Wall clock time and date at job start Tue Mar 31 2020 12:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99750 * 2 1 4 4 H 1.48498 * 109.47088 * 269.99844 * 3 2 1 5 5 H 1.48496 * 109.47311 * 30.00282 * 3 2 1 6 6 H 1.48505 * 109.46876 * 149.99844 * 3 2 1 7 7 C 1.37872 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99986 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00271 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47084 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47266 * 180.02562 * 10 9 7 12 12 N 1.46492 * 109.47228 * 179.97438 * 11 10 9 13 13 C 1.38316 * 119.99843 * 180.02562 * 12 11 10 14 14 N 1.32405 * 119.80445 * 5.47709 * 13 12 11 15 15 C 1.31961 * 121.77021 * 179.97438 * 14 13 12 16 16 Cl 1.73606 * 119.41516 * 180.02562 * 15 14 13 17 17 C 1.38677 * 121.17197 * 0.02562 * 15 14 13 18 18 Cl 1.73601 * 120.26734 * 180.02562 * 17 15 14 19 19 C 1.38319 * 119.47186 * 359.97438 * 17 15 14 20 20 C 1.40047 * 118.37194 * 0.02562 * 19 17 15 21 21 C 1.47364 * 120.58815 * 179.97438 * 20 19 17 22 22 N 1.34778 * 120.00208 * 354.24673 * 21 20 19 23 23 O 1.21618 * 120.00358 * 174.25679 * 21 20 19 24 24 H 0.97000 * 119.99720 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46698 * 60.00127 * 9 7 2 26 26 H 1.08998 * 109.47177 * 300.00509 * 9 7 2 27 27 H 1.09000 * 109.47613 * 60.00242 * 10 9 7 28 28 H 1.08998 * 109.47166 * 300.00071 * 10 9 7 29 29 H 1.09000 * 109.46652 * 59.99598 * 11 10 9 30 30 H 1.08998 * 109.47041 * 300.00092 * 11 10 9 31 31 H 0.96997 * 120.00586 * 0.02562 * 12 11 10 32 32 H 1.08007 * 120.81242 * 180.27592 * 19 17 15 33 33 H 0.96996 * 119.99558 * 0.02562 * 22 21 20 34 34 H 0.97003 * 120.00237 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0001 11 6 5.5516 -2.6365 0.0001 12 7 6.0399 -4.0176 0.0009 13 6 7.3998 -4.2704 0.0016 14 7 8.2557 -3.2661 0.1113 15 6 9.5606 -3.4629 0.1167 16 17 10.6275 -2.1013 0.2644 17 6 10.0948 -4.7379 0.0066 18 17 11.8152 -4.9697 0.0171 19 6 9.2458 -5.8236 -0.1105 20 6 7.8648 -5.5912 -0.1141 21 6 6.9160 -6.7121 -0.2370 22 7 7.3727 -7.9597 -0.4634 23 8 5.7210 -6.5113 -0.1342 24 1 -0.4850 0.8401 -0.0004 25 1 3.8752 -0.6795 0.8895 26 1 3.8746 -0.6807 -0.8905 27 1 3.6580 -3.1505 -0.8896 28 1 3.6586 -3.1501 0.8903 29 1 5.9149 -2.1225 0.8901 30 1 5.9150 -2.1227 -0.8899 31 1 5.4097 -4.7549 0.0009 32 1 9.6383 -6.8264 -0.1931 33 1 8.3258 -8.1199 -0.5452 34 1 6.7482 -8.6976 -0.5439 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427316.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:22 Heat of formation + Delta-G solvation = -43.608162 kcal Electronic energy + Delta-G solvation = -21022.285403 eV Core-core repulsion = 17426.544474 eV Total energy + Delta-G solvation = -3595.740929 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.07295 -40.05587 -38.28643 -37.71708 -37.35126 -35.64202 -34.99123 -33.64767 -33.37837 -31.02286 -28.49407 -26.09504 -25.06514 -23.48745 -22.52988 -21.82748 -19.40953 -19.10060 -18.84582 -18.58731 -17.30078 -16.86054 -16.83733 -16.38137 -16.11001 -15.85879 -15.60484 -15.47406 -14.78392 -14.72844 -14.29039 -14.20171 -13.79425 -13.22352 -13.02033 -12.81277 -12.65616 -12.62222 -12.04037 -11.88740 -11.77787 -11.65961 -11.55686 -11.35664 -11.12368 -10.91204 -10.82897 -10.78768 -10.77612 -8.92953 -8.30543 -6.35465 -0.70318 -0.04368 0.46702 0.93008 1.36713 1.38519 1.50968 1.55629 2.07405 2.36050 2.37970 2.47271 3.04794 3.24325 3.48592 3.60398 3.73439 4.05225 4.14718 4.21735 4.39230 4.49291 4.72249 4.84673 4.92895 4.98467 5.40280 5.51471 5.61707 5.68977 5.83671 6.07603 6.26156 6.29558 6.72246 6.80550 7.23522 7.29219 8.86372 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.015220 B = 0.003256 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.233985 B = 8596.839457 C =10403.765655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.245 1.245 7 C -0.535 4.535 8 H 0.031 0.969 9 C -0.006 4.006 10 C -0.103 4.103 11 C 0.130 3.870 12 N -0.689 5.689 13 C 0.457 3.543 14 N -0.553 5.553 15 C 0.257 3.743 16 Cl -0.005 7.005 17 C -0.157 4.157 18 Cl -0.026 7.026 19 C 0.050 3.950 20 C -0.266 4.266 21 C 0.580 3.420 22 N -0.818 5.818 23 O -0.581 6.581 24 H 0.267 0.733 25 H 0.025 0.975 26 H 0.024 0.976 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.427 0.573 32 H 0.202 0.798 33 H 0.419 0.581 34 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.579 -16.649 -0.915 33.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.168 1.168 7 C -0.573 4.573 8 H 0.049 0.951 9 C -0.044 4.044 10 C -0.141 4.141 11 C 0.006 3.994 12 N -0.328 5.328 13 C 0.215 3.785 14 N -0.274 5.274 15 C 0.087 3.913 16 Cl 0.024 6.976 17 C -0.191 4.191 18 Cl 0.003 6.997 19 C 0.024 3.976 20 C -0.278 4.278 21 C 0.367 3.633 22 N -0.382 5.382 23 O -0.463 6.463 24 H 0.076 0.924 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.278 0.722 32 H 0.219 0.781 33 H 0.252 0.748 34 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 28.448 -15.204 -0.747 32.264 hybrid contribution -0.013 -0.246 -0.086 0.261 sum 28.434 -15.450 -0.833 32.371 Atomic orbital electron populations 1.70073 1.08367 1.28251 1.52568 1.26041 0.95652 1.03648 0.93974 0.85627 0.79545 0.77978 0.79339 1.19009 1.20888 1.16812 1.21464 0.92027 0.93187 1.50650 0.95091 1.19418 0.93964 0.93922 0.97088 1.21483 0.92778 0.98471 1.01395 1.21423 0.93850 0.82063 1.02095 1.45928 1.02983 1.10717 1.73173 1.18369 0.85686 0.87664 0.86746 1.66660 1.02101 1.34711 1.23974 1.21634 0.88507 0.88206 0.92942 1.98443 1.60122 1.44041 1.95012 1.21031 0.88388 0.92596 1.17073 1.98388 1.07130 1.96893 1.97287 1.21707 0.88875 1.00121 0.86888 1.20083 0.94814 0.92489 1.20453 1.17693 0.86534 0.83903 0.75186 1.43359 1.13660 1.07624 1.73579 1.90541 1.18113 1.83670 1.53968 0.92423 0.95665 0.95773 0.92700 0.92747 0.91456 0.91485 0.72219 0.78112 0.74766 0.74846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.05 13.96 21.45 0.30 -60.75 16 2 C 0.00 0.21 5.47 84.65 0.46 0.67 16 3 Si 0.95 45.12 27.47 68.60 1.88 47.00 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.24 -10.75 6.54 99.48 0.65 -10.10 16 7 C -0.54 -31.80 9.66 25.60 0.25 -31.55 16 8 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 9 C -0.01 -0.29 4.04 29.85 0.12 -0.17 16 10 C -0.10 -4.20 5.27 30.60 0.16 -4.04 16 11 C 0.13 4.44 5.69 86.38 0.49 4.93 16 12 N -0.69 -21.59 5.57 -344.47 -1.92 -23.51 16 13 C 0.46 12.44 7.48 133.63 1.00 13.44 16 14 N -0.55 -15.27 9.53 -183.26 -1.75 -17.02 16 15 C 0.26 5.78 7.27 84.78 0.62 6.39 16 16 Cl -0.01 -0.10 28.09 -2.72 -0.08 -0.18 16 17 C -0.16 -2.57 6.34 22.39 0.14 -2.43 16 18 Cl -0.03 -0.34 27.95 -2.72 -0.08 -0.41 16 19 C 0.05 0.62 9.42 22.73 0.21 0.83 16 20 C -0.27 -5.22 5.91 -19.88 -0.12 -5.34 16 21 C 0.58 11.10 8.02 86.65 0.70 11.79 16 22 N -0.82 -6.36 8.83 -175.92 -1.55 -7.92 16 23 O -0.58 -16.52 14.50 -4.09 -0.06 -16.58 16 24 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 25 H 0.03 1.18 7.20 -2.39 -0.02 1.16 16 26 H 0.02 1.11 7.57 -2.39 -0.02 1.09 16 27 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.43 13.94 4.97 -94.52 -0.47 13.47 16 32 H 0.20 0.36 6.55 -2.91 -0.02 0.35 16 33 H 0.42 0.04 6.96 -92.71 -0.65 -0.61 16 34 H 0.42 2.44 8.93 -92.71 -0.83 1.61 16 Total: -1.00 -75.42 322.26 -0.02 -75.44 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -0.80 Total: 9.39 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 4.03 Total: -5.47 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -4.92 Total: -109.19 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.06 Total: -16.58 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.00 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.15 Total: -0.59 kcal Total: -75.42 -0.02 -75.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427316.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.833 kcal (2) G-P(sol) polarization free energy of solvation -75.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds