Wall clock time and date at job start Tue Mar 31 2020 11:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 117.00043 * 2 1 4 4 O 1.20827 * 119.99812 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00015 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.47358 * 59.99549 * 5 3 2 7 7 C 1.53006 * 109.46866 * 299.99954 * 5 3 2 8 8 S 1.81399 * 109.47007 * 179.97438 * 7 5 3 9 9 N 1.46496 * 109.47248 * 180.02562 * 5 3 2 10 10 C 1.38542 * 120.00283 * 205.00207 * 9 5 3 11 11 C 1.40043 * 120.44271 * 359.71417 * 10 9 5 12 12 C 1.38810 * 118.58938 * 179.77806 * 11 10 9 13 13 Cl 1.73595 * 120.33933 * 180.24169 * 12 11 10 14 14 N 1.32201 * 119.31998 * 0.50332 * 12 11 10 15 15 C 1.33412 * 120.86670 * 359.74436 * 14 12 11 16 16 C 1.41583 * 119.24108 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99966 * 179.97438 * 16 15 14 18 18 C 1.40047 * 119.99822 * 359.97253 * 16 15 14 19 19 N 1.30700 * 120.00142 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99936 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47295 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46900 * 120.00194 * 20 18 16 23 23 H 1.48501 * 109.47319 * 239.99884 * 20 18 16 24 24 N 1.32562 * 120.45142 * 180.02562 * 10 9 5 25 25 H 1.08999 * 109.47101 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46973 * 299.99675 * 1 2 3 27 27 H 1.09000 * 109.47177 * 59.99421 * 1 2 3 28 28 H 1.08993 * 109.46955 * 300.00219 * 7 5 3 29 29 H 1.09000 * 109.47050 * 60.00048 * 7 5 3 30 30 H 1.34496 * 103.00443 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99991 * 24.99332 * 9 5 3 32 32 H 1.07997 * 120.71020 * 0.02763 * 11 10 9 33 33 H 0.96993 * 120.00196 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1138 0.5810 1.2484 8 16 5.9254 0.6753 1.2473 9 7 3.9817 2.6797 0.0002 10 6 5.2207 3.0360 -0.5072 11 6 6.0858 2.0602 -1.0176 12 6 7.3160 2.4606 -1.5207 13 17 8.4209 1.2898 -2.1702 14 7 7.6396 3.7422 -1.4953 15 6 6.7986 4.6508 -0.9985 16 6 7.1802 6.0142 -0.9889 17 1 6.5087 6.7602 -0.5899 18 6 8.4285 6.3955 -1.4965 19 7 9.2409 5.4929 -1.9797 20 14 8.9324 8.1942 -1.4831 21 1 7.8433 9.0090 -0.8872 22 1 10.1689 8.3559 -0.6767 23 1 9.1860 8.6477 -2.8743 24 7 5.6058 4.3045 -0.5105 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.7244 1.0749 2.1385 29 1 3.8047 -0.4642 1.2483 30 1 6.2623 0.0371 2.3823 31 1 3.3893 3.3605 0.3558 32 1 5.8002 1.0187 -1.0235 33 1 10.1056 5.7569 -2.3310 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167619161.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:47 Heat of formation + Delta-G solvation = -44.749498 kcal Electronic energy + Delta-G solvation = -21855.265528 eV Core-core repulsion = 18261.518813 eV Total energy + Delta-G solvation = -3593.746715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.86541 -40.82074 -38.19972 -37.33270 -37.14601 -35.39419 -33.62507 -32.31400 -30.36856 -28.71971 -28.28954 -25.92923 -24.01948 -23.50860 -21.80312 -19.96363 -19.03936 -18.68575 -18.33857 -17.90883 -17.32941 -17.10048 -16.68114 -16.19555 -15.92920 -15.44139 -15.14119 -14.76293 -14.73820 -14.52955 -14.23293 -13.88067 -13.39559 -13.11896 -13.04009 -12.89695 -12.78789 -12.69515 -11.93620 -11.87175 -11.85985 -11.81138 -11.73530 -11.23114 -10.89611 -10.71277 -10.00936 -9.34353 -8.93667 -8.78194 -8.37050 -6.69658 0.42374 0.81624 0.99790 1.19322 1.23520 1.40135 1.46278 1.56562 1.62716 1.88616 2.24677 2.38909 2.81614 3.44753 3.66807 3.77870 3.99367 4.19315 4.29753 4.32599 4.36937 4.50214 4.60541 4.72307 4.75212 5.05202 5.15142 5.17941 5.33358 5.96008 6.22107 6.43064 6.53126 6.68856 6.76002 7.25978 8.27400 8.43431 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.004233 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.504282 B = 6613.799245 C = 7642.441171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.346 6.346 3 C 0.479 3.521 4 O -0.518 6.518 5 C 0.187 3.813 6 H 0.138 0.862 7 C -0.084 4.084 8 S -0.209 6.209 9 N -0.707 5.707 10 C 0.464 3.536 11 C -0.362 4.362 12 C 0.252 3.748 13 Cl -0.058 7.058 14 N -0.560 5.560 15 C 0.414 3.586 16 C -0.430 4.430 17 H 0.092 0.908 18 C 0.027 3.973 19 N -0.738 5.738 20 Si 0.997 3.003 21 H -0.256 1.256 22 H -0.264 1.264 23 H -0.263 1.263 24 N -0.660 5.660 25 H 0.139 0.861 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.138 0.862 30 H 0.036 0.964 31 H 0.408 0.592 32 H 0.151 0.849 33 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.516 -12.052 3.781 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.261 6.261 3 C 0.319 3.681 4 O -0.406 6.406 5 C 0.078 3.922 6 H 0.155 0.845 7 C -0.234 4.234 8 S -0.055 6.055 9 N -0.345 5.345 10 C 0.217 3.783 11 C -0.397 4.397 12 C 0.073 3.927 13 Cl -0.030 7.030 14 N -0.282 5.282 15 C 0.176 3.824 16 C -0.465 4.465 17 H 0.110 0.890 18 C -0.197 4.197 19 N -0.360 5.360 20 Si 0.816 3.184 21 H -0.179 1.179 22 H -0.189 1.189 23 H -0.188 1.188 24 N -0.390 5.390 25 H 0.157 0.843 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.156 0.844 30 H 0.001 0.999 31 H 0.245 0.755 32 H 0.168 0.832 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.306 -10.990 3.465 15.460 hybrid contribution -0.821 -0.551 0.973 1.387 sum -11.127 -11.541 4.438 16.634 Atomic orbital electron populations 1.23674 0.73887 1.06214 1.02818 1.86480 1.25451 1.30886 1.83287 1.23189 0.90765 0.82112 0.72003 1.90709 1.66845 1.37402 1.45682 1.19987 0.87268 0.83705 1.01235 0.84456 1.23740 0.92883 1.06227 1.00556 1.89825 1.07963 1.76624 1.31089 1.43799 1.15785 1.06673 1.68270 1.18084 0.85109 0.88927 0.86172 1.20937 0.97339 1.00100 1.21327 1.21787 0.88238 0.90471 0.92214 1.98286 1.64744 1.55124 1.84837 1.68563 1.35136 0.99428 1.25114 1.19772 0.82407 0.93806 0.86381 1.19685 1.01575 0.90441 1.34841 0.88986 1.26995 0.95296 1.04685 0.92760 1.70231 1.06750 1.36685 1.22316 0.84942 0.78952 0.75341 0.79143 1.17924 1.18871 1.18778 1.68176 1.21051 1.17531 1.32292 0.84330 0.91540 0.91948 0.88620 0.84366 0.99926 0.75487 0.83180 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.35 -5.86 10.47 -51.45 -0.54 -6.40 16 3 C 0.48 10.95 7.32 71.24 0.52 11.47 16 4 O -0.52 -15.01 15.59 21.96 0.34 -14.66 16 5 C 0.19 4.63 2.76 44.25 0.12 4.75 16 6 H 0.14 3.22 6.52 -2.39 -0.02 3.21 16 7 C -0.08 -1.76 5.93 71.98 0.43 -1.34 16 8 S -0.21 -6.27 20.37 -56.49 -1.15 -7.42 16 9 N -0.71 -24.24 5.03 -327.59 -1.65 -25.89 16 10 C 0.46 20.37 6.93 133.39 0.92 21.30 16 11 C -0.36 -15.29 6.40 22.84 0.15 -15.14 16 12 C 0.25 12.21 7.33 84.77 0.62 12.84 16 13 Cl -0.06 -2.39 29.15 -2.72 -0.08 -2.47 16 14 N -0.56 -31.40 7.86 -185.03 -1.45 -32.86 16 15 C 0.41 23.62 7.37 135.17 1.00 24.61 16 16 C -0.43 -23.87 9.37 23.53 0.22 -23.65 16 17 H 0.09 4.95 7.85 -2.91 -0.02 4.92 16 18 C 0.03 1.37 5.50 85.30 0.47 1.84 16 19 N -0.74 -39.40 11.42 21.84 0.25 -39.15 16 20 Si 1.00 38.06 29.56 68.60 2.03 40.09 16 21 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 22 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 23 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 24 N -0.66 -34.68 10.39 -191.54 -1.99 -36.67 16 25 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.07 0.77 8.13 -2.39 -0.02 0.75 16 27 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 28 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.14 1.95 8.11 -2.39 -0.02 1.93 16 30 H 0.04 0.98 9.07 73.35 0.67 1.64 16 31 H 0.41 14.37 7.92 -92.71 -0.73 13.64 16 32 H 0.15 5.36 4.90 -6.94 -0.03 5.33 16 33 H 0.28 13.56 8.29 -92.71 -0.77 12.80 16 Total: -1.00 -68.93 315.82 2.52 -66.41 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 1.11 Total: 20.84 kcal Atomic # 6 Polarization: 32.53 SS G_CDS: 5.64 Total: 38.18 kcal Atomic # 7 Polarization: -129.72 SS G_CDS: -4.84 Total: -134.57 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.20 Total: -21.06 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Atomic # 16 Polarization: -6.27 SS G_CDS: -1.15 Total: -7.42 kcal Atomic # 17 Polarization: -2.39 SS G_CDS: -0.08 Total: -2.47 kcal Total: -68.93 2.52 -66.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167619161.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.663 kcal (2) G-P(sol) polarization free energy of solvation -68.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds