Wall clock time and date at job start Tue Mar 31 2020 12:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.43204 * 120.00231 * 0.14430 * 3 2 1 5 5 N 3.51038 * 140.68412 * 0.14571 * 2 1 3 6 6 C 1.41138 * 119.99646 * 180.14406 * 3 2 1 7 7 C 1.38944 * 119.99947 * 355.05880 * 6 3 2 8 8 H 1.08005 * 120.00260 * 334.34414 * 7 6 3 9 9 C 1.40868 * 119.99792 * 154.34060 * 7 6 3 10 10 N 1.30321 * 119.99823 * 164.87949 * 9 7 6 11 11 Si 1.86795 * 120.00030 * 344.88156 * 9 7 6 12 12 H 1.48496 * 109.47168 * 87.46731 * 11 9 7 13 13 H 1.48497 * 109.47169 * 207.46499 * 11 9 7 14 14 H 1.48498 * 109.47114 * 327.46208 * 11 9 7 15 15 N 1.38415 * 119.99977 * 175.06076 * 6 3 2 16 16 C 1.38658 * 120.00240 * 120.40715 * 15 6 3 17 17 C 1.39362 * 120.94194 * 353.91152 * 16 15 6 18 18 C 1.38016 * 119.20507 * 179.74356 * 17 16 15 19 19 Cl 1.73598 * 119.40801 * 180.25392 * 18 17 16 20 20 N 1.32276 * 121.18031 * 0.27355 * 18 17 16 21 21 C 1.31629 * 122.09512 * 359.97438 * 20 18 17 22 22 C 1.39526 * 120.63921 * 359.97438 * 21 20 18 23 23 C 1.47434 * 120.61886 * 179.97438 * 22 21 20 24 24 N 1.34779 * 119.99561 * 354.35034 * 23 22 21 25 25 O 1.21599 * 120.00537 * 174.34726 * 23 22 21 26 26 H 0.97002 * 120.00055 * 180.02562 * 10 9 7 27 27 H 0.97002 * 120.00627 * 300.41314 * 15 6 3 28 28 H 1.08001 * 120.39806 * 0.02562 * 17 16 15 29 29 H 1.07997 * 119.68052 * 179.97438 * 21 20 18 30 30 H 0.96996 * 120.00513 * 0.02562 * 24 23 22 31 31 H 0.97001 * 119.99736 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2846 -1.2392 -0.0031 5 7 3.8519 -2.2242 -0.0057 6 6 3.2731 1.2233 0.0031 7 6 2.5816 2.4242 -0.0976 8 1 1.6145 2.4520 -0.5775 9 6 3.1420 3.6056 0.4266 10 7 2.6548 4.7651 0.0851 11 14 4.5833 3.5102 1.6109 12 1 5.8539 3.4795 0.8429 13 1 4.5718 4.6985 2.5013 14 1 4.4700 2.2768 2.4301 15 7 4.6534 1.2259 0.1063 16 6 5.4227 1.7926 -0.8985 17 6 4.8371 2.2514 -2.0770 18 6 5.6362 2.8142 -3.0514 19 17 4.9114 3.3935 -4.5186 20 7 6.9445 2.9198 -2.8874 21 6 7.5489 2.4984 -1.7967 22 6 6.8196 1.9171 -0.7590 23 6 7.4971 1.4447 0.4623 24 7 8.8426 1.4674 0.5381 25 8 6.8421 1.0347 1.4012 26 1 3.0409 5.5787 0.4457 27 1 5.0826 0.8313 0.8815 28 1 3.7701 2.1717 -2.2241 29 1 8.6198 2.6036 -1.7041 30 1 9.3651 1.7949 -0.2106 31 1 9.2883 1.1570 1.3417 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158211495.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:55 Heat of formation + Delta-G solvation = 36.529856 kcal Electronic energy + Delta-G solvation = -23595.529762 eV Core-core repulsion = 19902.156384 eV Total energy + Delta-G solvation = -3693.373378 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.042 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.15627 -39.94407 -39.40037 -37.65420 -37.21237 -36.63597 -35.79363 -34.89321 -33.53104 -32.06531 -30.77893 -29.12273 -25.75240 -24.82862 -22.87859 -22.18638 -20.98568 -19.50273 -19.25028 -18.80179 -18.25651 -18.03621 -17.36687 -16.48690 -16.35150 -16.07268 -15.96444 -15.23319 -14.92922 -14.82809 -14.64306 -14.56603 -14.42529 -13.82113 -13.72038 -13.50699 -13.48691 -13.27979 -12.99233 -12.85882 -12.68960 -12.38049 -12.31005 -11.93753 -11.51642 -11.35555 -10.76983 -10.66581 -10.22424 -10.08614 -9.49028 -9.02780 -7.28447 -0.55508 0.02060 0.47348 0.73137 1.20089 1.29015 1.38280 1.69087 1.91457 1.92719 2.04114 2.14408 2.41212 2.45735 2.51258 2.70062 3.25586 3.35488 3.62570 3.73472 3.73781 3.90028 4.25216 4.35652 4.47609 4.65297 4.76771 5.12105 5.32120 5.46854 5.66737 5.80302 5.97249 6.27302 6.34471 6.52588 6.62891 7.05043 7.23090 7.26271 7.48988 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.009735 B = 0.007297 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2875.585789 B = 3836.364798 C = 4475.822165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C 0.328 3.672 3 C -0.301 4.301 4 C 0.313 3.687 5 N -0.543 5.543 6 C 0.329 3.671 7 C -0.348 4.348 8 H 0.109 0.891 9 C 0.061 3.939 10 N -0.726 5.726 11 Si 0.948 3.052 12 H -0.235 1.235 13 H -0.278 1.278 14 H -0.263 1.263 15 N -0.659 5.659 16 C 0.301 3.699 17 C -0.221 4.221 18 C 0.223 3.777 19 Cl -0.020 7.020 20 N -0.526 5.526 21 C 0.206 3.794 22 C -0.280 4.280 23 C 0.577 3.423 24 N -0.818 5.818 25 O -0.583 6.583 26 H 0.319 0.681 27 H 0.424 0.576 28 H 0.152 0.848 29 H 0.218 0.782 30 H 0.420 0.580 31 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.850 6.884 -2.670 18.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.227 5.227 2 C 0.021 3.979 3 C -0.319 4.319 4 C 0.006 3.994 5 N -0.225 5.225 6 C 0.226 3.774 7 C -0.374 4.374 8 H 0.127 0.873 9 C -0.172 4.172 10 N -0.344 5.344 11 Si 0.771 3.229 12 H -0.159 1.159 13 H -0.205 1.205 14 H -0.188 1.188 15 N -0.293 5.293 16 C 0.185 3.815 17 C -0.246 4.246 18 C 0.064 3.936 19 Cl 0.009 6.991 20 N -0.240 5.240 21 C 0.045 3.955 22 C -0.292 4.292 23 C 0.364 3.636 24 N -0.383 5.383 25 O -0.465 6.465 26 H 0.132 0.868 27 H 0.274 0.726 28 H 0.170 0.830 29 H 0.234 0.766 30 H 0.253 0.747 31 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 15.630 5.863 -3.031 16.967 hybrid contribution 0.007 -0.015 1.216 1.216 sum 15.637 5.848 -1.816 16.793 Atomic orbital electron populations 1.81062 1.12658 1.09121 1.19849 1.24729 0.91371 0.91702 0.90123 1.12726 0.82648 0.85720 1.50790 1.25239 0.92252 0.91816 0.90120 1.81085 1.10099 1.11198 1.20142 1.16833 0.80471 0.91077 0.89008 1.20077 1.03989 0.90182 1.23184 0.87341 1.27034 0.99416 0.93805 0.96923 1.69351 1.34595 1.00566 1.29862 0.85691 0.79036 0.79002 0.79134 1.15866 1.20536 1.18763 1.42987 1.04615 1.58780 1.22874 1.17979 0.89764 0.86646 0.87065 1.21549 1.02944 1.07140 0.93014 1.21468 0.90065 0.93503 0.88604 1.98404 1.80792 1.86616 1.33299 1.67104 1.08916 1.22735 1.25280 1.23244 1.01092 0.86926 0.84191 1.20537 0.92276 1.15788 1.00558 1.17819 0.83866 0.76634 0.85322 1.43352 1.04859 1.66940 1.23157 1.90572 1.65417 1.50298 1.40187 0.86803 0.72641 0.83001 0.76601 0.74684 0.74902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -26.20 18.54 19.00 0.35 -25.85 16 2 C 0.33 15.13 14.02 88.33 1.24 16.37 16 3 C -0.30 -13.11 5.88 -20.07 -0.12 -13.23 16 4 C 0.31 14.09 14.82 88.33 1.31 15.40 16 5 N -0.54 -25.33 18.54 19.01 0.35 -24.98 16 6 C 0.33 13.44 4.53 38.98 0.18 13.61 16 7 C -0.35 -14.47 7.19 23.08 0.17 -14.31 16 8 H 0.11 4.92 7.42 -2.91 -0.02 4.89 16 9 C 0.06 2.39 5.14 85.56 0.44 2.83 16 10 N -0.73 -28.59 13.90 21.98 0.31 -28.29 16 11 Si 0.95 33.78 23.10 68.60 1.58 35.36 16 12 H -0.23 -7.71 4.55 99.48 0.45 -7.26 16 13 H -0.28 -9.56 7.11 99.48 0.71 -8.85 16 14 H -0.26 -10.31 6.84 99.48 0.68 -9.63 16 15 N -0.66 -24.90 2.13 -178.70 -0.38 -25.28 16 16 C 0.30 10.08 4.35 38.99 0.17 10.25 16 17 C -0.22 -7.35 8.51 22.49 0.19 -7.16 16 18 C 0.22 6.64 7.26 84.57 0.61 7.25 16 19 Cl -0.02 -0.55 29.09 -2.72 -0.08 -0.63 16 20 N -0.53 -13.60 10.31 -185.87 -1.92 -15.52 16 21 C 0.21 4.22 10.70 85.03 0.91 5.13 16 22 C -0.28 -7.49 4.73 -19.88 -0.09 -7.58 16 23 C 0.58 14.47 7.39 86.67 0.64 15.11 16 24 N -0.82 -10.44 8.83 -175.88 -1.55 -11.99 16 25 O -0.58 -19.50 13.37 -4.03 -0.05 -19.56 16 26 H 0.32 11.08 8.29 -92.71 -0.77 10.31 16 27 H 0.42 16.67 4.82 -92.71 -0.45 16.23 16 28 H 0.15 5.48 6.28 -2.91 -0.02 5.46 16 29 H 0.22 1.84 6.46 -2.91 -0.02 1.82 16 30 H 0.42 2.05 6.92 -92.71 -0.64 1.41 16 31 H 0.42 4.15 8.93 -92.71 -0.83 3.32 16 Total: -1.00 -58.70 299.95 3.35 -55.34 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -0.90 Total: 17.71 kcal Atomic # 6 Polarization: 38.03 SS G_CDS: 5.64 Total: 43.67 kcal Atomic # 7 Polarization: -129.06 SS G_CDS: -2.84 Total: -131.90 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.05 Total: -19.56 kcal Atomic # 14 Polarization: 33.78 SS G_CDS: 1.58 Total: 35.36 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.63 kcal Total: -58.70 3.35 -55.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211495.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.872 kcal (2) G-P(sol) polarization free energy of solvation -58.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds