Wall clock time and date at job start Tue Mar 31 2020 11:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 117.00043 * 2 1 4 4 O 1.20827 * 119.99812 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00015 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.47358 * 59.99549 * 5 3 2 7 7 C 1.53006 * 109.46866 * 299.99954 * 5 3 2 8 8 S 1.81399 * 109.47007 * 179.97438 * 7 5 3 9 9 N 1.46496 * 109.47248 * 180.02562 * 5 3 2 10 10 C 1.38542 * 120.00283 * 205.00207 * 9 5 3 11 11 C 1.40043 * 120.44271 * 359.71417 * 10 9 5 12 12 C 1.38810 * 118.58938 * 179.77806 * 11 10 9 13 13 Cl 1.73595 * 120.33933 * 180.24169 * 12 11 10 14 14 N 1.32201 * 119.31998 * 0.50332 * 12 11 10 15 15 C 1.33412 * 120.86670 * 359.74436 * 14 12 11 16 16 C 1.41583 * 119.24108 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99966 * 179.97438 * 16 15 14 18 18 C 1.40047 * 119.99822 * 359.97253 * 16 15 14 19 19 N 1.30700 * 120.00142 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99936 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47295 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46900 * 120.00194 * 20 18 16 23 23 H 1.48501 * 109.47319 * 239.99884 * 20 18 16 24 24 N 1.32562 * 120.45142 * 180.02562 * 10 9 5 25 25 H 1.08999 * 109.47101 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46973 * 299.99675 * 1 2 3 27 27 H 1.09000 * 109.47177 * 59.99421 * 1 2 3 28 28 H 1.08993 * 109.46955 * 300.00219 * 7 5 3 29 29 H 1.09000 * 109.47050 * 60.00048 * 7 5 3 30 30 H 1.34496 * 103.00443 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99991 * 24.99332 * 9 5 3 32 32 H 1.07997 * 120.71020 * 0.02763 * 11 10 9 33 33 H 0.96993 * 120.00196 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1138 0.5810 1.2484 8 16 5.9254 0.6753 1.2473 9 7 3.9817 2.6797 0.0002 10 6 5.2207 3.0360 -0.5072 11 6 6.0858 2.0602 -1.0176 12 6 7.3160 2.4606 -1.5207 13 17 8.4209 1.2898 -2.1702 14 7 7.6396 3.7422 -1.4953 15 6 6.7986 4.6508 -0.9985 16 6 7.1802 6.0142 -0.9889 17 1 6.5087 6.7602 -0.5899 18 6 8.4285 6.3955 -1.4965 19 7 9.2409 5.4929 -1.9797 20 14 8.9324 8.1942 -1.4831 21 1 7.8433 9.0090 -0.8872 22 1 10.1689 8.3559 -0.6767 23 1 9.1860 8.6477 -2.8743 24 7 5.6058 4.3045 -0.5105 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.7244 1.0749 2.1385 29 1 3.8047 -0.4642 1.2483 30 1 6.2623 0.0371 2.3823 31 1 3.3893 3.3605 0.3558 32 1 5.8002 1.0187 -1.0235 33 1 10.1056 5.7569 -2.3310 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167619161.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:48 Heat of formation + Delta-G solvation = -24.886809 kcal Electronic energy + Delta-G solvation = -21854.404217 eV Core-core repulsion = 18261.518813 eV Total energy + Delta-G solvation = -3592.885404 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.83217 -39.09256 -37.06797 -35.99006 -35.48771 -33.62459 -31.99203 -30.62363 -28.82803 -27.98420 -26.42590 -24.83378 -22.23792 -21.95465 -20.58678 -18.45859 -17.57407 -17.50389 -17.15890 -16.50099 -16.14009 -15.60937 -15.23178 -14.64298 -14.57046 -14.04664 -13.77431 -13.47401 -13.24576 -13.07356 -12.90323 -12.73755 -12.36840 -12.05940 -11.38483 -11.37314 -11.18275 -11.06510 -10.79997 -10.71575 -10.32826 -10.17546 -10.10674 -9.92093 -9.12298 -8.97909 -8.22253 -7.62711 -7.46351 -7.18112 -6.54949 -4.75835 1.61087 1.99616 2.33749 2.56791 2.93886 3.03288 3.08700 3.11730 3.14525 3.16694 3.70273 3.91304 4.44332 4.59671 4.73913 4.81569 4.84832 4.93440 5.19567 5.26079 5.47986 5.89405 6.02040 6.08984 6.30077 6.43598 6.82024 6.88277 7.11283 7.43834 7.62739 8.09182 8.18024 8.51923 8.60404 9.05891 10.10819 10.25693 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.004233 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.504282 B = 6613.799245 C = 7642.441171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.466 3.534 4 O -0.489 6.489 5 C 0.192 3.808 6 H 0.130 0.870 7 C -0.105 4.105 8 S -0.143 6.143 9 N -0.714 5.714 10 C 0.467 3.533 11 C -0.383 4.383 12 C 0.276 3.724 13 Cl -0.080 7.080 14 N -0.524 5.524 15 C 0.436 3.564 16 C -0.391 4.391 17 H 0.097 0.903 18 C 0.065 3.935 19 N -0.700 5.700 20 Si 0.918 3.082 21 H -0.258 1.258 22 H -0.272 1.272 23 H -0.272 1.272 24 N -0.633 5.633 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.009 0.991 31 H 0.409 0.591 32 H 0.124 0.876 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.239 -10.562 3.238 15.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.270 6.270 3 C 0.305 3.695 4 O -0.375 6.375 5 C 0.082 3.918 6 H 0.147 0.853 7 C -0.256 4.256 8 S 0.012 5.988 9 N -0.353 5.353 10 C 0.220 3.780 11 C -0.420 4.420 12 C 0.094 3.906 13 Cl -0.052 7.052 14 N -0.245 5.245 15 C 0.201 3.799 16 C -0.426 4.426 17 H 0.115 0.885 18 C -0.163 4.163 19 N -0.321 5.321 20 Si 0.742 3.258 21 H -0.181 1.181 22 H -0.197 1.197 23 H -0.197 1.197 24 N -0.362 5.362 25 H 0.121 0.879 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.118 0.882 30 H -0.026 1.026 31 H 0.247 0.753 32 H 0.141 0.859 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.986 -9.405 2.925 13.333 hybrid contribution -1.023 -0.708 1.051 1.629 sum -10.009 -10.113 3.977 14.774 Atomic orbital electron populations 1.23316 0.75906 1.03844 1.02802 1.86494 1.23679 1.32782 1.84070 1.23581 0.91473 0.81763 0.72649 1.90702 1.66429 1.36244 1.44122 1.19766 0.86068 0.86002 0.99979 0.85290 1.23780 0.96635 1.04019 1.01192 1.89774 1.03640 1.75929 1.29461 1.43743 1.17423 1.04705 1.69476 1.17839 0.83751 0.89725 0.86679 1.20748 0.98678 0.98952 1.23581 1.21349 0.86862 0.90588 0.91772 1.98297 1.65270 1.56477 1.85150 1.68593 1.34298 0.98190 1.23442 1.19437 0.81598 0.93067 0.85848 1.19412 1.00168 0.90316 1.32747 0.88532 1.26119 0.96154 1.00063 0.93937 1.70156 1.06153 1.34351 1.21404 0.86090 0.79415 0.81480 0.78843 1.18134 1.19702 1.19688 1.68161 1.21230 1.15567 1.31286 0.87874 0.91771 0.91631 0.89523 0.88210 1.02573 0.75302 0.85864 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.62 10.47 -39.27 -0.41 -4.03 16 3 C 0.47 5.91 7.32 36.01 0.26 6.17 16 4 O -0.49 -7.47 15.59 -18.75 -0.29 -7.76 16 5 C 0.19 2.61 2.76 -69.08 -0.19 2.42 16 6 H 0.13 1.69 6.52 -51.93 -0.34 1.35 16 7 C -0.11 -1.28 5.93 37.16 0.22 -1.06 16 8 S -0.14 -2.28 20.37 -107.50 -2.19 -4.47 16 9 N -0.71 -12.54 5.03 -54.89 -0.28 -12.82 16 10 C 0.47 10.21 6.93 -154.99 -1.07 9.14 16 11 C -0.38 -8.16 6.40 -38.69 -0.25 -8.41 16 12 C 0.28 6.62 7.33 -17.18 -0.13 6.49 16 13 Cl -0.08 -1.66 29.15 -51.86 -1.51 -3.17 16 14 N -0.52 -14.26 7.86 -9.83 -0.08 -14.34 16 15 C 0.44 11.99 7.37 -158.35 -1.17 10.82 16 16 C -0.39 -10.43 9.37 -37.63 -0.35 -10.79 16 17 H 0.10 2.48 7.85 -52.49 -0.41 2.06 16 18 C 0.07 1.62 5.50 -17.35 -0.10 1.52 16 19 N -0.70 -18.15 11.42 55.55 0.63 -17.52 16 20 Si 0.92 18.23 29.56 -169.99 -5.02 13.21 16 21 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 24 N -0.63 -16.17 10.39 -11.89 -0.12 -16.30 16 25 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 27 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.10 0.94 8.11 -51.92 -0.42 0.52 16 30 H 0.01 0.13 9.07 97.61 0.89 1.02 16 31 H 0.41 7.29 7.92 -40.82 -0.32 6.96 16 32 H 0.12 2.30 4.90 -46.16 -0.23 2.07 16 33 H 0.28 6.46 8.29 -40.82 -0.34 6.13 16 LS Contribution 315.82 15.07 4.76 4.76 Total: -1.00 -30.52 315.82 -7.87 -38.40 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -1.66 Total: 6.39 kcal Atomic # 6 Polarization: 19.34 SS G_CDS: -1.70 Total: 17.64 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: 0.16 Total: -60.97 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.70 Total: -11.79 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.02 Total: 13.21 kcal Atomic # 16 Polarization: -2.28 SS G_CDS: -2.19 Total: -4.47 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -1.51 Total: -3.17 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.52 -7.87 -38.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167619161.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.508 kcal (2) G-P(sol) polarization free energy of solvation -30.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds