Wall clock time and date at job start Tue Mar 31 2020 12:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99727 * 2 1 4 4 H 1.48501 * 109.47297 * 240.00258 * 3 2 1 5 5 H 1.48501 * 109.47141 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46594 * 120.00460 * 3 2 1 7 7 C 1.38808 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00324 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99832 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99971 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46994 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.47102 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.47105 * 179.97438 * 12 11 10 14 14 C 1.34774 * 119.99763 * 180.02562 * 13 12 11 15 15 O 1.21530 * 119.99962 * 359.97438 * 14 13 12 16 16 C 1.48027 * 119.99922 * 180.02562 * 14 13 12 17 17 N 1.32790 * 119.72103 * 0.02562 * 16 14 13 18 18 C 1.31429 * 121.66539 * 179.97438 * 17 16 14 19 19 C 1.38805 * 120.92042 * 359.97438 * 18 17 16 20 20 Cl 1.73601 * 120.32526 * 180.02562 * 19 18 17 21 21 C 1.38657 * 119.34455 * 0.02562 * 19 18 17 22 22 C 1.38729 * 118.46721 * 359.97438 * 21 19 18 23 23 Cl 1.73605 * 120.47783 * 179.97438 * 22 21 19 24 24 H 0.97005 * 120.00430 * 359.97438 * 1 2 3 25 25 H 0.97005 * 119.99850 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.47151 * 59.99821 * 10 9 7 27 27 H 1.09004 * 109.46858 * 299.99633 * 10 9 7 28 28 H 1.08998 * 109.47127 * 60.00040 * 11 10 9 29 29 H 1.08996 * 109.47359 * 299.99925 * 11 10 9 30 30 H 1.08998 * 109.46749 * 60.00234 * 12 11 10 31 31 H 1.08996 * 109.47300 * 300.00386 * 12 11 10 32 32 H 0.96998 * 120.00271 * 0.02562 * 13 12 11 33 33 H 1.08008 * 119.53924 * 180.28079 * 18 17 16 34 34 H 1.08001 * 120.76525 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0639 -4.8196 0.0001 12 6 1.8289 -6.1447 -0.0005 13 7 0.8769 -7.2582 0.0007 14 6 1.3262 -8.5289 0.0009 15 8 2.5211 -8.7509 -0.0004 16 6 0.3643 -9.6540 0.0016 17 7 -0.9400 -9.4050 0.0015 18 6 -1.8275 -10.3745 0.0015 19 6 -1.4307 -11.7046 0.0012 20 17 -2.6162 -12.9729 0.0007 21 6 -0.0783 -12.0103 0.0014 22 6 0.8356 -10.9666 0.0013 23 17 2.5413 -11.2897 0.0021 24 1 -0.4851 0.8401 0.0004 25 1 0.3555 -2.3880 0.0002 26 1 2.6848 -3.7145 0.8894 27 1 2.6847 -3.7145 -0.8906 28 1 0.4369 -4.7621 -0.8896 29 1 0.4376 -4.7617 0.8903 30 1 2.4562 -6.2025 0.8890 31 1 2.4550 -6.2024 -0.8909 32 1 -0.0767 -7.0810 0.0014 33 1 -2.8801 -10.1328 -0.0032 34 1 0.2560 -13.0373 0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169178632.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:28 Heat of formation + Delta-G solvation = 2.856179 kcal Electronic energy + Delta-G solvation = -20305.785067 eV Core-core repulsion = 16712.058983 eV Total energy + Delta-G solvation = -3593.726084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.21923 -39.30412 -37.38796 -37.04008 -36.05735 -34.41418 -33.19926 -32.11414 -31.56562 -29.50782 -26.01207 -24.76804 -24.18508 -22.59048 -21.25387 -20.84225 -18.62722 -17.84376 -17.34717 -16.93047 -16.00286 -15.81818 -15.73175 -15.17738 -14.75122 -14.43896 -14.14990 -13.92926 -13.43692 -13.26062 -12.98661 -12.90262 -12.44323 -12.34063 -12.14048 -11.73970 -11.60340 -10.95281 -10.90545 -10.77922 -10.69081 -10.60620 -10.29047 -10.10131 -9.79327 -9.67302 -9.55230 -9.06922 -8.86530 -6.92563 -5.76004 -3.05032 -0.24243 0.25636 1.11960 1.61806 2.23857 2.79930 3.17772 3.45548 3.49470 3.50761 3.55693 3.88820 4.04861 4.25561 4.35926 4.60056 4.92083 5.04860 5.13754 5.30641 5.47513 5.58259 5.62928 5.94825 6.05877 6.19394 6.32883 6.37105 6.79635 6.83875 6.83991 7.38691 7.70579 7.98481 8.42951 9.53933 10.11174 10.45795 11.46911 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.002112 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.651946 B =13255.008934 C =14371.912275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.157 3.843 11 C -0.138 4.138 12 C 0.122 3.878 13 N -0.703 5.703 14 C 0.561 3.439 15 O -0.510 6.510 16 C 0.096 3.904 17 N -0.426 5.426 18 C 0.118 3.882 19 C -0.062 4.062 20 Cl -0.034 7.034 21 C -0.068 4.068 22 C -0.030 4.030 23 Cl 0.001 6.999 24 H 0.256 0.744 25 H 0.384 0.616 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.411 0.589 33 H 0.181 0.819 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.744 -30.476 0.002 30.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.029 3.971 11 C -0.176 4.176 12 C -0.002 4.002 13 N -0.354 5.354 14 C 0.343 3.657 15 O -0.385 6.385 16 C -0.043 4.043 17 N -0.137 5.137 18 C -0.043 4.043 19 C -0.092 4.092 20 Cl -0.005 7.005 21 C -0.095 4.095 22 C -0.061 4.061 23 Cl 0.031 6.969 24 H 0.065 0.935 25 H 0.217 0.783 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.247 0.753 33 H 0.198 0.802 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.915 -29.720 0.000 29.977 hybrid contribution -0.185 -0.085 0.003 0.204 sum -4.100 -29.805 0.003 30.086 Atomic orbital electron populations 1.69651 1.05125 1.25797 1.57757 1.24756 0.95563 0.97760 1.03004 0.86239 0.78495 0.83396 0.77883 1.21232 1.21683 1.21237 1.19200 0.91071 0.84126 1.42757 0.91139 1.42333 1.05883 0.99965 1.89622 1.20517 0.93236 0.85164 0.98229 1.21952 0.99614 0.93118 1.02957 1.21465 0.91600 0.84291 1.02806 1.45924 1.11734 1.04938 1.72796 1.17586 0.87092 0.82531 0.78464 1.90908 1.14649 1.84068 1.48847 1.21350 0.91058 0.92551 0.99383 1.67895 1.00666 1.35309 1.09838 1.23014 1.00647 0.85924 0.94700 1.22283 0.91003 0.91772 1.04118 1.98426 1.55690 1.49926 1.96452 1.21512 0.90231 1.00587 0.97138 1.21929 0.89288 0.93413 1.01456 1.98463 1.07596 1.95150 1.95724 0.93452 0.78267 0.96027 0.96013 0.91149 0.91142 0.90920 0.90910 0.75320 0.80187 0.81962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.71 5.60 -59.91 -0.34 -19.05 16 10 C 0.16 3.11 6.26 -4.04 -0.03 3.09 16 11 C -0.14 -2.11 5.44 -26.73 -0.15 -2.26 16 12 C 0.12 1.63 5.67 -4.04 -0.02 1.61 16 13 N -0.70 -8.58 5.54 -61.19 -0.34 -8.92 16 14 C 0.56 7.28 7.80 -12.25 -0.10 7.19 16 15 O -0.51 -7.78 13.94 5.34 0.07 -7.71 16 16 C 0.10 1.04 6.75 -82.98 -0.56 0.48 16 17 N -0.43 -4.01 9.54 -9.75 -0.09 -4.10 16 18 C 0.12 0.82 10.98 -17.51 -0.19 0.62 16 19 C -0.06 -0.40 6.35 -39.22 -0.25 -0.65 16 20 Cl -0.03 -0.18 28.99 -51.86 -1.50 -1.69 16 21 C -0.07 -0.47 9.78 -39.24 -0.38 -0.85 16 22 C -0.03 -0.29 6.37 -38.95 -0.25 -0.54 16 23 Cl 0.00 0.01 26.03 -51.86 -1.35 -1.34 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.38 10.18 7.67 -40.82 -0.31 9.87 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.41 4.46 7.80 -40.82 -0.32 4.14 16 33 H 0.18 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.16 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 331.05 15.07 4.99 4.99 Total: -1.00 -32.32 331.05 -8.59 -40.91 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -3.56 Total: 5.86 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -2.17 Total: 1.20 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: -0.04 Total: -59.74 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.07 Total: -7.71 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -2.85 Total: -3.02 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.32 -8.59 -40.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169178632.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.762 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds