18 18 C 1.38016 * 119.20507 * 179.74356 * 17 16 15 19 19 Cl 1.73598 * 119.40801 * 180.25392 * 18 17 16 20 20 N 1.32276 * 121.18031 * 0.27355 * 18 17 16 21 21 C 1.31629 * 122.09512 * 359.97438 * 20 18 17 22 22 C 1.39526 * 120.63921 * 359.97438 * 21 20 18 23 23 C 1.47434 * 120.61886 * 179.97438 * 22 21 20 24 24 N 1.34779 * 119.99561 * 354.35034 * 23 22 21 25 25 O 1.21599 * 120.00537 * 174.34726 * 23 22 21 26 26 H 0.97002 * 120.00055 * 180.02562 * 10 9 7 27 27 H 0.97002 * 120.00627 * 300.41314 * 15 6 3 28 28 H 1.08001 * 120.39806 * 0.02562 * 17 16 15 29 29 H 1.07997 * 119.68052 * 179.97438 * 21 20 18 30 30 H 0.96996 * 120.00513 * 0.02562 * 24 23 22 31 31 H 0.97001 * 119.99736 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2846 -1.2392 -0.0031 5 7 3.8519 -2.2242 -0.0057 6 6 3.2731 1.2233 0.0031 7 6 2.5816 2.4242 -0.0976 8 1 1.6145 2.4520 -0.5775 9 6 3.1420 3.6056 0.4266 10 7 2.6548 4.7651 0.0851 11 14 4.5833 3.5102 1.6109 12 1 5.8539 3.4795 0.8429 13 1 4.5718 4.6985 2.5013 14 1 4.4700 2.2768 2.4301 15 7 4.6534 1.2259 0.1063 16 6 5.4227 1.7926 -0.8985 17 6 4.8371 2.2514 -2.0770 18 6 5.6362 2.8142 -3.0514 19 17 4.9114 3.3935 -4.5186 20 7 6.9445 2.9198 -2.8874 21 6 7.5489 2.4984 -1.7967 22 6 6.8196 1.9171 -0.7590 23 6 7.4971 1.4447 0.4623 24 7 8.8426 1.4674 0.5381 25 8 6.8421 1.0347 1.4012 26 1 3.0409 5.5787 0.4457 27 1 5.0826 0.8313 0.8815 28 1 3.7701 2.1717 -2.2241 29 1 8.6198 2.6036 -1.7041 30 1 9.3651 1.7949 -0.2106 31 1 9.2883 1.1570 1.3417 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158211495.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:55 Heat of formation + Delta-G solvation = 56.209396 kcal Electronic energy + Delta-G solvation = -23594.676394 eV Core-core repulsion = 19902.156384 eV Total energy + Delta-G solvation = -3692.520009 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.042 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.96364 -38.82805 -37.97222 -36.46597 -35.51988 -34.84402 -34.28775 -33.86373 -32.08315 -30.92899 -29.37880 -27.45999 -24.62349 -23.52570 -21.44202 -21.03464 -19.41574 -18.24816 -17.84061 -17.61596 -17.06586 -16.49035 -16.10732 -15.26607 -15.15114 -14.95952 -14.68187 -14.05375 -13.70278 -13.32081 -13.17380 -12.87342 -12.70877 -12.47158 -12.26588 -11.82724 -11.75538 -11.63794 -11.51554 -11.31794 -11.15989 -11.08095 -10.77992 -10.48312 -10.31779 -9.95917 -9.81911 -9.51021 -8.94359 -8.68292 -7.91971 -7.58181 -5.58549 0.60868 1.33782 1.88798 1.96979 2.65616 2.76532 2.81927 2.87704 3.35733 3.39552 3.45650 3.74828 3.81759 3.95041 4.08813 4.21501 4.34835 4.77686 4.91611 5.01165 5.03463 5.30101 5.46317 5.63997 5.90093 5.99945 6.28700 6.36252 6.59675 6.82477 7.04768 7.13827 7.32164 7.56531 7.72802 7.76717 7.99566 8.19798 8.81217 9.01627 9.02005 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.009735 B = 0.007297 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2875.585789 B = 3836.364798 C = 4475.822165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C 0.322 3.678 3 C -0.288 4.288 4 C 0.304 3.696 5 N -0.522 5.522 6 C 0.316 3.684 7 C -0.350 4.350 8 H 0.128 0.872 9 C 0.072 3.928 10 N -0.715 5.715 11 Si 0.915 3.085 12 H -0.249 1.249 13 H -0.284 1.284 14 H -0.242 1.242 15 N -0.651 5.651 16 C 0.322 3.678 17 C -0.205 4.205 18 C 0.225 3.775 19 Cl -0.027 7.027 20 N -0.525 5.525 21 C 0.191 3.809 22 C -0.278 4.278 23 C 0.583 3.417 24 N -0.849 5.849 25 O -0.544 6.544 26 H 0.307 0.693 27 H 0.427 0.573 28 H 0.168 0.832 29 H 0.163 0.837 30 H 0.401 0.599 31 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.852 5.704 -2.436 15.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.201 5.201 2 C 0.014 3.986 3 C -0.306 4.306 4 C -0.004 4.004 5 N -0.204 5.204 6 C 0.214 3.786 7 C -0.377 4.377 8 H 0.146 0.854 9 C -0.161 4.161 10 N -0.332 5.332 11 Si 0.739 3.261 12 H -0.174 1.174 13 H -0.211 1.211 14 H -0.166 1.166 15 N -0.283 5.283 16 C 0.205 3.795 17 C -0.231 4.231 18 C 0.066 3.934 19 Cl 0.001 6.999 20 N -0.240 5.240 21 C 0.029 3.971 22 C -0.290 4.290 23 C 0.370 3.630 24 N -0.413 5.413 25 O -0.423 6.423 26 H 0.119 0.881 27 H 0.277 0.723 28 H 0.186 0.814 29 H 0.180 0.820 30 H 0.230 0.770 31 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 12.557 4.652 -2.753 13.671 hybrid contribution 0.834 0.245 1.221 1.499 sum 13.391 4.897 -1.532 14.341 Atomic orbital electron populations 1.81080 1.12063 1.08441 1.18495 1.24545 0.91147 0.92308 0.90638 1.12676 0.83148 0.85398 1.49381 1.25189 0.92617 0.91963 0.90600 1.81102 1.09526 1.10786 1.18998 1.16998 0.79525 0.91908 0.90126 1.20147 1.04777 0.89377 1.23387 0.85428 1.26747 0.98570 0.94251 0.96504 1.69379 1.34209 0.99967 1.29600 0.86174 0.79670 0.79973 0.80274 1.17417 1.21129 1.16575 1.43078 1.05419 1.57571 1.22222 1.17692 0.88566 0.85955 0.87327 1.21653 1.03415 1.05745 0.92253 1.21370 0.89541 0.93891 0.88584 1.98403 1.80704 1.86828 1.33936 1.66944 1.09779 1.22702 1.24527 1.22391 0.99037 0.89556 0.86085 1.20233 0.93185 1.16158 0.99433 1.17812 0.82403 0.76614 0.86135 1.43598 1.06733 1.68913 1.22023 1.90582 1.64235 1.48392 1.39065 0.88109 0.72293 0.81408 0.82038 0.76966 0.76286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -12.24 18.54 41.84 0.78 -11.46 16 2 C 0.32 7.26 14.02 -22.47 -0.31 6.94 16 3 C -0.29 -6.16 5.88 -104.94 -0.62 -6.78 16 4 C 0.30 6.76 14.82 -22.45 -0.33 6.43 16 5 N -0.52 -12.11 18.54 41.86 0.78 -11.34 16 6 C 0.32 6.37 4.53 -83.53 -0.38 5.99 16 7 C -0.35 -7.18 7.19 -38.33 -0.28 -7.45 16 8 H 0.13 2.80 7.42 -52.48 -0.39 2.41 16 9 C 0.07 1.44 5.14 -17.20 -0.09 1.35 16 10 N -0.71 -14.32 13.90 55.60 0.77 -13.54 16 11 Si 0.91 16.90 23.10 -169.99 -3.93 12.97 16 12 H -0.25 -4.39 4.55 56.52 0.26 -4.14 16 13 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 14 H -0.24 -4.77 6.84 56.52 0.39 -4.39 16 15 N -0.65 -12.34 2.13 -7.83 -0.02 -12.36 16 16 C 0.32 5.57 4.35 -83.34 -0.36 5.21 16 17 C -0.21 -3.47 8.51 -39.24 -0.33 -3.81 16 18 C 0.23 3.53 7.26 -17.44 -0.13 3.40 16 19 Cl -0.03 -0.39 29.09 -51.86 -1.51 -1.90 16 20 N -0.53 -7.62 10.31 -10.10 -0.10 -7.72 16 21 C 0.19 2.35 10.70 -17.16 -0.18 2.17 16 22 C -0.28 -4.09 4.73 -104.65 -0.50 -4.59 16 23 C 0.58 8.14 7.39 -12.51 -0.09 8.05 16 24 N -0.85 -7.21 8.83 30.43 0.27 -6.94 16 25 O -0.54 -9.51 13.37 5.28 0.07 -9.44 16 26 H 0.31 5.53 8.29 -40.82 -0.34 5.19 16 27 H 0.43 8.41 4.82 -40.82 -0.20 8.21 16 28 H 0.17 2.96 6.28 -52.49 -0.33 2.63 16 29 H 0.16 1.20 6.46 -52.49 -0.34 0.86 16 30 H 0.40 2.07 6.92 -40.82 -0.28 1.79 16 31 H 0.41 2.82 8.93 -40.82 -0.36 2.46 16 LS Contribution 299.95 15.07 4.52 4.52 Total: -1.00 -26.90 299.95 -3.17 -30.07 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -1.19 Total: 10.24 kcal Atomic # 6 Polarization: 20.51 SS G_CDS: -3.60 Total: 16.91 kcal Atomic # 7 Polarization: -65.84 SS G_CDS: 2.47 Total: -63.36 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.07 Total: -9.44 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -3.93 Total: 12.97 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.51 Total: -1.90 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -26.90 -3.17 -30.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211495.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.282 kcal (2) G-P(sol) polarization free energy of solvation -26.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds