Wall clock time and date at job start Tue Mar 31 2020 12:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99750 * 2 1 4 4 H 1.48498 * 109.47088 * 269.99844 * 3 2 1 5 5 H 1.48496 * 109.47311 * 30.00282 * 3 2 1 6 6 H 1.48505 * 109.46876 * 149.99844 * 3 2 1 7 7 C 1.37872 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99986 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00271 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47084 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47266 * 180.02562 * 10 9 7 12 12 N 1.46492 * 109.47228 * 179.97438 * 11 10 9 13 13 C 1.38316 * 119.99843 * 180.02562 * 12 11 10 14 14 N 1.32405 * 119.80445 * 5.47709 * 13 12 11 15 15 C 1.31961 * 121.77021 * 179.97438 * 14 13 12 16 16 Cl 1.73606 * 119.41516 * 180.02562 * 15 14 13 17 17 C 1.38677 * 121.17197 * 0.02562 * 15 14 13 18 18 Cl 1.73601 * 120.26734 * 180.02562 * 17 15 14 19 19 C 1.38319 * 119.47186 * 359.97438 * 17 15 14 20 20 C 1.40047 * 118.37194 * 0.02562 * 19 17 15 21 21 C 1.47364 * 120.58815 * 179.97438 * 20 19 17 22 22 N 1.34778 * 120.00208 * 354.24673 * 21 20 19 23 23 O 1.21618 * 120.00358 * 174.25679 * 21 20 19 24 24 H 0.97000 * 119.99720 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46698 * 60.00127 * 9 7 2 26 26 H 1.08998 * 109.47177 * 300.00509 * 9 7 2 27 27 H 1.09000 * 109.47613 * 60.00242 * 10 9 7 28 28 H 1.08998 * 109.47166 * 300.00071 * 10 9 7 29 29 H 1.09000 * 109.46652 * 59.99598 * 11 10 9 30 30 H 1.08998 * 109.47041 * 300.00092 * 11 10 9 31 31 H 0.96997 * 120.00586 * 0.02562 * 12 11 10 32 32 H 1.08007 * 120.81242 * 180.27592 * 19 17 15 33 33 H 0.96996 * 119.99558 * 0.02562 * 22 21 20 34 34 H 0.97003 * 120.00237 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0001 11 6 5.5516 -2.6365 0.0001 12 7 6.0399 -4.0176 0.0009 13 6 7.3998 -4.2704 0.0016 14 7 8.2557 -3.2661 0.1113 15 6 9.5606 -3.4629 0.1167 16 17 10.6275 -2.1013 0.2644 17 6 10.0948 -4.7379 0.0066 18 17 11.8152 -4.9697 0.0171 19 6 9.2458 -5.8236 -0.1105 20 6 7.8648 -5.5912 -0.1141 21 6 6.9160 -6.7121 -0.2370 22 7 7.3727 -7.9597 -0.4634 23 8 5.7210 -6.5113 -0.1342 24 1 -0.4850 0.8401 -0.0004 25 1 3.8752 -0.6795 0.8895 26 1 3.8746 -0.6807 -0.8905 27 1 3.6580 -3.1505 -0.8896 28 1 3.6586 -3.1501 0.8903 29 1 5.9149 -2.1225 0.8901 30 1 5.9150 -2.1227 -0.8899 31 1 5.4097 -4.7549 0.0009 32 1 9.6383 -6.8264 -0.1931 33 1 8.3258 -8.1199 -0.5452 34 1 6.7482 -8.6976 -0.5439 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427316.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:22 Heat of formation + Delta-G solvation = -19.189509 kcal Electronic energy + Delta-G solvation = -21021.226531 eV Core-core repulsion = 17426.544474 eV Total energy + Delta-G solvation = -3594.682057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.19728 -39.21575 -37.32872 -36.90844 -36.28827 -34.44318 -33.58751 -32.59914 -31.83540 -29.79017 -26.88134 -25.24775 -23.65204 -22.32254 -21.45159 -20.27090 -18.66827 -18.03205 -17.80891 -16.77402 -16.46151 -16.00526 -15.80642 -14.99147 -14.86530 -14.73995 -14.52396 -14.06882 -13.96958 -13.44267 -12.89105 -12.66210 -12.29056 -11.94274 -11.84494 -11.82774 -11.28749 -11.09294 -10.91830 -10.70387 -10.35289 -10.17122 -10.12440 -10.01025 -9.89405 -9.73324 -9.68684 -9.20750 -8.53686 -7.94069 -6.04018 -4.02684 0.13638 0.77850 1.31863 1.69890 2.38774 2.99784 3.17227 3.32439 3.33511 3.39868 3.43946 4.01504 4.26147 4.44697 4.45997 4.49017 4.99817 5.12257 5.29762 5.47905 5.57841 5.63617 6.00615 6.29750 6.43331 6.45330 6.78248 6.80364 6.88909 7.09289 7.25042 7.37758 7.68640 7.77809 8.02942 8.53253 9.00547 9.57939 11.09338 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.015220 B = 0.003256 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.233985 B = 8596.839457 C =10403.765655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.114 4.114 11 C 0.110 3.890 12 N -0.674 5.674 13 C 0.477 3.523 14 N -0.526 5.526 15 C 0.277 3.723 16 Cl -0.006 7.006 17 C -0.166 4.166 18 Cl -0.045 7.045 19 C 0.030 3.970 20 C -0.271 4.271 21 C 0.584 3.416 22 N -0.847 5.847 23 O -0.538 6.538 24 H 0.263 0.737 25 H 0.019 0.981 26 H 0.014 0.986 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.430 0.570 32 H 0.153 0.847 33 H 0.401 0.599 34 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.067 -15.721 -0.701 30.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.047 4.047 10 C -0.153 4.153 11 C -0.013 4.013 12 N -0.310 5.310 13 C 0.234 3.766 14 N -0.247 5.247 15 C 0.105 3.895 16 Cl 0.023 6.977 17 C -0.200 4.200 18 Cl -0.017 7.017 19 C 0.004 3.996 20 C -0.283 4.283 21 C 0.371 3.629 22 N -0.410 5.410 23 O -0.416 6.416 24 H 0.073 0.927 25 H 0.038 0.962 26 H 0.033 0.967 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.282 0.718 32 H 0.171 0.829 33 H 0.230 0.770 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 24.828 -14.213 -0.525 28.614 hybrid contribution 0.974 -0.352 -0.145 1.046 sum 25.802 -14.566 -0.670 29.637 Atomic orbital electron populations 1.69916 1.06324 1.26921 1.51065 1.25027 0.94746 0.99208 0.94498 0.86774 0.80420 0.83535 0.78566 1.20251 1.21371 1.18865 1.21105 0.89306 0.94567 1.50983 0.90967 1.19489 0.97308 0.91232 0.96637 1.21715 0.90342 1.01107 1.02086 1.21864 0.96508 0.80619 1.02301 1.46157 1.02033 1.12026 1.70742 1.18130 0.86442 0.86319 0.85726 1.66786 1.01048 1.33793 1.23041 1.21401 0.88926 0.87170 0.92045 1.98448 1.60478 1.43776 1.94967 1.20894 0.87150 0.93102 1.18817 1.98371 1.08790 1.97051 1.97469 1.21249 0.90527 0.98378 0.89446 1.19969 0.93516 0.93542 1.21266 1.17647 0.87296 0.82754 0.75201 1.43575 1.12270 1.09139 1.76030 1.90554 1.16328 1.82995 1.51732 0.92710 0.96249 0.96735 0.91999 0.91951 0.91136 0.91402 0.71827 0.82947 0.76976 0.75932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.16 13.96 55.43 0.77 -27.38 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -15.01 9.66 -34.44 -0.33 -15.35 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.21 4.04 -27.88 -0.11 -0.32 16 10 C -0.11 -2.27 5.27 -26.73 -0.14 -2.41 16 11 C 0.11 1.87 5.69 -4.04 -0.02 1.84 16 12 N -0.67 -10.41 5.57 -60.23 -0.34 -10.75 16 13 C 0.48 6.65 7.48 -155.16 -1.16 5.49 16 14 N -0.53 -7.45 9.53 -9.27 -0.09 -7.54 16 15 C 0.28 3.32 7.27 -17.33 -0.13 3.19 16 16 Cl -0.01 -0.06 28.09 -51.86 -1.46 -1.52 16 17 C -0.17 -1.59 6.34 -39.39 -0.25 -1.84 16 18 Cl -0.05 -0.37 27.95 -51.86 -1.45 -1.82 16 19 C 0.03 0.24 9.42 -38.87 -0.37 -0.12 16 20 C -0.27 -2.92 5.91 -104.65 -0.62 -3.54 16 21 C 0.58 6.12 8.02 -12.55 -0.10 6.02 16 22 N -0.85 -4.67 8.83 30.42 0.27 -4.41 16 23 O -0.54 -7.70 14.50 5.26 0.08 -7.62 16 24 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 26 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.43 6.83 4.97 -40.93 -0.20 6.63 16 32 H 0.15 0.57 6.55 -52.48 -0.34 0.23 16 33 H 0.40 0.95 6.96 -40.82 -0.28 0.67 16 34 H 0.41 1.80 8.93 -40.82 -0.36 1.43 16 LS Contribution 322.26 15.07 4.86 4.86 Total: -1.00 -33.27 322.26 -8.59 -41.86 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -3.24 Total: 2.25 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -3.33 Total: -5.19 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.62 Total: -50.07 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: 0.08 Total: -7.62 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -2.91 Total: -3.34 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.27 -8.59 -41.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427316.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.675 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds